ChIP-Atlas: Target genes

Potential target genes for RFX3

Query protein: RFX3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX23177032 | PLC/PRF/5
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RFX3's Target genes

◢ RFX3: Average

◢ SRX2636179: Hep G2

◢ SRX2636180: Hep G2

◢ SRX23177031: PLC/PRF/5

◣ SRX23177032: PLC/PRF/5

◢ RFX3: STRING

MTRNR2L1
DUX4
COL23A1
PIAS4
GPR137
RABL6
CCDC183
TLCD5
ARHGEF12
MTRNR2L2
MSH3
DHFR
GTPBP6
FAM240C
C2CD4C
FRG2C
GPR35
NOC4L
DDX51
ARHGAP45
FARP2
AGRN
PLEKHG4B
ZBBX
TMEM9
NPAS4
C1orf159
CFAP54
NDRG4
NEK10
LRRC6
ZNF497
A1BG
YIF1A
TMEM151A
CHURC1-FNTB
CHURC1
DYNC2LI1
TTC23L
FOXJ1
POLD3
KLHL18
KIF9
WFDC3
DNTTIP1
PRR29
ICAM2
ZBTB46
SDCBP2
PITPNM1
ZNF84
DUSP15
CFAP36
BTBD3
RUNDC1
PTGES3L-AARSD1
PTGES3L
CEP41
C11orf49
LRGUK
ACOX3
SNRPF
POLL
DPCD
DAD1
ABHD4
PDE4A
HSDL1
DNAAF1
KIF3B
MFSD4B
AHI1
LOC112694756
UBL5
PIN1
FKBPL
ATF6B
NPHP1
MTLN
POLRMT
FGF22
ZSWIM1
SPATA25
SPATA2L
BRCA1
FANK1
TNNI3
DNAAF3
ITFG2
PES1
TOR2A
RAB11FIP2
TEKT1
EBNA1BP2
CFAP57
EFHC1
TM9SF1
IPO4
IQCH
AAGAB
DYNC2I1
BBS1
INTU
QTRT1
PMVK
ZNF584
RNF225
FZR1
DOHH
DYNLRB2
RHOD
CARS1
DNAH7
ANKRD42
ACTR6
OVCA2
MRPS2
C9orf116
SPEF1
CENPB
CDC25B
ZFHX2
THTPA
PSMC3IP
CEP112
TTF1
CFAP77
TTLL1
NME9
CSNK1G2
PRKCG
CCDC34
SYS1
C16orf46
USP30
C7orf50
SHQ1
CCDC113
TRIT1
FAM110A
CAMK2N1
DCP1B
EPHX3
PRKN
PACRG
MEAK7
STK32C
LMBRD1
RFC5
AGTRAP
QTRT2
CCDC191
ACACB
ADGB
LRPAP1
HSP90B1
LRRC27
CTU1
PI4K2A
MORN4
AP1S1
CCDC8
CFAP69
WDR93
PEX11A
UBE2O
JAM3
AANAT
UBXN6
WDR35
ANGEL1
ARFGAP1
S100B
ABI2
THNSL1
POR
PFDN5
MYG1
NRSN2
LENG1
UBXN11
CSNK1G1
DAGLA
TSNAXIP1
RANBP10
BDP1
EFCAB12
GNG14
FBXW9
AZIN2
SLF1
KIAA0825
CFAP43
XKR7
SPAG8
HINT2
ABAT
MOCS3
DPM1
RSPH14
RALB
RAB36
TXNDC17
SCRN2
OSBPL7
MRPL10
LRRC46
KIAA0753
DYNLL1
AGPAT5
NCOA5
PPP1R21
DYNC2H1
LARGE1
HSPH1
ARL6
CRB2
RPP38
ACBD7
RPL35A
LMLN
IQCG
CCDC39
SIK3
GRIN1
TTC30A
KIF23
SLC37A1
RSPH1
FAM161A
SPEF2
OTUB1
SPAG16
FAM204A
PREPL
CAMKMT
KATNIP
GTF3C1
PIFO
PGP
E4F1
ARMC3
INSM2
TBCEL-TECTA
TBCEL
STK11IP
LZTFL1
PCOTH
MIPEP
C1QTNF9B
NUCB2
DMWD
RNF141
C2orf73
TRIP12
FBXO36
C11orf94
POMT2
KRT8
GSTZ1
SERINC3
PKIG
ZNF446
ZNF324
NR2F2
STOML2
PIGO
FAM214B
COG7
MORN2
DHX57
MIB2
B9D1
CALR3
C19orf44
SPTBN2
TP53BP1
MAP1A
NR1D1
GTF2E2
CHN1
DNAJC1
ELMOD2
CRNKL1
CFAP61
ENDOV
ZNF324B
FAM24A
DUSP3
CFAP97D1
ULK4
HMG20B
MAFA
YIPF3
POLR1C
LRRC73
PROSER3
LIN37
HSPB6
NUDT2
KIF24
IQSEC3
SF3A1
CCDC157
YWHAQ
TSPYL4
DSE
SORBS2
PATZ1
ALLC
WDR54
C2orf81
TRAPPC9
RNF40
CCDC189
DNAJC16
CASP9
PPAN-P2RY11
PPAN
P2RY11
ANGPTL6
PRKAR1A
KIAA1841
TOM1L2
DRC3
CHCHD3
PTPN1
TTC30B
RALGAPA1
FAAP24
CEP89
TMF1
C17orf97
SF1
PER2
SIPA1L1
BSPRY
DRC7
CATIP
CYTH2
TMX4
CCDC130
SMG7
VAT1
RND2
MOK
LIN28A
ETFRF1
CFAP94
RFC2
MBD4
IFT122
SRFBP1
TMEM107
IQANK1
FAM83H
ZFP90
TOP1MT
RHPN1
PHC1
ZMYND12
PPCS
CCDC30
TADA2B
CCDC96
TMEM231
GABARAPL2
DNAH2
ZCCHC3
C20orf96
CACUL1
LRRC56
HRAS
TASP1
KLHL38
ZC3H10
RPL41
ESYT1
KIF6
FBXL13
ARMC10
SEMA4B
PACRGL
TSEN2
PRKAR1B
ZNF473
VRK3
MYADM
IFT81
MUC1
RNF139
L3MBTL2
ING2
DYRK1A
ENTPD5
BBOF1
PRMT5
SYT5
FSIP1
SPATA2
CFAP53
CFAP126
NDUFA5
DNAAF4
RFX1
ARL4A
ID1
TMEM53
ARMH1
YWHAE
JUNB
DNAJB13
MIER1
DNAI4
TRIM36
H1-10
IQCC
DCDC2B
CCDC28B
GTF3C4
DDX31
DLG4
ACADVL
DYNC2I2
NQO2
NAA40
TBC1D19
PRKCSH
METRN
FBXL16
CCDC151
PHOSPHO2
CCDC173
ELP1
ABITRAM
SPATA4
KNOP1
IQCK
NECTIN4
KCNH7
IFT22
CFAP58
PALM3
TMEM211
POFUT2
THOP1
SGTA
ANO3
RPS27A
GSG1
CLHC1
WHRN
NYAP1
DNAJA1
APTX
CPLANE2
ZNF184
U2AF2
CCDC106
TTC26
CFAP46
STK19
LOC110384692
DXO
C4B_2
C4B
C4A
RTF2
CEP162
USP54
RFX3
FAM183A
CEP152
BTRC
C20orf27
PAK4
ODF3L1
SPICE1
TLX2
PCGF1
LBX2
OSCP1
SLC25A14
FBXW7
LOC101928764
FOXN2
NUMA1
LRTOMT
NDUFS3
KBTBD4
HMGN2
FAM180B
RPGRIP1L
FTO
PCSK1N
ERAS
IFT172
GCKR
FNDC4
MKS1
METTL15
KIF18A
POLI
TRAF3IP1
SETD1A
SAXO2
ORAI3
EFL1
ALS2
WDR73
NMB
MARCHF8
KMT5C
CLUAP1
C16orf90
TBC1D32
PRDM4
EFCAB10
ARHGDIB
LOC728392
SPATA13
NME7
BLZF1
TSGA10
C2orf15
CCDC65
RNF39
PPP1R11
POLR1H
FAM131C
PJA2
ARRDC4
ITSN1
CRYZL1
ZNF768
ZNF747
TFIP11
RPN1
SFXN2
FAM214A
ARL3
UBN2
TMEM67
ERF
RHBDD2
REEP6
PCSK4
BBS5
IFT140
CRAMP1
SPAG9
UVRAG
TPGS1
DYRK3
MAP3K14
HMGCR
ODF2
PCNX4
TCTN3
NEK2
LINS1
ASB7
FAM187A
EFTUD2
CCDC103
ACAP2
VTA1
NMBR
MORN3
TNPO1
FANCI
PICK1
CXADR
ID2
PPP2R1A
SLCO2B1
MRPS21
INTS8
C16orf71
BCL2L1
ANKS3
SLC25A27
CYP39A1
PCGF2
PODNL1
DCAF15
TMED8
SAMD15
PUM1
WDR90
YWHAZ
ZNF579
ZNHIT1
PLOD3
AHNAK
PIH1D2
NKAPD1
IQCE
C11orf97
BRAT1
CCDC175
PARD6A
GAS8
DBNDD1
C16orf86
ACD
TBC1D16
CCDC40
TULP3
MSMO1
KCNK4
BAD
ZC3H18
IFT57
ZFYVE28
CFAP99
MZF1
AXDND1
MCM7
AP4M1
COQ7
PIK3R2
NKX1-1
MNS1
SPACA9
AK8
HSPBP1
BRSK1
TSPAN31
MARCHF9
CDK4
THAP10
SLC25A3
LRRC49
LPIN2
DUSP1
SUN3
SPG21
C7orf57
NEURL2
TENT5C
EIF2S2
ZNF24
MUL1
PRR7
DBN1
LOC390877
KLF16
MLEC
TRAPPC2L
GALNS
TUBAL3
NET1
TEX9
GNAT2
AMPD2
FAM151B
RABL2B
PBX3
RER1
MORN1
RPS5
TMEM234
EIF3I
PARS2
PKP4
CCDC148
CCDC146
EHD1
DAAM1
CFAP20
SPCS1
GLT8D1
TIGD4
ARFIP1
COPS3
PPP1R16A
FOXH1
RBKS
FOXN3
BABAM2
FAM86B2
CCDC187
SPATA18
PANK2
CATSPERG
TDRP
RRP12
RNF5
NEK11
ASTE1
AGPAT1
AGER
MAF1
CYC1
CFAP298-TCP10L
CFAP298
TEDC1
CRIP2
CRIP1
FAM86B1
MTRNR2L8
CCDC57
TSPO
MCAT
LRRC23
SPATA24
PROB1
PEF1
E2F3
SSBP4
CEP295NL
VPS53
ZNF775
PELI1
ZEB1
BAIAP2
MAP1LC3A
DUSP18
HIGD2B
BBS4
LMAN2L
CDC37
ALMS1
TCTN2
MSH5
DDAH2
CLIC1
CCPG1
C15orf65
NAA20
LTV1
WDR1
MYCBP
GJA9
CALML4
UBXN2B
ERICH6
MAPRE3
GLRX5
CEP135
MX2
KIAA0319
LOC388282
KIFC3
SETD4
CBR1
FAM185A
CENPH
ZNF628
SSC5D
NAT14
PGD
ITGB3BP
EFCAB7
SRSF7
ZIM2
PEG3
SDE2
DNAAF2
PPP1R42
HTR5A
BAIAP3
CCDC74A
SREK1
FOXO6
ZNF165
OR1F12
ERCC1
GTF2F1
ATP23
RUFY2
RPL36
MICOS13
HSD11B1L
ZNF664-RFLNA
ZNF664
CCDC92
DUSP6
FAM174A
THBS3
MTX1
RIN1
BRMS1
WWOX
DNAJC10
MFRP
KDELR3
KCNJ4
C1QTNF5
ZNF862
TECPR2
CINP
EIF2S1
ATP6V1D
PLAA
IFT74
DZIP1
PRR3
GNL1
CEP126
ANGPTL5
GOLGB1
FBF1
HSPA12A
ENO4
SPATA17
GPATCH2
RASL10A
GAS2L1
BRD3OS
NQO1
HSBP1
CEP164
TRMT12
OSBPL2
PLEKHB1
E2F8
TRUB2
COQ4
TUBE1
FAM229B
ESRRA
CATSPERZ
TMEM91
B9D2
DENND2B
STK36
RNF25
CHERP
COPB2
MID1IP1
MICOS10-NBL1
MICOS10
JUND
IQCN
TUBA4B
TUBA4A
STK16
GLB1L
UBL3
TNRC6A
MARK3
POLR3F
DZANK1
PLIN5
LRG1
INKA2
DNAJC24
DCDC1
TMEM88
NAA38
FAM120B
CYB5D1
FAM227B
DTWD1
SLC35A2
PIM2
DSTN
BFSP1
POLR3H
MPZL3
NAP1L1
ARF3
KIAA1522
ROPN1L
HM13
TSPAN19
POLD2
LRRIQ1
EPN1
FLACC1
LYRM4
FARS2
C3orf49
TIMM21
FBXO15
DNAL1
B4GAT1
RUFY1
GTF2IRD2
CELSR3
NAGPA
ING1
CARS2
SHOC2
BBIP1
CYSTM1
TPST1
TOR3A
PHPT1
AJM1
CYP46A1
BBS12
ZDHHC1
PYGO2
PBXIP1
LOC101928120
C2orf50
FAM47E-STBD1
FAM47E
ERI3
ZMAT2
HARS2
HARS1
HNF4A
BSG
DNAH12
TTC16
PTRH1
CFAP157
RNF223
TCTN1
SLC25A46
ZNF76
CCDC74B
SPATA6
SPAG1
PPP2R5E
POLR2K
UFSP2
C4orf47
SIK1B
SIK1
SERTAD3
GTF2IRD2B
TOGARAM1
KLHL28
RAB3GAP1
FAXDC2
CNOT8
DNAH6
RABL2A
PLCH1
CCP110
TRIM39-RPP21
TRIM39
MEAF6
IRAK1BP1
FER
DNAJC25-GNG10
DNAJC25
PROS1
ARL13B
TEX264
GNL2
DNAL4
GPN1
CCDC121
C4orf48
SF3B5
GLRA1
GNG3
BSCL2
PDCD6
NDUFAF3
DALRD3
C12orf43
ENTPD7
XPR1
P4HA1
ICA1L
SFI1
GEMIN8
EIF4ENIF1
EMC3
CFAP299
NBR1
MTF1
NEMP1
PLCD3
ACBD4
ARL2BP
SPATA7
SPATA33
MFSD6
WIPF2
HYDIN
ZNF214
NLRP14
SLC27A1
NXNL1
ZASP
SAP25
DHX40
TARBP2
REPIN1
MAP3K12
TPM3
SYVN1
NACAD
CCNB1
PLA2G2A
SYNGR3
NOXO1
GFER
TTC7A
MCFD2
FASTKD2
CBX8