ChIP-Atlas: Target genes

Potential target genes for RFX3

Query protein: RFX3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2636179 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RFX3's Target genes

◢ RFX3: Average

◣ SRX2636179: Hep G2

◢ SRX2636180: Hep G2

◢ SRX23177031: PLC/PRF/5

◢ SRX23177032: PLC/PRF/5

◢ RFX3: STRING

C1orf159
NDRG4
NPAS4
ZBBX
CFAP54
TMEM9
LRRC6
PRR29
ICAM2
ZNF497
A1BG
YIF1A
TMEM151A
MAPRE2
POLL
DPCD
ZBTB46
WFDC3
DNTTIP1
PITPNM1
MFSD4B
CHURC1-FNTB
CHURC1
NEK10
ACOX3
DYNC2LI1
AHI1
TTC23L
RUNDC1
PTGES3L-AARSD1
PTGES3L
POLRMT
FGF22
POLD3
PDE4A
EBNA1BP2
CFAP57
TEKT1
C11orf49
CARS1
FOXJ1
CFAP36
CEP41
USP30
KLHL18
KIF9
SDCBP2
AP1S1
BBS1
TTLL9
DUSP15
SNRPF
PES1
GRIN1
HSDL1
DNAAF1
TTLL1
DYNC2H1
NPHP1
MTLN
TNNI3
DNAAF3
RFC5
LRGUK
AGTRAP
LOC112694756
ZNF584
RNF225
SPATA2L
DYNC2I1
CSNK1G2
EPHX3
FZR1
DOHH
QTRT1
ZSWIM1
SPATA25
CTSA
NEURL2
DAD1
ABHD4
QTRT2
CCDC191
ADGB
IQCH
AAGAB
TOR2A
RHOD
RAB11FIP2
UBL5
PIN1
C16orf46
BTBD3
STK32C
LRRC27
C7orf50
EFCAB12
FAM110A
INTU
CAMK2N1
ARL6
ZNF324B
EFHC1
SHQ1
MEAK7
ARFGAP1
KIF3B
PIFO
JAM3
PRKCG
MYADM
MRPS2
C9orf116
SCRN2
OSBPL7
LRRC46
FKBPL
ATF6B
UBXN11
CCDC34
WDR93
PEX11A
ARMC3
PSMC3IP
SIK3
PMVK
ABI2
UBXN6
OVCA2
HSP90B1
BRCA1
CEP112
CFAP69
TTC30A
NRSN2
ACTR6
THNSL1
GNG14
FBXW9
TM9SF1
IPO4
RNF141
CCDC113
DYNLRB2
NME9
SPEF1
CENPB
CDC25B
LMBRD1
KATNIP
GTF3C1
SYS1
DCP1B
PRKN
PACRG
SPAG8
HINT2
DAGLA
RALB
HSPH1
DMWD
DNAJC1
WDR35
DYNLL1
UBE2O
AANAT
SPEF2
TRIT1
POR
LENG1
FANK1
CSNK1G1
PI4K2A
MORN4
FAM204A
KIF23
CCDC39
TXNDC17
KIAA0753
LARGE1
RPL35A
LMLN
IQCG
HMG20B
CCDC8
AZIN2
ACACB
BDP1
CHN1
ZNF84
STOML2
PIGO
FAM214B
ZNF446
ZNF324
NR2F2
CTU1
GTF2E2
OTUB1
INSM2
AGPAT5
TTF1
CFAP77
RSPH14
RAB36
NUCB2
ANGEL1
XKR7
TSNAXIP1
RANBP10
LRPAP1
SLF1
KIAA0825
SLC37A1
RSPH1
SPAG16
PFDN5
MYG1
ZFHX2
THTPA
YIPF3
POLR1C
LRRC73
MIB2
CFAP43
MOCS3
DPM1
TRIP12
FBXO36
SEMA4B
C11orf94
B9D1
S100B
KRT8
TP53BP1
MAP1A
IQCC
DCDC2B
CCDC28B
NCOA5
SPTBN2
SRFBP1
ENDOV
STK11IP
CYTH2
SERINC3
PKIG
TMF1
POMT2
GSTZ1
PCOTH
MIPEP
C1QTNF9B
MAFA
CATIP
TOM1L2
DRC3
SF3A1
CCDC157
PGP
E4F1
RPP38
ACBD7
NR1D1
PRKAR1B
CHCHD3
C17orf97
TBCEL-TECTA
TBCEL
ETFRF1
CFAP94
SYT5
IQSEC3
CRB2
TSEN2
DNAH7
CRNKL1
CFAP61
NUDT2
KIF24
RNF40
CCDC189
DUSP3
CFAP97D1
TOP1MT
RHPN1
ABAT
C2orf73
CALR3
C19orf44
VAT1
RND2
TADA2B
CCDC96
PTPN1
SMG7
DNAJC16
CASP9
YWHAQ
TTC30B
RFC2
PREPL
CAMKMT
TSPYL4
DSE
MORN2
DHX57
ZC3H10
RPL41
ESYT1
PER2
YWHAE
PPAN-P2RY11
PPAN
P2RY11
ANGPTL6
PHC1
WDR31
BSPRY
MBD4
IFT122
MOK
COG7
WDR54
C2orf81
MAMDC2
IFT81
SIPA1L1
SF1
TRIM36
FAM24A
PROSER3
LIN37
HSPB6
LRRC56
HRAS
PRMT5
ELMOD2
CCDC130
SORBS2
FAM131C
PRKAR1A
RALGAPA1
TMEM231
GABARAPL2
DNAH2
KCNH7
ALLC
TRAPPC9
TASP1
RFX1
ZNF473
VRK3
IQANK1
FAM83H
KIAA1841
CACUL1
PALM3
H1-10
NECTIN4
KLHDC9
PPP1R21
GSG1
PACRGL
KIF6
ZFP90
RNF139
TMX4
FAAP24
CEP89
OSCP1
POFUT2
TMEM107
SLC25A14
IFT172
GCKR
FNDC4
SFXN2
ARL3
KLHL38
DNAAF4
LIN28A
U2AF2
CCDC106
ODF3L1
JUNB
MUC1
FBXL13
ARMC10
GAS8
DBNDD1
L3MBTL2
SPATA4
PATZ1
SPATA13
LOC728392
METTL15
KIF18A
ARHGDIB
SPATA2
TMEM211
FAM183A
ANO3
MIER1
DNAI4
DYRK1A
DNAJA1
APTX
ZMYND12
PPCS
CCDC30
CEP152
TMEM53
ARMH1
WDR73
NMB
DYRK3
CFAP53
BTRC
CPLANE2
PCSK1N
ERAS
NQO2
CEP162
WHRN
RTF2
CCDC65
TSGA10
C2orf15
NME7
BLZF1
PUM1
BBS5
DYNC2I2
DLG4
ACADVL
ING2
SPICE1
PRKCSH
CCDC151
PHOSPHO2-KLHL23
PHOSPHO2
CCDC173
IFT22
NUMA1
LRTOMT
CFAP126
MKS1
DNAJB13
KNOP1
RPS27A
CLHC1
THOP1
SGTA
SAXO2
EFL1
ACAP2
ID1
SETD1A
ORAI3
NKX1-1
ENTPD5
BBOF1
HMGN2
LINS1
ASB7
MORN3
ZNF579
NAA40
NYAP1
PICK1
IFT57
MCM7
AP4M1
FSIP1
ZCCHC3
C20orf96
CFAP46
UBN2
ELP1
ABITRAM
GTF3C4
DDX31
USP54
CFAP58
ZNF768
ZNF747
KMT5C
ARL4A
SPAG9
NDUFA5
TRAF3IP1
DRC7
C20orf27
RNF39
PPP1R11
POLR1H
TBC1D32
AHNAK
STK19
LOC110384692
DXO
C4B_2
C4B
C4A
FANCI
INTS8
TLX2
PCGF1
LBX2
TNPO1
MNS1
METRN
FBXL16
GNAT2
AMPD2
TTC26
PJA2
LOC101928764
MRPS21
TPGS1
TCTN3
FBXW7
PRDM4
TMEM67
PAK4
MARCHF8
RHBDD2
CXADR
TIGD4
ARFIP1
RFX3
SLC25A3
MSMO1
RABL2B
CLUAP1
C16orf90
NDUFS3
KBTBD4
FAM180B
ZC3H18
FAM214A
TFIP11
RPGRIP1L
FTO
FAM187A
EFTUD2
CCDC103
GPR137
KCNK4
BAD
ARRDC4
MAP3K14
TUBAL3
NET1
CENPH
DUSP18
UBXN2B
POLI
PCNX4
PGD
ITSN1
CRYZL1
PPP1R42
VTA1
NMBR
KLF16
FOXN2
GTF2IRD2B
GTF2IRD2
YWHAZ
TULP3
EIF2S2
PEF1
ZNF184
THAP10
LRRC49
TBC1D19
TSPAN31
MARCHF9
CDK4
PSMB3
PCGF2
SPG21
MLEC
IFT140
CRAMP1
TRUB2
COQ4
PARS2
NEK11
ASTE1
TMEM234
EIF3I
SPCS1
GLT8D1
TEDC1
CRIP2
CRIP1
HSPBP1
BRSK1
HTR5A
REEP6
PCSK4
CCDC175
ZFYVE28
CFAP99
MUL1
COQ7
TCTN2
FAM86B1
EFCAB10
C11orf97
SIK1B
SIK1
ALS2
WDR90
MCRIP2
SLCO2B1
GLRX5
ODF2
PPP2R1A
BAIAP2
PARD6A
C16orf86
ACD
UVRAG
ZNF775
PIH1D2
NKAPD1
TRAPPC2L
GALNS
LOC390877
ABHD11
C16orf71
ANKS3
E2F3
PODNL1
DCAF15
HMGCR
AXDND1
EHD1
RRP12
PKP4
CCDC148
TMED8
SAMD15
COPS3
SPATA24
PROB1
TEX9
FAM86B2
ERF
MAP1LC3A
RPN1
SDE2
PRR7
DBN1
VPS53
HIGD2B
BBS4
CFAP20
ERICH6
CATSPERG
ZNF24
ERCC1
LMAN2L
CELSR3
PIK3R2
ZNF628
SSC5D
NAT14
FOXO6
MICOS10-NBL1
MICOS10
CCDC74A
LPIN2
RBKS
BABAM2
MFRP
C1QTNF5
RUFY2
CCDC146
KIAA0319
DAAM1
ZIM2
PEG3
NEK2
ID2
CFAP298-TCP10L
CFAP298
BCL2L1
GOLGB1
CDC37
WDR1
TDRP
CEP295NL
RNF5
AGPAT1
AGER
PELI1
DUSP1
TBC1D16
CCDC40
COPB2
RER1
MORN1
MAPRE3
LTV1
WWOX
TENT5C
ZNHIT1
PLOD3
SLC35A2
PIM2
SETD4
CBR1
TSPO
MCAT
PANK2
NQO1
SPACA9
AK8
RASL10A
GAS2L1
BAIAP3
ZNF862
MZF1
ZNF165
OR1F12
CCDC57
MAF1
CYC1
ZEB1
DNAAF2
HSPA12A
ENO4
CRYAA2
CRYAA
LRRC23
CEP135
SREK1
SLC25A27
CYP39A1
SHOC2
BBIP1
CCPG1
C15orf65
NAA20
PBX3
DUSP6
ITGB3BP
EFCAB7
FAM47E-STBD1
FAM47E
PLAA
IFT74
FAM151B
FAXDC2
CNOT8
IQCE
FAM120B
ATP23
KDELR3
KCNJ4
RPS5
THBS3
MTX1
STK36
RNF25
ERI3
PPP1R16A
FOXH1
FAM227B
DTWD1
BSG
SUN3
C7orf57
DNAH6
MYCBP
GJA9
DENND2B
CEP164
CYP46A1
TNRC6A
CYSTM1
LOC388282
KIFC3
FBF1
MTRNR2L2
MSH3
DHFR
TRMT12
TMEM91
B9D2
EPN1
DNAJC10
FAM185A
GTF2F1
NAP1L1
DSTN
BFSP1
FOXN3
DZIP1
EIF2S1
ATP6V1D
INKA2
MARK3
SERTAD3
CEP126
ANGPTL5
GEMIN8
SRSF7
TUBA4B
TUBA4A
STK16
GLB1L
TIMM21
FBXO15
SPATA17
GPATCH2
CCDC188
MX2
RIN1
BRMS1
CALML4
TRIM39-RPP21
TRIM39
E2F8
UBL3
PROS1
ARL13B
SYVN1
DNAJC25-GNG10
DNAJC25
UFSP2
C4orf47
SMARCAD1
DNAL1
C2orf50
PLCD3
ACBD4
CHERP
SSBP4
DNAJC24
DCDC1
TOR3A
TSPAN19
LRRIQ1
ROPN1L
RPL36
MICOS13
HSD11B1L
EMC3
PYGO2
PBXIP1
LOC101928120
LYRM4
FARS2
BBS12
FAM174A
TTC16
PTRH1
CFAP157
FLACC1
TECPR2
CINP
BRD3OS
HSBP1
MSH5
DDAH2
CLIC1
OSBPL2
PLEKHB1
SLC25A46
AJM1
ZNF76
HNF4A
PDCD6
HYDIN
CENPS-CORT
CENPS
PRR3
GNL1
TOGARAM1
KLHL28
LIN54
POLD2
TUBE1
FAM229B
SPATA6
PLIN5
LRG1
GNL2
ZASP
SAP25
TREX1
SHISA5
ZNF664-RFLNA
ZNF664
CCDC92
TCTN1
SF3B5
MBD1
CXXC1
TMEM88
NAA38
CYB5D1
GNG3
BSCL2
GPN1
CCDC121
DNAH12
TPST1
TMEM232
GDE1
CCP110
FBXL14
B4GAT1
G3BP1
FER
POLR3F
DZANK1
KIAA1522
MTRNR2L1
RAB3GAP1
RNF223
TARBP2
MAP3K12
NBR1
CBX8
JUND
IQCN
PPP1R32
ZMAT2
HARS2
HARS1
POLR3H
RUFY1
MTRNR2L8
WDTC1
ARF3
SFI1
EIF4ENIF1
FHAD1
CCDC74B
GLIPR1L1
CAPS2
L1CAM
SPAG1
POLR2K
TCTEX1D4
PLK3
BTBD19
GSTT4
CABIN1
HM13
PPP1R7
PASK
TOB2
HS1BP3
DUX4
ALMS1
ESRRA
CATSPERZ
C4orf48
WIPF2
ENTPD7
PLA2G2A
SH3BGR
LCA5L
ZDHHC1
ARL2BP
USP2
IQUB
MID1IP1
DHX40
RHOBTB2
XPR1
TEX264
PLCH1
MEAF6
C12orf43
GOLGA6L10
MTF1
TAGLN2
IFT52
MPC2
DCAF6
SPATA7
ZNHIT2
TM7SF2
MRPL49
FAU
NDUFAF3
DALRD3
CFDP1
CDC14A
CLIP2
RABL2A