ChIP-Atlas: Target genes

Potential target genes for HOXD1

Query protein: HOXD1
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10477188 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HOXD1's Target genes

◢ HOXD1: Average

◢ SRX10477187: Hep G2

◣ SRX10477188: Hep G2

◢ SRX360007: LoVo

◢ HOXD1: STRING

NPAS4
XKR7
IQSEC3
ING3
INSM2
DEPP1
NRL
DCAF11
NKX1-1
HTR5A
MAMDC2
TNFAIP2
LIN28A
FAM24A
MTRNR2L2
MSH3
DHFR
CELSR3
L1CAM
CPLX2
RAB37
MTRNR2L1
SLC6A12
GLRA1
PTH2R
SH2D3C
ZNF117
ERV3-1-ZNF117
ERV3-1
KCNH7
SMIM17
DUX4
ZNF48
TBC1D10B
MYLPF
ZC3H18
WDR74
STX5
MTRNR2L8
EAPP
MAPK8IP2
IL11RA
GALT
SCN1A
KRT39
RTBDN
MAST1
RANBP3
OTX1
CHGB
BARHL1
DLGAP3
EPHA10
NAA20
KRTAP5-6
SCRT1
DGAT1
FRG2C
OPA3
ORMDL3
GSDMB
RIN2
SLC45A4
LHFPL5
CLPS
HPCA
CCDC92B
BOD1L2
SRRM3
FBLN1
MYT1
MUC3A
SNAP25
SIGLEC10
KCNH6
MTRNR2L9
TECTB
VGF
SMIM19
SLC20A2
FRG2
MMP24
LRMDA
INTS12
GSTCD
ICMT
HES3
FAM3A
ZNF23
ITGB1BP1
CPSF3
SLC7A6OS
PRMT7
GRM1
FOXJ2
LOC102724770
DGCR6
STMN3
RTEL1
UNC80
TMEM230
PCNA
CDS2
KCNK12
CCDC200
METTL9
JUND
IQCN
SST
STAT1
PEX3
ADAT2
BPIFA3
NDUFAF5
ESF1
SCRT2
GDAP1L1
PLEKHM3
ZNF670
RIPPLY2
CYB5R4
EBI3
UBE2Q1
CHRNB2
GTF3C3
C2orf66
PTPRN
CDK5RAP1
NTSR2
LPIN1
DNAJC6
CCN2
NOMO3
ABCC6
STX18
STX16
DUS1L
DCP1A
RANBP2
KLF11
PSMF1
SLC39A3
FURIN
TMEM181
OGDHL
TM9SF1
IPO4
SPINK1
PPP3CA
TMC7
MOB4
NPPB
DDX1
JPH4
TRMT61B
H4C12
H4C11
H2BC15
H2AC15
SP2
COPS8
TMEM242
CCNC
PIH1D1
ALDH16A1
MRPL44
NOL7
MRPL30
MITD1
CADM3
MTF2
DPY19L4
PDXDC1
POLR3E
CWC25
SEC24A
SAR1B
PDE6D
COPS7B
C14orf93
SH3YL1
ACP1
EXT1
PTGDR2
USPL1
HMGB1
TTI2
ANK1
PRR13
CA4
MARCHF4
VTN
SEBOX
SARM1
SF3A3
RAP1GAP
NLGN4Y
MED23
SLC35A3
TMEM186
PMM2
NME1
FAM227B
DTWD1
USP30
SVOP
COMMD1
CCT4
TOMM34
STK4
BHLHE40
CHRM4
NSFL1C
PRMT5
GPR158
CACNA1B
TMEM107
SCFD1
TACO1
IRF9
PHF3
SYNGAP1
PHF1
CUTA
RPS7
TMEM41A
RAD54L2
SNAP47
JMJD4
LRRC59
C1QL2
MRPL58
ACTL6B
VNN3
TRIP4
PCLAF
ACSS3
CEMIP
CPVL
CHN2
SPNS2
RBM28
TIGD1
EIF4E2
EXOC3L4
AAR2
WDR36
SH3BGRL2
MRPL40
HIRA
LRRC37A3
KANSL3
FER1L5
HBQ1
HBA2
HBA1
SNRPB2
SYP
MRPS31
TGM1
RABGGTA
ID1
USP14
ZFR2
ATCAY
CCL20
SLC12A5
FOXJ3
NDUFS3
KBTBD4
FAM180B
CPNE4
CCDC88A
WTAP
SOD2
PTPRS
SCIMP
ZNF841
QTRT1
SLC30A6
GCFC2
NPIPA3
NPIPA2
HSPE1-MOB4
HSPE1
HSPD1
PTP4A2
MFF
UGT1A1
HDAC4
E2F3
MAP1LC3B
FBXO31
PMS2
AIMP2
TEFM
HS3ST2
KRCC1
SEZ6
SLC25A21
EXOSC6
LEMD3
HOXD1
NOSTRIN
ANKRD36
ZNF292
TSPAN10
NPLOC4
CCNL1
GOLM1
BCKDK
SOS1
HEATR5A
SHOX2
PTMA
DRG2
NUF2
EXOC2
PPP4R3B
CALM2
PET117
KAT14
TSSK4
XRN2
TSEN54
LLGL2
CASKIN2
DTD2
PGRMC2
GMEB2
PTPRH
MTIF2
RBL1
ACSL4
NUDT1
MRM2
MAD1L1
MTERF4
PLRG1
FGB
FGG
SNRPC
RGMB
KIF5C
FLRT2
CDIP1
KDM3A
PREPL
CAMKMT
PHF14
ALOX15B
SLC44A1
MRPS23
RTF2
NUP153
UCHL5
RO60
HHATL
MRPL3
JPH3
TBCD
MRPL53
MOGS
THUMPD1
BICDL1
AIP
CCL16
PRKAB2
CHD1L
METTL25
CCDC59
PYGB
PPFIA3
C19orf73
FAN1
SLC38A3
HDAC2
PKP4
CCDC148
TBC1D19
TASOR2
HMGA1
SCGN
MMAA
VWC2L
CNPY3
GUSB
GOT2
STK25
PRXL2B
TMEM222
SPRED2
ZBTB45
SLC27A5
CDKN2AIPNL
RPL27
IFI35
PLA2G10
ZNFX1
TSN
DUS2
DPEP2NB
DDX28
KIAA1586
EXOSC2
SSBP1
THOC3
FRA10AC1
ZNF703
TP53I3
SF3B6
FAM228B
STRADA
UBAP2
MTHFD2
NXF1
XYLB
HAAO
ANAPC11
ALYREF
MPC1
SAAL1
HDDC2
DNAJB3
BLOC1S5
SEZ6L2
ASPHD1
SEPTIN9
FST
POLR2J3
RBM12
CPNE1
WDR31
BSPRY
CALM1
RESP18
RBM39
SEC23A
SMG8
MRM3
GLOD4
SKOR1
PGBD5
TANK
RNF130
RMND1
ARMT1
MAP2K2
PPP1R3C
NCOA5
OPA1
TRMT2A
RANBP1
RGS3
PELATON
RSPH3
MDP1
CHMP4A
PPM1H
NOC4L
DDX51
ZNF165
OR1F12
HS6ST1
DHDDS
NFKBIA
NOP9
DHRS1
ABCA3
RRP1B
HSF2BP
CCL14
TOMM22
TGFBR2
NDUFA12
SEC14L1
TRMT6
MCM8
FAM98B
PPP1R11
POLR1H
HECTD1
ZSWIM1
SPATA25
NEURL2
CTSA
CSTF1
AURKA
KIZ
ZNF513
SNX17
EIF2B4
RAB5IF
TRMT44
ACOX3
CPNE9
PIGU
CDH1
LDAH
MIA2
ENOSF1
CLK1
LHPP
PTPN4
PPIL4
SLC11A2
PRMT8
WBP2
UNC13D
GRIA2
ZNF219
TMEM253
DCAF10
ZGPAT
ARFRP1
RFT1
GJA10
DNAJC24
DCDC1
CCDC65
LAMP1
PSMD3
INPP1
CPS1
H3C12
H2BC17
H2AC17
CBWD5
SLC18A3
CHAT
TMEM14B
CBWD3
TOX4
RAB2B
FGA
CBWD6
BCL2L11
PDE4C
SORL1
DMAP1
MLN
LOC102724265
TMEM179
TBC1D14
BIRC2
ZNF285
APOB
AATF
USP42
RBM45
PDE11A
CETN3
DEXI
CLEC16A
ZPBP2
IKZF3
PDE1C
FANCL
KCTD5
MAGOHB
PLA2G2A
SRCIN1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
TUBGCP3
CTNNB1
SLC9A1
RUSF1
ETFA
STAT3
NDUFC2-KCTD14
NDUFC2
PMVK
UQCRQ
LEAP2
GDF9
TMED4
DDX56
WASHC2C
ATIC
USP40
GOSR2
ACAD9
DNAJC25-GNG10
DNAJC25
SPAG9
RAB17
FUS
FAM222A
WASHC1
TOP3B
SNX18
SNF8
L2HGDH
DMAC2L
LYSMD3
AKAIN1
IDH3B
LOC112694756
TMEM248
H1-2
LCMT1
SULT2B1
SCAMP1
ZNF296
GEMIN7
MNAT1
CHD9
ZC3H6
THNSL1
NEK2
ATF2
AP3S1
RFC1
TCP10L
TMEM106B
DHRS2
POLR3G
MBLAC2
COPS7A
KNOP1
INSIG2
TTC30A
C20orf144
ACTL10
FAM163B
MIDEAS
NEUROD1
GBP6
POLDIP3
SIRT4
SRP54
PCK2
TTC4
MDM2
NUP54
NDUFS7
PUM2
MTHFD1L
ZNF425
ZNF398
PRCD
CYGB
MRPL55
SLC39A13
HPCAL1
ARID3A
NHLRC1
METTL21A
SNRPB
BRMS1L
GZF1
MRPL39
NET1
CABP7
CRH
RUVBL1
EEFSEC
TMEM101
STOML2
PIGO
FAM214B
ACY1
ABHD14B
ABHD14A-ACY1
ABHD14A
ZNF747
NCL
TTC26
SREK1
ZNF843
WASL
CHEK1
BMS1
RPS15A
RRBP1
SMG1
BUD13
BCL6
BANF2
METTL15
KIF18A
MYBL2
KRR1
ASF1A
SULT1A1
ELK3
ABHD12
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
FN3K
PPP1R3E
BCL2L2-PABPN1
BCL2L2
DEFB132
SUMF1
RPS15
CLVS1
HSP90AB1
GORASP2
SULT4A1
COQ9
CIAPIN1
SYN1
CFP
ELL
NOL10
CTDSPL
PPP1R1B
SLC35B2
NFKBIE
KATNA1
LONP2
ABCC11
SPOP
FITM2
DNMT3A
G2E3
ETV4
NOP56
CLUAP1
C16orf90
NOC3L
SRSF2
MFSD11
MRPL21
IGHMBP2
FAM177A1
EFCAB13
BIRC5
TOB2
BIRC6
ERLIN1
YTHDF1
HPS6
ARMH3
MRPS25
RPS6
THAP4
ATG4B
NAT10
DCP1B
IL1R1
NFAT5
EIF2D
NID1
TDP2
ACOT13
ENTPD6
ZSCAN9
HAL
CPT1A
GEMIN2
FAM207A
E2F6
AARS2
ERLEC1
ASB3
EEF1AKMT2
ABRAXAS2
PCDH8
NOL11
CIBAR2
FBXL16
C16orf72
LGR5
EEF2K
TSGA10
EIF2B5
TBPL1
RBFOX2
MAPK11
VTA1
NMBR
TVP23B
TRDMT1
ADGRG6
AGT
ZADH2
TSHZ1
CBSL
CBS
CPPED1
PIK3R3
TBC1D13
SH2D6
CAPG
ISOC1
CTBS
NOCT
CD164
ESYT3
RBPJ
WDR45B
GPC6
TTPAL
TMEM39A
POGLUT1
RNF149
HUS1
ZSCAN25
CYCS
SLX4IP
MKKS
DNAJB13
H2BC5
H1-4
GINS1
ZBTB4
SLC35G6
POLR2A
TUBB3
MC1R
NRSN1
MPHOSPH6
PLA2G15
ESRP2
TOB1
CDCA7
TTLL4
TAMM41
ATF7IP2
KIF16B
SARAF
SMIM3
NSRP1
EPHX1
RPTOR
FAM187A
EFTUD2
CCDC103
SCG3
UNC50
COA5
TRIM44
PRORP
PPP2R3C
AP5S1
MAP3K4
EDC4
PPP5C
AHCY
CNN3
CRLF3
ATAD5
TMEM212
HEXA
TAB1
C2orf42
ATG16L1
FSTL4
ADSS1
PBOV1
HINT3
LTV1
AHSG
PRDX1
DDX18
RPL31
TRIB3
EPHX2
INHBE
GLI1
RPL12
LRSAM1
CRLS1
MMADHC
TGOLN2
KHK
EMILIN1
RABL2B
HBM
APOL2
AKAP10
NGDN
ARFGAP3
TULP3
RHNO1
FOXM1
GFM2
UTP3
TRIM33
LAP3
H2BC14
H2AC14
TRIM67
MRI1
C19orf53
NEU4
SLC25A10
MRPL12
ARL6IP1
SIT1
CCDC107
ARHGEF39
WFDC3
DNTTIP1
ATP5MC2
CLN5
ERCC5
TUBB2A
HADHB
HADHA
MED15
SLC51B
CCNJ
ATP6V0A1
SCAMP5
ROCK2
OPRM1
ALG10B
MRRF
ANXA2
TBC1D22A
ZNF212
OBSL1
INHA
CEP350
COX20
SYNJ2
PRKDC
MCM4
GTF2H2C_2
GTF2H2C
C10orf88
GMCL1
VARS2
GTF2H4
SPATA2
KIAA1841
ARL14EP
PDHX
APIP
TCIM
GSPT1
ZNF473
VRK3
CDK5R2
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TRIAP1
COX6A1
GCLC
BAIAP2
ATXN2L
THOC1
POLR3B
MRPL20
CCNL2
NKD1
ATXN1L
LYZ
WDR33
CIAO3
SUGP2
PSMC2
PRM3
PRM1
DNAJC2
ARMC6
SLC39A4
CPSF1
DACT2
SIK2
ZNF460
NDUFAF3
IMPDH2
DALRD3
TULP2
SALL4
NUCB1
HNF4A
ENO1
NBPF1
TMEM169
PECR
ADNP
APOC3
APOA1
P4HA1
TSFM
HHEX
WASHC5
NSMCE2
ELK4
TRIM48
C6orf62
SRFBP1
RHEBL1
KMT2D
CD320
RHBG
IPO13
FCRLA