ChIP-Atlas: Target genes

Potential target genes for RFX3

Query protein: RFX3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2636179 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RFX3's Target genes

◢ RFX3: Average

◣ SRX2636179: Hep G2

◢ SRX2636180: Hep G2

◢ SRX23177031: PLC/PRF/5

◢ SRX23177032: PLC/PRF/5

◢ RFX3: STRING

C1orf159
NPAS4
ZBBX
NDRG4
CFAP54
TMEM9
YIF1A
TMEM151A
DYNC2LI1
NEK10
CHURC1-FNTB
CHURC1
ZNF497
A1BG
PRR29
ICAM2
LRRC6
MFSD4B
WFDC3
DNTTIP1
TTC23L
PITPNM1
ACOX3
ZBTB46
AHI1
POLL
DPCD
FOXJ1
ZNF84
TEKT1
POLD3
EBNA1BP2
CFAP57
RUNDC1
PTGES3L-AARSD1
PTGES3L
C11orf49
KLHL18
KIF9
DUSP15
POLRMT
FGF22
CFAP36
CEP41
TTLL1
USP30
SDCBP2
PES1
PDE4A
LRGUK
DAD1
ABHD4
LOC112694756
TNNI3
DNAAF3
SNRPF
SPATA2L
CARS1
BBS1
ITFG2
ANKRD42
AP1S1
ZNF584
RNF225
QTRT1
NPHP1
MTLN
DYNC2H1
HSDL1
DNAAF1
ZSWIM1
SPATA25
NEURL2
C16orf46
BTBD3
RFC5
GRIN1
SHQ1
TOR2A
ADGB
DYNC2I1
HSP90B1
FANK1
CSNK1G2
C7orf50
STK32C
LRRC27
PMVK
RAB11FIP2
IQCH
AAGAB
QTRT2
CCDC191
EPHX3
JAM3
INTU
RHOD
EFHC1
EFCAB12
UBL5
PIN1
FZR1
DOHH
FAM110A
OVCA2
KIF3B
CEP112
CCDC34
AGTRAP
CAMK2N1
FKBPL
ATF6B
UBXN11
BRCA1
ARL6
MRPS2
C9orf116
DYNLRB2
PSMC3IP
PIFO
THNSL1
PRKCG
ARFGAP1
RNF141
MYADM
SCRN2
OSBPL7
MRPL10
LRRC46
MEAK7
NRSN2
DAGLA
ZNF324B
UBXN6
TM9SF1
IPO4
ABI2
ARMC3
CCDC113
INSM2
LMBRD1
POR
RALB
SLF1
KIAA0825
WDR93
PEX11A
KATNIP
GTF3C1
SPEF1
CENPB
CDC25B
SYS1
ACTR6
SIK3
PRKN
PACRG
TRIT1
DCP1B
CFAP69
BDP1
SPAG8
HINT2
ZFHX2
THTPA
NME9
ACACB
GNG14
FBXW9
DMWD
TTC30A
SPEF2
CSNK1G1
RPL35A
LMLN
IQCG
KIF23
UBE2O
AANAT
DYNLL1
PFDN5
MYG1
NUCB2
STOML2
PIGO
FAM214B
TXNDC17
KIAA0753
LENG1
LZTFL1
CHN1
FAM161A
HSPH1
TTF1
CFAP77
PI4K2A
MORN4
WDR35
STK11IP
FAM204A
CCDC39
LRPAP1
OTUB1
AZIN2
CCDC8
TSNAXIP1
RANBP10
AGPAT5
XKR7
DNAJC1
SERINC3
PKIG
YIPF3
POLR1C
LRRC73
CYTH2
MIB2
SLC37A1
RSPH1
ZNF446
ZNF324
NR2F2
CFAP43
TRIP12
FBXO36
GTF2E2
ANGEL1
SPAG16
NCOA5
C11orf94
HMG20B
S100B
SEMA4B
LARGE1
RPP38
ACBD7
TP53BP1
MAP1A
PGP
E4F1
CTU1
B9D1
IQSEC3
MOCS3
DPM1
RSPH14
RAB36
SPTBN2
MAFA
DUSP3
CFAP97D1
TSEN2
IQCC
DCDC2B
CCDC28B
KRT8
DNAH7
PCOTH
MIPEP
C1QTNF9B
TOM1L2
DRC3
SF3A1
CCDC157
CHCHD3
TMF1
NR1D1
ENDOV
CRNKL1
CFAP61
ULK4
C2orf73
PRKAR1B
SMG7
SRFBP1
CALR3
C19orf44
YWHAQ
C17orf97
TBCEL-TECTA
TBCEL
CRB2
POMT2
GSTZ1
TOP1MT
RHPN1
VAT1
RND2
ETFRF1
CFAP94
SYT5
ABAT
ALLC
MORN2
DHX57
NUDT2
KIF24
RNF40
CCDC189
CATIP
TSPYL4
DSE
TTC30B
PTPN1
DNAJC16
CASP9
PPAN-P2RY11
PPAN
P2RY11
ANGPTL6
PREPL
CAMKMT
RFC2
ZC3H10
RPL41
ESYT1
SORBS2
PER2
TRIM36
BSPRY
TADA2B
CCDC96
COG7
MBD4
IFT122
PPP1R21
ELMOD2
MOK
FAM24A
SF1
YWHAE
PRKAR1A
RALGAPA1
PHC1
SIPA1L1
PRMT5
LRRC56
HRAS
PROSER3
LIN37
HSPB6
IQANK1
FAM83H
TMEM231
GABARAPL2
IFT81
WDR54
C2orf81
TMEM107
TASP1
ZNF473
VRK3
FAM131C
CACUL1
CCDC130
MUC1
DNAAF4
KLHL38
POFUT2
KIAA1841
FAAP24
CEP89
TMX4
RFX1
TRAPPC9
PALM3
RNF139
KCNH7
OSCP1
ZCCHC3
C20orf96
DNAH2
FBXL13
ARMC10
PACRGL
SLC25A14
NECTIN4
KIF6
IFT172
GCKR
FNDC4
ZFP90
NQO2
H1-10
SPATA2
RTF2
JUNB
GSG1
LIN28A
CPLANE2
METTL15
KIF18A
CFAP53
PATZ1
U2AF2
CCDC106
ODF3L1
WDR73
NMB
DNAJA1
APTX
SPATA4
GAS8
DBNDD1
ANO3
SFXN2
ARL3
DRC7
ING2
CEP162
SPATA13
DLG4
ACADVL
NME7
BLZF1
RPS27A
CLHC1
NUMA1
LRTOMT
L3MBTL2
CLUAP1
C16orf90
CEP152
IFT22
DYRK1A
SETD1A
ORAI3
DYRK3
ZMYND12
PPCS
CCDC30
ARHGDIB
KNOP1
IQCK
MIER1
DNAI4
ID1
TMEM53
ARMH1
FAM183A
ZNF768
ZNF747
NAA40
PHOSPHO2
CCDC173
SPICE1
CFAP126
TSGA10
C2orf15
PUM1
CCDC65
ENTPD5
BBOF1
FSIP1
ACAP2
STK19
LOC110384692
DXO
C4B_2
C4B
C4A
SAXO2
EFL1
THOP1
SGTA
WHRN
RNF39
PPP1R11
POLR1H
PCSK1N
ERAS
MORN3
USP54
LOC728392
ELP1
ABITRAM
BBS5
GTF3C4
DDX31
TMEM211
KMT5C
NDUFA5
PRKCSH
CCDC151
PJA2
DYNC2I2
TRAF3IP1
IFT57
NYAP1
MKS1
LINS1
ASB7
ZNF579
DNAJB13
RHBDD2
MCM7
AP4M1
BTRC
TBC1D32
C20orf27
TLX2
PCGF1
LBX2
UBN2
HMGN2
PICK1
TMEM67
SPAG9
CFAP46
CXADR
INTS8
METRN
FBXL16
TCTN3
TNPO1
CFAP58
MSMO1
MARCHF8
RABL2B
FANCI
NKX1-1
ARL4A
LOC101928764
PAK4
MNS1
FBXW7
PRDM4
TPGS1
MRPS21
GNAT2
AMPD2
ZC3H18
AHNAK
TSSK4
FAM214A
FOXN2
POLI
TTC26
RFX3
PCNX4
EIF2S2
TIGD4
ARFIP1
NDUFS3
KBTBD4
FAM180B
MAP3K14
SLC25A3
TULP3
ARRDC4
CENPH
PCGF2
DUSP18
RPGRIP1L
FTO
FAM187A
EFTUD2
CCDC103
GPR137
KCNK4
BAD
TSPAN31
MARCHF9
CDK4
TUBAL3
NET1
UBXN2B
TFIP11
VTA1
NMBR
YWHAZ
MUL1
PGD
TBC1D19
PEF1
ODF2
COQ7
TEDC1
CRIP2
CRIP1
ITSN1
CRYZL1
ZNF184
SPG21
KLF16
IFT140
CRAMP1
TRUB2
COQ4
REEP6
PCSK4
LOC390877
THAP10
LRRC49
MLEC
TCTN2
HSPBP1
BRSK1
PARS2
SLCO2B1
TMEM234
EIF3I
PPP1R42
LMAN2L
ZFYVE28
CFAP99
EFCAB10
C11orf97
FAM86B1
ALS2
C16orf71
ANKS3
HTR5A
CCDC175
PARD6A
C16orf86
ACD
PRR7
DBN1
PPP2R1A
TEX9
NEK11
ASTE1
BAIAP2
SPCS1
GLT8D1
UVRAG
ZNF775
FOXO6
CFAP20
PIH1D2
NKAPD1
SPATA24
PROB1
TRAPPC2L
GALNS
PKP4
CCDC148
RPN1
HMGCR
WDR90
COPS3
SDE2
TMED8
SAMD15
GLRX5
RBKS
BABAM2
AXDND1
E2F3
RRP12
ERICH6
ERF
EHD1
FAM86B2
SPATA18
CATSPERG
LPIN2
PODNL1
DCAF15
ERCC1
BAIAP3
CCDC74A
MICOS10-NBL1
MICOS10
DAAM1
VPS53
NEK2
HIGD2B
BBS4
ZNF628
SSC5D
NAT14
RNF5
AGPAT1
AGER
KIAA0319
CCDC146
PIK3R2
PELI1
BCL2L1
MAP1LC3A
CEP295NL
SLC35A2
PIM2
GOLGB1
CELSR3
ZNF24
ID2
MFRP
C1QTNF5
PANK2
CFAP298-TCP10L
CFAP298
CCDC187
ZIM2
PEG3
NAA20
LTV1
TENT5C
RUFY2
RER1
MORN1
WWOX
FAM151B
MAF1
CYC1
CCDC57
ZNF862
COPB2
ZNF165
OR1F12
TBC1D16
CCDC40
MAPRE3
CEP135
NQO1
CCPG1
C15orf65
ZNHIT1
PLOD3
HSPA12A
ENO4
DUSP1
DUSP6
PBX3
DNAAF2
TSPO
MCAT
WDR1
MZF1
TDRP
PLAA
IFT74
SLC25A27
CYP39A1
LRRC23
CDC37
MYCBP
GJA9
HSBP1
SETD4
CBR1
SPACA9
AK8
RASL10A
GAS2L1
ITGB3BP
EFCAB7
SREK1
BSG
IQCE
BRAT1
FAM47E-STBD1
FAM47E
ZEB1
TMEM91
B9D2
SUN3
C7orf57
DSTN
BFSP1
MX2
STK36
RNF25
FAXDC2
CNOT8
CYP46A1
CEP164
ATP23
DENND2B
MPZL3
RPS5
CALML4
ERI3
GTF2F1
SHOC2
BBIP1
TTC16
PTRH1
CFAP157
FBF1
FAM120B
THBS3
MTX1
KDELR3
KCNJ4
SSBP4
LOC388282
KIFC3
DNAJC10
CYSTM1
SPATA17
GPATCH2
INKA2
TNRC6A
EPN1
DNAH6
SERTAD3
RIN1
BRMS1
PPP1R16A
FOXH1
CHERP
TRMT12
EIF2S1
ATP6V1D
SIK1B
SIK1
MARK3
UBL3
TIMM21
FBXO15
PROS1
ARL13B
FAM185A
UFSP2
C4orf47
TUBA4B
TUBA4A
STK16
GLB1L
NAP1L1
FOXN3
SRSF7
DNAJC24
DCDC1
FAM227B
DTWD1
E2F8
GEMIN8
MTRNR2L2
MSH3
DHFR
TRIM39-RPP21
TRIM39
FAM174A
OSBPL2
DZIP1
DNAL1
ZNF76
MSH5
DDAH2
CLIC1
TMEM88
NAA38
CYB5D1
EMC3
PRR3
GNL1
CEP126
ANGPTL5
SYVN1
TOGARAM1
KLHL28
TOR3A
CCDC188
BRD3OS
LYRM4
FARS2
RPL36
MICOS13
HSD11B1L
C2orf50
PLCD3
ACBD4
PYGO2
PBXIP1
LOC101928120
SF3B5
PHPT1
AJM1
HNF4A
TPST1
TUBE1
FAM229B
MTRNR2L1
TREX1
SHISA5
DNAJC25-GNG10
DNAJC25
GNL2
HYDIN
ZASP
SAP25
SLC25A46
GPN1
CCDC121
PLEKHB1
TSPAN19
LRRIQ1
ROPN1L
ZNF664-RFLNA
ZNF664
CCDC92
LIN54
CENPS-CORT
CENPS
BBS12
TECPR2
CINP
JUND
IQCN
FLACC1
PLIN5
LRG1
PDCD6
G3BP1
TCTN1
CCP110
POLD2
PPP1R32
MBD1
CXXC1
DNAH12
SPATA6
POLR3F
DZANK1
KIAA1522
POLR3H
FBXL14
GTF2IRD2
HM13
GNG3
BSCL2
RAB3GAP1
TMEM232
NDUFAF3
DALRD3
TARBP2
MAP3K12
SH3BGR
LCA5L
ZDHHC1
CBX8
MID1IP1
GTF2IRD2B
NBR1
HS1BP3
ARL2BP
B4GAT1
ARF3
RUFY1
ESRRA
CATSPERZ
RNF223
WIPF2
MEAF6
XPR1
FER
SFI1
EIF4ENIF1
RHOBTB2
SPATA7
MPC2
DCAF6
ALMS1
TCTEX1D4
PLK3
BTBD19
SPAG1
POLR2K
ZMAT2
HARS2
HARS1
ING1
CARS2
C4orf48
DHX40
PPP1R7
PASK
CCDC74B
WDTC1
FHAD1
TOB2
ENTPD7
CABIN1
PLA2G2A
USP2
TAGLN2
HSPA1B
CLIP2
CFDP1
ZNHIT2
TM7SF2
FAU
REPIN1
IFT52
GLIPR1L1
CAPS2
L1CAM
IQUB
PLCH1
GMPPB
AMIGO3
C12orf43
CDC14A
NAGPA
TPM3
TTC7A