ChIP-Atlas: Target genes

Potential target genes for RFX3

Query protein: RFX3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2636180 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RFX3's Target genes

◢ RFX3: Average

◢ SRX2636179: Hep G2

◣ SRX2636180: Hep G2

◢ SRX23177031: PLC/PRF/5

◢ SRX23177032: PLC/PRF/5

◢ RFX3: STRING

TMEM9
ZBBX
C1orf159
NPAS4
CFAP54
LRRC6
NDRG4
ZNF497
CHURC1-FNTB
CHURC1
NEK10
TTC23L
POLD3
FOXJ1
KLHL18
KIF9
SDCBP2
BTBD3
ZBTB46
TTLL9
KIF3B
FKBPL
ATF6B
DYNC2LI1
CFAP36
WFDC3
DNTTIP1
BRCA1
DNAH7
PRR29
CEP41
PDE4A
C11orf49
PIN1
LRGUK
MAPRE2
HSDL1
DNAAF1
SNRPF
RUNDC1
PTGES3L-AARSD1
PTGES3L
IPO4
PITPNM1
DAD1
ZSWIM1
RAB11FIP2
ACOX3
POLL
DPCD
NPHP1
ACTR6
LOC112694756
IQCH
AAGAB
DYNLRB2
ZFHX2
THTPA
TTF1
CFAP77
TOR2A
MRPS2
C9orf116
CTU1
NME9
PMVK
SPEF1
DNAAF3
SPATA2L
POLRMT
FANK1
TRIT1
DYNC2I1
INTU
FZR1
EFHC1
CCDC8
RHOD
CCDC113
ABAT
CEP112
LRPAP1
MFSD4B
DCP1B
AHI1
PPP1R21
TEKT1
MORN4
PRKN
PACRG
OVCA2
CCDC34
CRB2
PES1
PSMC3IP
SYS1
PRKCG
RSPH14
RAB36
ZNF84
BBS1
LMBRD1
EBNA1BP2
CFAP57
CSNK1G2
AZIN2
CARS1
WDR35
ANGEL1
PREPL
CAMKMT
MEAK7
TSNAXIP1
RANBP10
WDR93
PEX11A
C7orf50
AGTRAP
LENG1
NCOA5
RPP38
CFAP43
UBXN6
AGPAT5
CFAP69
MTRNR2L2
MSH3
DHFR
PATZ1
SHQ1
ARFGAP1
CSNK1G1
CCDC39
NRSN2
PFDN5
MYG1
MOCS3
DPM1
DYNLL1
UBE2O
AANAT
C16orf46
BDP1
XKR7
FBXW9
TTLL1
TBCEL-TECTA
TBCEL
DAGLA
TXNDC17
KIAA0753
UBXN11
STK32C
LRRC27
QTRT2
CCDC191
PROSER3
HSPB6
FAM110A
COG7
ADGB
HSP90B1
ABI2
JAM3
SPAG8
HINT2
C2orf73
POMT2
GSTZ1
KIAA1841
HSPH1
ELMOD2
RALB
E4F1
PCOTH
MIPEP
RFC5
SLF1
KIAA0825
SLC37A1
RSPH1
RPL35A
IQCG
KRT8
WDR54
C2orf81
USP30
THNSL1
KIF23
SPAG16
FAAP24
CEP89
TTC30A
FAM24A
TRIP12
FBXO36
LRRC46
CCDC30
TBC1D19
PRKAR1A
FAM204A
AP1S1
SORBS2
DRC7
NUDT2
KIF24
TMX4
ARL6
SIK3
ARL4A
OTUB1
ZNF584
RALGAPA1
ZNF324
TSPYL4
DSE
CALR3
C19orf44
MORN2
DHX57
SPEF2
DNAJC16
CASP9
DMWD
FSIP1
NR1D1
CRNKL1
CFAP61
L3MBTL2
ENTPD5
BBOF1
DNAH2
LIN28A
NUCB2
CFAP126
DUSP3
CFAP97D1
YWHAQ
ENDOV
ARMC3
STK11IP
KATNIP
GTF3C1
RNF40
CCDC189
CCDC130
NDUFA5
B9D1
NR2F2
GTF2E2
INSM2
SF1
SF3A1
CCDC157
PTPN1
EFCAB12
MAFA
WDR31
SIPA1L1
MTRNR2L1
PER2
PPAN-P2RY11
PPAN
ANGPTL6
DNAJC1
PKIG
TMEM107
HMG20B
TP53BP1
C20orf96
ING2
DYNC2H1
FBXL13
ARMC10
TMEM53
ARMH1
STOML2
CACUL1
IQANK1
FAM83H
MIB2
ID1
ZNF184
CATIP
YIPF3
POLR1C
TMEM231
MOK
PACRGL
MBD4
IFT122
PIFO
TTC30B
MIER1
DNAI4
CFAP53
IQSEC3
KLHL38
ELP1
ABITRAM
DNAJB13
CHCHD3
TOM1L2
DRC3
PHC1
VAT1
RND2
KIF6
RFC2
LRRC56
HRAS
RNF141
C17orf97
DYNC2I2
CHN1
SPATA2
ALS2
EFCAB10
IFT81
ZNF473
VRK3
TASP1
PRKCSH
CCDC151
RFX3
GTF3C4
DDX31
FBXL16
RNF139
DLG4
ACADVL
CFAP58
RFX1
ETFRF1
CFAP94
JUNB
SLC25A27
CYP39A1
RPN1
ID2
RHPN1
TADA2B
CCDC96
NAA40
SMG7
IQCE
ERF
MTRNR2L8
ALMS1
H1-10
RPGRIP1L
FTO
TTC26
NEK2
SRFBP1
CFAP46
FOXN2
HMGCR
DYRK1A
ZNHIT1
PLOD3
NDUFS3
KBTBD4
GTF2IRD2B
GTF2IRD2
TMF1
PAK4
ITSN1
CRYZL1
MZF1
THOP1
SGTA
KNOP1
STK19
DXO
PHOSPHO2-KLHL23
PHOSPHO2
CCDC173
PODNL1
DCAF15
UVRAG
BCL2L1
POLI
FBXW7
LRRC73
PCGF1
LBX2
PRMT5
IFT22
ZC3H10
RPL41
WHRN
C20orf27
ZNF324B
SPATA4
RPS27A
CLHC1
ARRDC4
C7orf57
ANO3
CYTH2
TM9SF1
USP54
KLHDC9
ODF2
FAM214A
PRDM4
REEP6
PCSK4
BTRC
LOC101928764
FOXN3
SYT5
PPP2R1A
TMED8
SAMD15
TBC1D16
CCDC40
WDR90
MARCHF8
HMGN2
DNAJA1
APTX
YWHAE
SPACA9
AK8
PRKAR1B
SPICE1
PPP1R16A
FOXH1
PIH1D2
NKAPD1
FAM183A
U2AF2
CEP162
VTA1
NMBR
TFIP11
IFT140
CRAMP1
TSEN2
TBC1D32
CEP152
PCSK1N
C16orf86
MUC1
CPLANE2
C16orf71
ANKS3
ODF3L1
MAP3K14
C11orf97
MSH5
CLIC1
TRIM36
AXDND1
TSGA10
C2orf15
PALM3
RTF2
MKS1
TPGS1
POFUT2
LOC728392
SAXO2
EFL1
LPIN2
TDRP
FAM151B
ZNF24
NUMA1
LRTOMT
PPP1R11
PCNX4
FAM187A
EFTUD2
CCDC103
KCNH7
KMT5C
TENT5C
TRAF3IP1
PIK3R2
RER1
MORN1
SSBP4
UBN2
PBX3
CCDC175
ARHGDIB
ORAI3
C3orf49
TMEM67
YWHAZ
PJA2
SEMA4B
CLUAP1
C16orf90
WDR73
NMB
CCDC65
OSCP1
MCAT
ZNF768
BBS5
SLC25A14
SPATA13
RHBDD2
LRRC23
GPR137
BAD
SRSF7
CALML4
CCDC57
HSPBP1
BRSK1
ZEB1
FAM185A
IFT172
PCGF2
MICOS13
HSD11B1L
NME7
BLZF1
MRPS21
ZFYVE28
CFAP99
DBN1
IQCC
DCDC2B
CCDC28B
THAP10
LRRC49
PANK2
DUX4
SIK1B
SIK1
EHD1
MFSD6
FANCI
TRAPPC2L
GALNS
CCDC146
CDC37
TECPR2
CINP
METTL15
KIF18A
CYC1
MID1IP1
LINS1
ASB7
TNPO1
CXADR
CFAP298-TCP10L
CFAP298
ESRRA
PICK1
MX2
SFXN2
ARL3
TCTN3
TULP3
MYCBP
ACAP2
CATSPERG
KIFC3
DYRK3
DAAM1
RNF5
AGPAT1
SPG21
COQ7
WDR74
LTV1
MLEC
MAP1LC3A
FAM174A
FAM86B2
CCPG1
C15orf65
MAPRE3
LOC390877
GTF2F1
TEX9
CEP126
ANGPTL5
SLC25A3
VPS53
INTS8
DZIP1
TMEM234
EIF3I
RRP12
PELI1
CEP295NL
AHNAK
CEP135
ARF3
THBS3
MTX1
BRD3OS
MUL1
SETD4
KLF16
PLEKHB1
COPS3
TUBE1
FAM229B
ABHD11
RBKS
BABAM2
NAA20
PRR3
GNL1
MORN3
RIN1
ITGB3BP
EFCAB7
ZNF446
SMARCAD1
CRYAA2
CRYAA
POLR3F
DZANK1
SPATA24
DNAJC10
NAGPA
ICA1L
MARCHF9
CDK4
HIGD2B
BBS4
NKX1-1
NET1
DNAAF2
EIF2S1
ATP6V1D
SPCS1
GLT8D1
E2F3
PKP4
CCDC148
SREK1
CFAP20
ZIM2
PEG3
E2F8
PPP2R5E
MNS1
NEK11
ASTE1
IFT57
MYADM
POLR3H
ERICH6
FBF1
PARS2
PUM1
FAM86B1
PLIN5
LRG1
RUFY1
HM13
GLRX5
SSC5D
NAT14
STK35
TMEM74B
OSBPL2
CCDC74B
CFAP299
SPATA17
GPATCH2
BRMS1
B4GAT1
ZNF775
RABL2A
QTRT1
POLD2
SPATA33
KIAA0319
MSMO1
EIF2S2
DNAL4
ZNF165
ZDHHC1
BAIAP2
TSPAN19
LRRIQ1
ZMAT2
RUFY2
CEP164
CHERP
DUSP6
STK16
GLB1L
TMEM88
NAA38
CYB5D1
TRMT12
ROPN1L
TEX264
PLCH1
IRAK1BP1
CCDC74A
CRIP1
MCM7
AP4M1
P4HA1
GAS8
DBNDD1
IFT74
RABL2B
RNF223
SPAG1
MARK3
GLRA1
GNAT2
AMPD2
LMLN
FLACC1
ZNF664-RFLNA
ZNF664
CCDC92
RASL10A
GAS2L1
DENND2B
TMEM91
B9D2
TCTN2
FAM227B
DTWD1
SDE2
MDH1B
FASTKD2
BAIAP3
TIGD4
ARFIP1
PEF1
SLC25A22
LYRM4
FARS2
ST18
DNAH12
WWOX
BBS12
SLC27A1
DNAJC24
DCDC1
ZNF214
NLRP14
UBL3
DUSP18
TNRC6A
NEMP1
NAP1L1
GOLGB1
WDR19
ZNF862
MTRNR2L9
STK36
RNF25
LMAN2L
AJM1
NQO1
SLC35E1
HSPA12A
ENO4
MTF1
TCTN1
ENTPD7
NACAD
UBXN2B
MEAF6
DYRK4
KLHDC10
CCNB1
TPST1
RAB3GAP1
FAM120B
TOR3A
PBXIP1
JUND
TTC7A
MCFD2
TIMM21
FBXO15
ING1
ALKBH5
FOXO6
REPIN1
DNAL1
XPR1
TPM3
PGD
SPATA6
FER
C4orf48
HNF4A
CLBA1
NOXO1
GFER
KCNN1
DSTN
BFSP1
HTR5A
SRF
PPP5C
PNMA1
PPP1R42
SPATA7
COPB2
EPN1
SFI1
PCF11
CENPH
RSPH4A
RSPH3
SLC25A46
HSPA1B
PLXNB1
DNAAF6
CEP43
TMEM134
NDUFAF3
DALRD3
THG1L
ZNF76
DHX40
DIS3
SSX2IP
C2orf50
PSMB5
ARL2BP
GNG3
BSCL2
PLA2G2A
TAGLN2
CYSTM1
MBNL2
SHOC2
BBIP1
CIRBP
MICOS10-NBL1
MICOS10
NBR1
ZNF396
WIPF2
GPSM3
FHAD1
ZNHIT2
MRPL49
FAU
WDPCP
MDH1
IPO11
NIM1K
TMX2
MED19
PDCD6
UFSP2
C4orf47
TOGARAM1
KLHL28
SMC1A
RIBC1
CFDP1
HDGF
TMEM95
KCTD11
ZC4H2
LY6G5C
ERI3
GNL2
GDE1
CCP110
C19orf84
KATNAL1
DNAJC25-GNG10
DNAJC25
FRG2C
CYP46A1
GLIPR1L1
CAPS2
GPN1
CCDC121
TTC5
DNAH9
PIM2
SH3BGR
LCA5L
GMPPB
AMIGO3
SMIM5
FAM47E-STBD1
FAM47E
CFAP157
TMEM232
PLTP
IFT52
SEC61A2
RPF2
TRIM39-RPP21
TRIM39
CPD
TNKS1BP1
VEGFB
LOC114841035
FKBP2
KLF4
MAK
SERTAD3
MAFG
LRRC10B
CELSR3
TMEM254
CBX8
TMEM209
SSMEM1
PCM1
LRP4
SF3B5
DLGAP3
ARMC9
BSG
HYDIN
PARD6A
ACD
VAV2
ARL13B
GDF11
DMTN
JUN
TOMM7
WDR13
CHD4
UMAD1
DNAH6
CYB5B
FBXL14
HNRNPF
LCORL
TRAF3
TTC21A
GORASP1
L1CAM
UBFD1
EARS2
MUC3A
RTBDN
PPP1R7
PASK
TTC8
ZFAT
CENPS-CORT
CENPS
WDTC1
CSTF3
CNOT8
PNP
METRN
ANTKMT
TOB2
EMC3
SMIM17
CRIP2
GALK2
COPS2
ARMC2
MED25
FUZ
MAPK11
GEMIN8
G3BP1
CCAR2
FAM227A
CBY1
ZNRF1
ZBTB40
SYVN1
TAF6L
CDKN2A
CXXC1
ELAPOR1
C1orf194
ATXN1
DIXDC1
TRUB2
COQ4
AOPEP
ATG9B
ABCB8
SNIP1
DNALI1
TCTEX1D4
BTBD19
IQUB
ALPK3
UBE4B
TREX1