ChIP-Atlas: Target genes

Potential target genes for RFX3

Query protein: RFX3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2636180 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RFX3's Target genes

◢ RFX3: Average

◢ SRX2636179: Hep G2

◣ SRX2636180: Hep G2

◢ SRX23177031: PLC/PRF/5

◢ SRX23177032: PLC/PRF/5

◢ RFX3: STRING

TMEM9
ZBBX
NPAS4
C1orf159
CFAP54
NEK10
LRRC6
KLHL18
KIF9
POLD3
ZNF497
NDRG4
FOXJ1
SDCBP2
CHURC1-FNTB
CHURC1
BTBD3
TTC23L
KIF3B
DYNC2LI1
WFDC3
DNTTIP1
ZBTB46
CFAP36
ZNF84
FKBPL
ATF6B
PRR29
HSDL1
DNAAF1
PITPNM1
SNRPF
BRCA1
CEP41
DNAH7
LRGUK
PIN1
RUNDC1
PTGES3L-AARSD1
PTGES3L
C11orf49
DAD1
PDE4A
IPO4
ZSWIM1
FANK1
NPHP1
LOC112694756
POLL
DPCD
ACOX3
RAB11FIP2
TTF1
CFAP77
SPATA2L
TOR2A
EFHC1
ACTR6
ZFHX2
THTPA
DYNLRB2
ITFG2
POLRMT
SPEF1
IQCH
AAGAB
NME9
DNAAF3
DYNC2I1
INTU
CTU1
AHI1
MRPS2
C9orf116
FZR1
PPP1R21
PSMC3IP
PES1
PMVK
SYS1
LRPAP1
MFSD4B
RHOD
OVCA2
TRIT1
ABAT
PRKCG
CEP112
DCP1B
CCDC8
CCDC113
MORN4
PRKN
PACRG
ANGEL1
CCDC34
LMBRD1
BBS1
WDR35
MEAK7
CRB2
UBE2O
AANAT
TEKT1
EBNA1BP2
CFAP57
CFAP69
MOCS3
DPM1
RSPH14
RAB36
CSNK1G2
PREPL
CAMKMT
ANKRD42
CARS1
FAM110A
LENG1
WDR93
PEX11A
PFDN5
MYG1
TSNAXIP1
RANBP10
CFAP43
AGTRAP
C7orf50
UBXN6
XKR7
AZIN2
NCOA5
CSNK1G1
PATZ1
RPP38
AGPAT5
ABI2
SHQ1
C16orf46
STK32C
QTRT2
CCDC191
TBCEL-TECTA
TBCEL
ARFGAP1
BDP1
TXNDC17
KIAA0753
NRSN2
FBXW9
MTRNR2L2
MSH3
DHFR
ADGB
THNSL1
DYNLL1
HSPH1
COG7
SPAG8
HINT2
HSP90B1
LRRC27
DAGLA
TTLL1
CCDC39
RFC5
PCOTH
MIPEP
C2orf73
UBXN11
POMT2
GSTZ1
SLF1
KIAA0825
SLC37A1
RSPH1
PROSER3
HSPB6
SPAG16
E4F1
JAM3
ELMOD2
FAM24A
RALB
DRC7
RPL35A
IQCG
KIAA1841
MORN2
DHX57
WDR54
C2orf81
OTUB1
MRPL10
LRRC46
USP30
KRT8
KIF23
FAM161A
TTC30A
FAAP24
CEP89
SIK3
FAM204A
AP1S1
CCDC30
CALR3
C19orf44
LIN28A
SPEF2
PRKAR1A
TRIP12
FBXO36
SORBS2
ARL6
STK11IP
EFCAB12
NR1D1
NUDT2
KIF24
TSPYL4
DSE
RALGAPA1
LZTFL1
TMX4
TBC1D19
ARL4A
CRNKL1
CFAP61
NR2F2
ZNF324
PKIG
NUCB2
DNAJC16
CASP9
PPAN-P2RY11
PPAN
ANGPTL6
ZNF584
ENDOV
ULK4
SF1
CCDC130
RNF40
CCDC189
KATNIP
GTF3C1
B9D1
SIPA1L1
ENTPD5
BBOF1
MTRNR2L1
ARMC3
DMWD
YWHAQ
FSIP1
INSM2
NDUFA5
PTPN1
TP53BP1
TTC30B
CFAP126
SF3A1
CCDC157
DUSP3
CFAP97D1
MAFA
DNAJB13
MIB2
DNAH2
L3MBTL2
C20orf96
GTF2E2
PIFO
PER2
TMEM107
STOML2
ING2
ZNF184
DNAJC1
MOK
IQANK1
FAM83H
KIF6
TMEM53
ARMH1
ID1
IQSEC3
DYNC2H1
RNF141
HMG20B
FBXL13
ARMC10
GTF3C4
DDX31
TOM1L2
DRC3
CHCHD3
PACRGL
MIER1
DNAI4
CFAP53
FBXL16
CHN1
YIPF3
POLR1C
TMEM231
C17orf97
KLHL38
DYNC2I2
MBD4
IFT122
CATIP
PHC1
CACUL1
SPATA2
RFC2
TMF1
TASP1
RNF139
CFAP58
ALS2
LRRC56
HRAS
PRKCSH
CCDC151
TTC26
VAT1
RND2
EFCAB10
NAA40
ZNF473
VRK3
ERF
ELP1
ABITRAM
RPN1
ETFRF1
CFAP94
RFX3
SLC25A27
CYP39A1
SMG7
JUNB
TADA2B
CCDC96
PHOSPHO2
CCDC173
DLG4
ACADVL
IFT81
IQCE
BRAT1
ALMS1
H1-10
LRRC73
RFX1
NEK2
RPGRIP1L
FTO
SRFBP1
RHPN1
ID2
FOXN2
HMGCR
PRMT5
THOP1
SGTA
DYRK1A
NDUFS3
KBTBD4
KNOP1
IQCK
ZNHIT1
PLOD3
ZNF324B
WHRN
CFAP46
UVRAG
ZC3H10
RPL41
PAK4
FBXW7
BCL2L1
IFT22
TBC1D16
CCDC40
POLI
ITSN1
CRYZL1
MTRNR2L8
MZF1
LOC101928764
SPATA4
C7orf57
BTRC
C20orf27
RPS27A
CLHC1
CYTH2
SPACA9
AK8
PODNL1
DCAF15
STK19
DXO
PCGF1
LBX2
REEP6
PCSK4
TFIP11
ARRDC4
ANO3
PRDM4
USP54
TM9SF1
YWHAE
IFT140
CRAMP1
FOXN3
HMGN2
TMED8
SAMD15
MARCHF8
FAM183A
GSG1
DNAJA1
APTX
SYT5
PPP1R16A
FOXH1
PRKAR1B
FAM214A
ODF2
PPP2R1A
SPICE1
WDR90
CPLANE2
MKS1
KCNH7
U2AF2
CEP152
TBC1D32
C16orf71
ANKS3
TRAF3IP1
PIK3R2
PIH1D2
NKAPD1
PCSK1N
MUC1
PALM3
CEP162
TRIM36
MAP3K14
TENT5C
MSH5
CLIC1
TSEN2
KMT5C
FAM187A
EFTUD2
CCDC103
SAXO2
EFL1
PBX3
POFUT2
ZNF24
VTA1
NMBR
AXDND1
PCNX4
LOC728392
CCDC175
C16orf86
ODF3L1
RTF2
TPGS1
LPIN2
C11orf97
SSBP4
NUMA1
LRTOMT
PPP1R11
FAM151B
CCDC65
PJA2
TSGA10
C2orf15
SEMA4B
ORAI3
TMEM67
RER1
MORN1
UBN2
ARHGDIB
CLUAP1
C16orf90
ZFYVE28
CFAP99
RHBDD2
C3orf49
TDRP
YWHAZ
PCGF2
NME7
BLZF1
FAM185A
SLC25A14
WDR73
NMB
ZEB1
SPATA13
ZNF768
METTL15
KIF18A
SRSF7
OSCP1
LRRC23
TCTN3
CALML4
CCDC146
MRPS21
MCAT
BBS5
KIFC3
ESRRA
IFT172
CYC1
MICOS13
HSD11B1L
TECPR2
CINP
GPR137
FANCI
BAD
IQCC
DCDC2B
CCDC28B
TRAPPC2L
GALNS
DAAM1
CDC37
PANK2
CCDC57
HSPBP1
BRSK1
TNPO1
LINS1
ASB7
MX2
TULP3
DBN1
CFAP298-TCP10L
CFAP298
MFSD6
THAP10
LRRC49
EHD1
AHNAK
COQ7
CXADR
MID1IP1
PICK1
MYCBP
SFXN2
ARL3
INTS8
PKP4
CCDC148
CCPG1
C15orf65
FAM174A
DYRK3
RNF5
AGPAT1
TEX9
SPG21
COPS3
RBKS
BABAM2
CEP295NL
MARCHF9
CDK4
FAM86B2
SPATA18
NAGPA
CFAP20
CATSPERG
ACAP2
SETD4
MAPRE3
MORN3
LOC390877
GTF2F1
CEP126
ANGPTL5
MLEC
SPCS1
GLT8D1
NAA20
RRP12
PELI1
MAP1LC3A
ITGB3BP
EFCAB7
LTV1
DZIP1
PRR3
GNL1
CEP135
BRD3OS
MUL1
PLEKHB1
VPS53
PPP2R5E
ICA1L
KLF16
RIN1
SLC25A3
HIGD2B
BBS4
POLR3F
DZANK1
MSMO1
TMEM234
EIF3I
ZNF446
ARF3
THBS3
MTX1
EIF2S1
ATP6V1D
E2F3
PARS2
SREK1
MYADM
TUBE1
FAM229B
DNAJC10
DNAAF2
EIF2S2
POLR3H
STK35
SPATA24
BRMS1
B4GAT1
PUM1
MNS1
NEK11
ASTE1
OSBPL2
RUFY1
NET1
QTRT1
PLIN5
LRG1
HM13
KIAA0319
NKX1-1
SPATA17
GPATCH2
P4HA1
ZIM2
PEG3
ZNF775
FBF1
E2F8
IFT57
FAM86B1
TRMT12
ZNF165
DNAL4
FRG2C
TMEM74B
ERICH6
BAIAP2
GTF2IRD2
MCM7
AP4M1
ZMAT2
RABL2A
SSC5D
NAT14
POLD2
SPATA33
GLRX5
DUX4
DUSP6
CFAP299
IRAK1BP1
CCDC74B
CEP164
RUFY2
CHERP
GNAT2
AMPD2
STK16
GLB1L
LMAN2L
ROPN1L
FLACC1
ZDHHC1
PLCH1
TIGD4
ARFIP1
TSPAN19
LRRIQ1
IFT74
CRIP1
SPAG1
RNF223
UBL3
TMEM88
NAA38
CYB5D1
MARK3
RASL10A
GAS2L1
BAIAP3
CCDC74A
ZNF862
TEX264
ZNF664-RFLNA
ZNF664
CCDC92
PEF1
TCTN2
WWOX
DNAJC24
DCDC1
GAS8
DBNDD1
ZNF214
NLRP14
DENND2B
FAM227B
DTWD1
GLRA1
SDE2
HSPA12A
ENO4
RABL2B
TNRC6A
LMLN
SLC25A22
STK36
RNF25
LYRM4
FARS2
ST18
SLC27A1
TMEM91
B9D2
FASTKD2
SLC35E1
NQO1
NAP1L1
MTF1
BBS12
DNAH12
DNAL1
NEMP1
GTF2IRD2B
DUSP18
NACAD
TPST1
FAM120B
FOXO6
GOLGB1
ING1
WDR19
SPATA6
AJM1
C4orf48
MEAF6
CCNB1
KLHDC10
RAB3GAP1
FER
ENTPD7
PIBF1
DIS3
HTR5A
JUND
TIMM21
FBXO15
TCTN1
TOR3A
DYRK4
UBXN2B
EPN1
PPP1R42
TPM3
PCF11
NOXO1
GFER
PBXIP1
MPZL3
HNF4A
KCNN1
ALKBH5
DSTN
BFSP1
C2orf50
PPP5C
COPB2
SLC25A46
TTC7A
MCFD2
REPIN1
SFI1
PLXNB1
PNMA1
XPR1
PGD
CLBA1
SSX2IP
SPATA7
CEP43
NDUFAF3
DALRD3
DHX40
MBNL2
RSPH4A
CENPH
PLA2G2A
PSMB5
SRF
RSPH3
GNG3
BSCL2
TAGLN2
HSPA1B
IPO11
CYSTM1
NUP62CL
DNAAF6
CCP110
THG1L
NBR1
WIPF2
ZNF76
SHOC2
BBIP1
ARL2BP
HDGF
TMX2
MED19
GPSM3
FHAD1
WDPCP
MDH1
ZNF875
CIRBP
MICOS10-NBL1
MICOS10
TOGARAM1
KLHL28
ZNF396
TMEM95
KCTD11
CFDP1
ZNHIT2
FAU
NIM1K
KLF4
CYP46A1
CFAP221
GMPPB
AMIGO3
PDCD6
UFSP2
C4orf47
DNAJC25-GNG10
DNAJC25
GLIPR1L1
CAPS2
LRRC10B
SMC1A
RIBC1
ERI3
GPN1
CCDC121
LY6G5C
DNAH9
PIM2
GNL2
CBX8
KATNAL1
TTC5
SMIM5
CFAP157
SIK1B
SIK1
SEC61A2
TMEM254
ZC4H2
PLTP
SH3BGR
LCA5L
SF3B5
TNKS1BP1
FAM47E-STBD1
FAM47E
TRIM39-RPP21
TRIM39
RPF2
VEGFB
LOC114841035
FKBP2
SERTAD3
TMEM232
MAK
PCM1
DLGAP3
CYB5B
BSG
IFT52
ARMC9
WDR13
CPD
JUN
DNAH6
CELSR3
MAFG
LRP4
TMEM209
SSMEM1
METRN
ANTKMT
VAV2
PARD6A
ACD
ARL13B
TRAF3
HYDIN
L1CAM
DMTN
CRIP2
UBFD1
EARS2
TOMM7
FAM227A
CBY1
CHD4
GALK2
COPS2
UMAD1
WDTC1
PPP1R7
PASK
FBXL14
CNOT8
HNRNPF
LCORL
EMC3
PNP
ELAPOR1
C1orf194
ZNRF1
CSTF3
CRYAA2
CRYAA
RTBDN
GDF11
TRUB2
COQ4
GEMIN8
CENPS-CORT
CENPS
TTC8
G3BP1
AP3D1
TAF6L
SMIM17
TTC21A
GORASP1
CCDC200
TOB2
DIXDC1
MED25
FUZ
ATXN1
ARMC2
TCTEX1D4
BTBD19
CCAR2
SYVN1
ZBTB40
GET3
WDR25
WARS1
COMMD8
CDKN2A
WBP1
INO80B
UBXN10
PLA2G2C
CXXC1
PIK3R4