ChIP-Atlas: Target genes

Potential target genes for Hoxd9

Query protein: Hoxd9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7416187 | Embryoid Bodies
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Hoxd9's Target genes

◢ Hoxd9: Average

◣ SRX7416187: Embryoid Bodies

◢ SRX7416188: Embryoid Bodies

◢ Hoxd9: STRING

Hdx
Prdm13
Ngdn
F11r
Hoxa4
Gpr84
C1ql3
Slc37a3
Slc5a12
Map4k5
Atl1
Hoxc6
Hoxc5
Synpo
Gm973
Otp
Arhgap28
Zfp503
Notch1
Zfp473
Vrk3
Mmrn1
Atp1b4
Hoxb5
Slc9b2
Hoxb4
Hoxb3
Nkx6-1
Pdlim5
Gcnt2
Hoxd3
St3gal2
Irx1
Ccdc182
Hoxc4
Hoxa2
Hoxa1
Hoxb8
Hoxb7
Lpgat1
Icmt
Hes3
Gnat3
Nkx2-2
Hoxa6
Hoxa3
Hoxa7
Cdca8
9930104L06Rik
Hoxa5
Copz1
Epha5
Rnf165
Tmem268
Tlk1
Ttr
Foxn3
Elf5
Fam174a
Slc31a2
Arfgef1
Zadh2
Tshz1
St8sia4
Trio
Apcs
Map4
Mad2l2
Draxin
Clasp2
4430402I18Rik
Cntnap2
Rbm25
Pitpnc1
Cox7a2l
Glrp1
Tshz3
Csrnp3
Pcnx
Bend4
Dnm2
Nkx2-9
Foxp2
Crp
Slc9a9
Dip2b
Baalc
Sema6b
Ntn1
Wt1
Ccn1
Radil
Krt222
Nr3c2
Gpc6
Mllt3
Slc27a4
Mbnl1
Pla2g2d
Crlf2
Hhat
Gm15517
Dph5
Gm4737
Kmt5c
Lemd2
Wdr18
Th
Atg4c
Akap6
Tnfsf13b
Gfra3
Sgpp1
Cmtr1
Oxnad1
Dph3
Gm4791
Hhip
Scn1a
Vta1
Skida1
Rnf220
Pik3r4
Ccdc154
Adipor2
Fam135b
Rara
Ndnf
Bmp7
St8sia2
Pcnx3
Map3k11
Sptssa
Oacyl
Atp5g2
Lyrm9
St6galnac1
Olfr646
Ncam1
Tob1
Mbp
Trim23
Trappc13
Shld3
Phactr3
Tph2
Vapb
Hoxb6
Zfp143
Pou3f2
Scube2
Ing3
Actn4
Mecom
Col4a2
Col4a1
Cbfa2t3
Snca
Sox6
Enpp3
Mapre1
Phox2b
Tbc1d10b
Mylpf
Hsdl2
Hnrnpa1l2-ps2
Elmo2
Lysmd3
Tpm3
Sqor
Trib2
Emcn
Ifna9
Fmo2
Cd83
Tcstv3
Arpp21
Thrb
Aff3
Cemip2
Got2
Sema6d
Eif2s3x
Rab27a
Josd1
Gtpbp1
Tti2
Rgs5
Vdac2
Add2
Crb1
Dusp5
Xpr1
Utp4
Derpc
Chtf8
Mapk9
P4ha3
Ermn
Psd3
Chchd5
Phc2
Smad1
0610009B22Rik
Mycl
Pax8
Casp7
Acot1
Rps23
Kbtbd13
Cyp19a1
Tle3
Hand1
Gcc1
Pum1
Ccdc60
Myo10
Aven
Nsg2
G2e3
Ivl
Gja10
Tmem156
Etv3
Ccdc174
Aktip
Pakap
Tbc1d9
Stxbp6
Asap1
Pou3f3
Ppp3ca
Rprml
Narf
Asic4
Mia3
Rab30
Stox2
Tcim
Mrps33
Neurod4
Marchf4
Lta4h
Nup107
Igf1
4930550C14Rik
Pbx1
Olfr298
Pex2
Ythdf3
Zkscan1
Galr3
Meis3
Zfpm1
Cd9
Zfp330
Egr2
H6pd
Prickle1
Dus1l
Pdia5
Zfand3
Spp2
Ormdl3
Megf10
Kcnip2
Plaa
Mthfd2
Gm14092
Ccbe1
Mnx1
Pik3r1
Grpel2
Marveld3
Slc35d3
Akain1
Tom1l2
Drc3
Gtf2ird2
Zc3h12c
Aebp1
Lrrtm2
Primpol
Casp3
Ikbke
Slc4a8
Sox5
Rragd
Celf4
Tmem178b
Abcc4
Ppp2r2a
Ppp1r15b
Fyn
Gucy1a1
Chrna4
Zyg11b
Garre1
Map6
B3galt1
Rnase12
Rnase11
Cd96
Fam181a
Cda
Mutyh
Elavl4
Zfp945
Mfng
Vamp9
Supt6
Sdf2
D1Pas1
Nol4l
Nme6
Arrdc4
Zdhhc2
Tex14
Apela
Srgap3
Sertad4
Mfsd10
Taf12
H2bc6
H1f4
Gphb5
Atic
Ccnd1
Olfr1098
Scmh1
Lpo
Rtn1
Eps8
Nin
Bcas1
Ech1
Gse1
Zfp292
Fbxw15
Art3
Percc1
BC003965
Megf9
Tpbg
Aqp8
Ubqln2
Cnot2
Tcerg1
Ajuba
Dipk1a
Pfas
Ctc1
Wbp11
BC049715
Stk33
Srbd1
Flrt1
Zbtb46
Hapln1
Cfl2
Zfp672
Nms
Nrg1
Tnrc18
Zfp664
Ccdc92
Skil
Tmem132b
Lpar4
Angpt4
Dnajb5
Krt9
Ripply1
Nacc2
Thsd4
Cux1
Drd2
Adcy2
Lama5
Nebl
Mef2c
Ptprj
Kbtbd6
Evi5l
Emp3
Srpk2
Cdk17
Cryzl2
Dyrk3
Ascl1
Ngef
Neu2
Enho
Plcd3
Acbd4
Jakmip2
Sumf1
Lrrn3
Purb
Btbd3
Pgbd5
C1qc
C1qb
Sh3pxd2a
Prkg1
Rhbdd1
Nell2
Dpt
Eri3
Lrrn2
Crybg3
Exoc5
Ap5m1
Tro
Slc25a42
Zfhx4
Sybu
Mrfap1
Schip1
Fer
Lin28b
Lrrc4c
Ccdc170
Ufc1
Srxn1
Slc35f6
Tox2
Cntn1
Vkorc1
Prss53
Poc5
Repin1
Gm5111
Cacna1c
Smarcal1
Arg1
Polr3gl
Ankrd34a
Dnah5
Kmt5a
Zc2hc1c
Acyp1
Muc6
Ankrd40
Cfap58
Postn
Olfr102
Olfr100
Myt1
Abr
Sema4b
Glis2
Ear10
Txndc11
Tmem144
E4f1
Nmnat3
Wdr6
Fbxw25
Rarb
Prdm6
Dhx16
Ski
Rora
Mtarc1
Ppp1ccb
Sos1
Epb41l4b
Adam12
Ptpn3
Lrrcc1
Fam117a
Pyurf
Ksr1
Qrfp
Epb41
Gpr1
B3galt2
Ranbp9
Galk2
Cops2
Pth1r
Tcf21
Zc3h8
Ptprd
Kif21a
Cdk19
Fbxw7
Zdhhc16
Exosc1
Crtam
Vps41
Epn2
Clptm1l
Ptger2
Leng9
Ttc1
Gm14137
Gchfr
Cacna2d1
E130308A19Rik
Crb2
Phpt1
Mamdc4
Ajm1
BC107364
Cyp2s1
Tnks2
Lrrc4
Treml4
Runx1t1
Crmp1
Nr4a2
4933402D24Rik
Stk32a
Nt5c2
Tmigd1
Dbx2
H3c13
H2bc18
Hoxd8
Gmnn
Ralbp1
Rhbg
Abra
Wdr7
Ubl3
LTO1
Fam13c
H4c2
H4c1
H3c1
H1f1
Wipf1
Angptl7
Actr3b
Aftph
C2cd5
Pdpn
Zpbp
Spata48
Znrf4
Mprip
Tmed10
Alkbh5
Nrxn1
H4c8
H2ac10
Klhl5
Slc25a51
Tmem107
Kansl1l
Urm1
Mtif3
Flnb
Ccdc33
Tmem100
Ackr4
Fzd8
Pacrgl
Epc1
Coq10a
Sall1
Mrps36
Sh3bp5
Cnot1
Ints14
Nudt15
Rabl2
Osbp
Fzd10
Man1a2
Nedd9
Fis1
Krt20
Rapgef6
Qsox2
Zfp334
Mlip
Fam222a
Rufy3
Tbl1x
Sinhcaf
Srek1ip1
Ssr3
Cwc27
Adh6b
Nr2f2
Tle1
Sdc1
Racgap1
Phgdh
Mn1
Serpinb8
Spink7
Lypd1
Zfp41
Natd1
Agk
D7Ertd443e
Btbd8
Atxn7l3b
Atp8b4
Mrap
Lamc2
Kcnk4
Rpl3
Wdyhv1
Cables1
Gnb5
C2cd4a
Gm9376
Fam78b
Rnf4
Ddx39b
Dad1
Abhd4
Rere
Col6a5
Vamp1
Mep1a
Slc25a25
Naif1
Ptger4
Tmem255a
Gbx2
Plch1
Sprr2i
Tfpt
Prpf31
Myf5
Cox20
Hmx2
Gtf3c6
Arpp19
Wnk1
Snap25
Arid1a
Tfb1m
Ubr2
Atp6v1g1
Alyref2
Mup19
Pyroxd1
Mup2
Mup15
Asf1b
Smarcad1
Sdk2
Med25
Fuz
Tjp1
Rps26
Eif3c
Ctbp2
Ccdc167
Sf3a2
Plekhj1
Rtcb
Tubb4b
Ift52
Rab28
Atp5l
Zfp628
Hoxa9
Eef1akmt1
Gm3448
Gm3417
Tcte3
Ermard
Maml3
Slc7a1
Nrp2
Uts2b
Scp2
Vgll4
Atg2a
Rap2b
Marchf10
Zfp608
Scml4
Spata7
Gpr19
G6pc2
Celf3
Iglon5
Lgals2
Trerf1
Irx6
Vmn2r23
Tmem60
Phtf2
Slc9a6
Btg3
Prkag2
Aldh3a1
Nr2f1
Smug1
Ndst1
Tshz2
Cstf2t
Pabpc1
Pmpcb
Sstr2
Ift46
Zfp651
Vps29
Rad9b
Dnajb2
A630095N17Rik
Sox2
Fmc1
Nek1
Eppin
Il5ra
Mmp28
En1
Spag9
Ush2a
Igsf5
Bco1
Gdf5
Ptn
Khdc4
Zswim5
Pfkp
Rfx4
Sall4
Cacybp
Spen
Zfp697
Grid2
Sc5d
Lratd2
Zbtb18
Hpgd
Mapk6
Olfr1167
Fndc3a
Rab40c
Cldn34d
Esrrg
Dctn3
Arid3c
Ndufaf2
Lmbr1
Gpn3
Fam216a
Uchl4
Ube2o
Tcta
Rhoa
Slc14a2
Prkab2
Fli1
Shisa9
Igsf9
Thnsl1
Enkur
Akr1cl
Tgif1
Dach1
Gja1
Padi4
Gask1b
Eda
Mup20
Osbpl9
Zc4h2
Lrp12
Gm6588
Fam160a1
Mlkl
Dipk1b
Nrp1
Ttc21b
Parm1
Gsk3a
Cpsf4l
Pccb
Tspyl4
Slc38a2
Fhdc1
Itgb8
Mrpl4
Nkx1-2
Nemf
Nfe2
Rabep2
Nop53
Dll4
Slx4ip
Mkks
Abca7
Wdr41
Atp6v0e2
Ldhal6b
Cldn14
C8b
Lrrc15
Usp29
Peg3
Trmt12
Cntn5
Dcp1b
Akirin2
Sec14l5
Ammecr1l
Prdm10
Ezh2
Lrrc18
Mettl2
Golgb1
Cad
Rabgap1l
Hspa8
Cul3
Cep120
Kbtbd8
Rbm5
Meox1
Csf3
Cdh6
Dars
Gsg1l2
Glp2r
Caskin1
Mlst8
Micu3
Gns
Unc93a
Olfr689
Psmd5
Cutal
Rubcn
Fyttd1
Git2
BC048671
Ankrd13a
Mybpc1
Tatdn1
Ndufb9
Gcnt7
Mapk1
4921517D22Rik
Dscaml1
Nlrp10
Eif3f
Pgk1
Lpar6
Chst8
Cpm
Ankrd53
Zfp692
Krtap19-1
Tanc1
Spink10
Fbxo38
Igfbp3
Tlx3
Slc25a39
Marcks
Agfg1
Rph3al
Rab18
Rps15a
Slc8a1
Cxxc4
Vipas39
Ahsa1
Lrrc2
St7
Camsap2
Tle4
Evpl
Rev3l
Dmtn
Abtb2
4930402H24Rik
Ypel1
Pknox2
Eya2
Cnot3
Usp4
Gpx1
Tjap1
Foxd3
Gpr12
Serinc4
Hypk
Olfr1129
Insig1
Zfp663
Ttll11
Rad18
Spon1
Rcan1
Gramd1a
Rnf130
Fgd4
Myh2
Nhlh2
Ric8b
Gfod1
Kctd7
Rab37
Traf1
Tmem87b
Mvb12a
Ogfod3
Hexdc
Maf
Calca
Itch
Eef2
Reln
Map2
Zfp521
Sh3gl3
Fam135a
Rab13
Atg10
Ip6k2
Zfp516
Ldha
Usp35
Kctd21
Hnrnpd
4932414N04Rik
Fgfrl1
Lrrn1
Sh3pxd2b
Ank2
Cnr1
Fgfr2
Tfdp2
Rcan2
Ppp2r2d
Mapk1ip1
Zfp689
Ano3
Snrpc
Mllt10
Rnmt
Fam210a
Olfml1
Zfp983
Rusf1
Dhrs3
Lipc
Dnaic2
Fam110b
Colec12
9030025P20Rik
Zup1
Tcf12
Zmiz1
Tmco5
Cox6b1
Foxp1
Nek9
Ecpas
Cdh9
Hmcn1
Prkag1
Aldh1a2
Jazf1
Pnoc
2010315B03Rik
Ptpre
Col6a6
Fam187a
Fbxl7
Gm10710
Dchs2
Trit1
Eogt
Slit3
Syt2
Shisa3
Prickle2
Mid1
Elavl2
Fam71b
Irs2
Olfr598
Camk1g
P4ha2
Trappc6b
Pnn
Galnt11
Iqsec1
Olfr305
Tmem178
Tbcel
Zmat1
Cd36
9330159F19Rik
Cacng4
Rxrg