ChIP-Atlas: Target genes

Potential target genes for SMAD9

Query protein: SMAD9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10475367 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SMAD9's Target genes

◢ SMAD9: Average

◣ SRX10475367: Hep G2

◢ SRX10475368: Hep G2

◢ SMAD9: STRING

NPAS4
XKR7
IQSEC3
INSM2
HTR5A
NKX1-1
LIN28A
MTRNR2L1
DUX4
FRG2C
FAM24A
MTRNR2L2
MSH3
DHFR
CPLX2
RAB37
CELSR3
CHGB
FRG2
LOC102724770
DGCR6
RANBP3
KCNH7
GLRA1
SNAP25
L1CAM
MTRNR2L8
BARHL1
DLGAP3
TMEM242
EPHA10
EAPP
MAMDC2
ZC3H18
SST
PPFIA3
C19orf73
MAPK8IP2
RTBDN
MAST1
CADM3
SMIM17
LHFPL5
CLPS
KDM3A
DNAJC6
CDIP1
ICMT
HES3
LEMD3
PTPRS
N6AMT1
SLC7A6OS
PRMT7
SIGLEC10
CCDC92B
CCNL1
ZNF23
ENOSF1
GCFC2
AFAP1
ZPBP2
IKZF3
COL23A1
STAT1
RNF130
MARCHF4
SLC12A5
CTDSPL
HES6
SSTR5
GDAP1L1
NPPB
VGF
CPQ
AATF
USP14
NTSR2
LPIN1
SRRM3
PIK3R3
EVI5
RIPPLY2
CYB5R4
HBQ1
HBA2
HBA1
PTPRN
POLR2J3
TRIM44
H4C12
H4C11
H2BC15
H2AC15
FN3K
PMS2
AIMP2
WTAP
SOD2
UNC80
KLF11
GTF3C3
C2orf66
CHRM4
SLC25A10
MRPL12
STX16
EIF3B
CEP295
FAM118A
RNF103-CHMP3
RMND5A
METTL15
KIF18A
EPM2A
CHGA
GJA10
GRM1
EXOSC6
CNOT3
OGDHL
CERS6
CA4
NSUN5
IPMK
CISD1
LMCD1
DDX1
ANKRD36
CCDC200
STK25
NRSN1
HDAC4
UBE2Q1
CHRNB2
NOMO2
NOMO3
ABCC6
ZFYVE27
SCRT2
RAD50
DPY19L4
NEUROD1
CNPY3
LTB4R2
LTB4R
CIDEB
LDAH
CDK5R2
WDR74
STX5
STMN3
RTEL1
TGM1
RABGGTA
RFC1
SPNS2
SHOX2
HPCA
PPP1R3C
MYT1
SLC39A3
BPIFA3
TCFL5
TIGD1
EIF4E2
SP5
CMTR2
PTMA
ANK1
AKAP10
HECTD1
PMVK
CRYAA2
CRYAA
MFF
TENT4A
SF3A3
ACTL6B
AAR2
PGBD5
KATNA1
SLC3A2
UNG
TCAIM
ALKBH2
SCGN
CNTRL
C5
DTD2
USP30
SVOP
SLC7A7
PPY
MRPL52
LRRC59
FAM177A1
AARS2
RNASEH2C
KAT5
DHX40
THUMPD3
HDAC2
NOC3L
LCLAT1
PLEKHM3
CYP21A2
FMNL3
DIABLO
TM9SF1
IPO4
ZNF286A
TSSK4
AIP
ANKRD36C
GET4
SLC25A21
LUC7L
FAM234A
FANCL
GID8
DIDO1
PSMA1
PDE3B
SIT1
RNF187
NANP
CCDC107
ARHGEF39
NR1D1
TMEM181
SCAMP5
WDR36
USP37
CNOT9
RMND1
DNAJC11
ARMT1
RGS19
OPRL1
LKAAEAR1
RBM28
STAT3
SNRPB
PTP4A2
EFCAB13
EBAG9
SCAF11
INTS12
GSTCD
ENO1
C6orf136
E2F6
SOS1
SAYSD1
MEIG1
DCLRE1C
TMEM186
PMM2
SMC3
SUGCT
MPLKIP
IFNAR1
VPS29
RAD9B
PCDH8
MAP2K2
LRP6
SPOP
LDHA
NUP62
IL4I1
DCP1A
ATF5
RIPK3
ADCY4
SPTSSA
NAA20
CTF1
BCL7C
SCFD1
THNSL1
MAPK8
EIF4A3
DHRS4L2
SPAG4
SCGB1D2
PC
NHLRC1
GRM2
C1QL2
HEATR5A
CTR9
POLE4
PPP2R2C
THUMPD2
ZCCHC7
SUPT3H
HSPE1-MOB4
HSPE1
HSPD1
RPL31
TRIP4
PCLAF
TMEM106B
TMX3
CCDC102B
ODC1
HEXD
MTMR2
RRP15
PEX3
MUC3A
FGFBP3
BHLHE40
ARL6IP1
ADAT2
NID1
DOCK6
SNRPB2
PGRMC2
C7orf25
NOL7
TOB1
TRIM67
GRIA2
TK2
CKLF-CMTM1
CKLF
TAF12
C10orf88
ZNF501
IARS1
MSL2
QTRT1
NUP160
HS6ST1
VRK2
CDC16
TOLLIP
RXRA
NREP
ELOVL3
ABCA3
LRP2BP
ANKRD37
PIKFYVE
NUBP1
GOPC
RSPH3
PDE4C
MRPL44
FAM98B
CABP7
BSPRY
FUS
ZNF84
ZFP1
URGCP
UBE2D4
SRP54
NPIPA3
NPIPA2
L2HGDH
DMAC2L
CUL5
AP5S1
SPHK1
SLC9B1
OSBPL8
HELB
GMCL1
CDK5RAP1
AKAP11
HBS1L
DNAJC10
TRIM8
MAT2A
MAP2K3
LAMTOR5
ZMYND10
RASSF1
TMEM115
RETSAT
PTPRH
PMS1
PARD6A
ORMDL1
NPRL2
CYB561D2
C16orf86
ACD
H4C15
H4C14
H3C15
H3C14
ZKSCAN8
MIPOL1
LMLN2
HAAO
G2E3
FTCDNL1
CLVS1
C14orf119
ACIN1
PAX5
KANSL3
FER1L5
CEP126
C12orf66
ANGPTL5
MED31
C17orf100
UTP11
FHL3
TMED4
DDX56
RSRC1
CBWD5
CBWD3
BPHL
UNK
H3-3B
ZSCAN9
DBI
C2orf76
ALCAM
TOMM34
STK4
MLLT1
LIMS1
TMEM129
TACC3
SLBP
FAAP20
NOL10
RBM45
PDE11A
ZNF3
TRMT6
RUNDC3A
MRPS35
MCM8
COPS6
CCDC83
MRPL39
KAAG1
DCDC2
PAQR4
MEIS3
KREMEN2
APMAP
AGPS
MLN
TASOR
SLC18A3
PBLD
MEIS1
HNRNPH3
HEATR3
GOLGA8A
CHAT
CEMIP
NDUFAF5
ESF1
RAP1GAP
RBL1
RANBP2
ZSWIM7
UFSP1
TTC19
TINF2
THAP7
SUGP2
P2RX6
OXSM
NGLY1
MSH5
MRPL35
MRPL16
IMMT
GRM4
GMPR2
DDAH2
CLIC1
ARMC6
ACHE
OR2T1
NBPF1
MRPL17
ROMO1
NFS1
MOB4
CTNNA2
CRNKL1
CFAP61
CDKN2AIPNL
AP3S2
MTF2
ATR
ACAD9
H2BC14
H2AC14
RAD9A
PPP1CA
STT3B
ZNF219
ZFP90
TMEM253
MRI1
CD274
TTI2
NUDT4
COQ8A
OXA1L
ZNF514
ZNF2
RNF103
POGK
NET1
VSIG2
ESAM
UBAP2L
SOGA3
C1orf43
NME6
NABP1
CCDC57
LACC1
CCDC122
LTV1
ESCO1
PIMREG
MYBPHL
MPHOSPH10
MCEE
HNRNPH1
DTX2
BRMS1L
AIPL1
RBM12
CPNE1
LOC112694756
MORN2
DHX57
TMEM18
SIRT6
RAB3GAP2
LOC100287896
LIPT2
KHDRBS1
ASCC3
ANAPC10
ABCE1
TRDMT1
PLIN5
LRG1
HPS5
GTF2H1
ELOVL1
CDC20
PIGF
CRIPT
RPIA
SYNGAP1
SLC19A1
PSMD7
PHF1
JRKL
ITGB3BP
GMNN
EFCAB7
DHRS2
CUTA
COMMD1
CCT4
CCDC82
C16orf46
WDR43
TTLL4
RABL2B
PAAF1
FBXO33
COA4
XKR9
LACTB2
VTA1
THOC3
SOWAHC
SHQ1
SEPTIN10
SEC24A
PYGB
NMBR
CEBPZ
SCAPER
SULT4A1
SPATA5
SC5D
RPP38
NUDT6
HNF4G
ESYT3
CTDP1
CCDC116
ACBD7
MRPL3
MXD1
RAE1
MTRNR2L3
TAB1
SLC23A3
RETREG2
NDUFAF3
IMPDH2
DALRD3
CNPPD1
ATG7
TMEM230
PCNA
CDS2
TSEN54
LLGL2
CASKIN2
ZSWIM1
SPATA25
NEURL2
CTSA
DCPS
TOP3B
SLC38A1
HNRNPC
EEF1AKMT1
CCDC59
H1-2
WASHC1
TTC26
PSMF1
MVD
CTNNB1
CD320
ZNF202
RPL15
NKIRAS1
HSD17B1
COASY
C2orf73
ARPP19
TUBA1B
VPS16
PCED1A
PSME3
BECN1
RPL5
PIP4P1
PCNX4
OSGEP
EPB41L4B
DCAF10
APEX1
CRBN
ABCB6
SERF1B
SERF1A
RNMT
PGP
PCID2
MMAA
MLST8
MIS18BP1
GATAD2A
FAM210A
E4F1
CUL4A
BRICD5
SRSF6
THUMPD1
SLC7A5
RNF146
PRPSAP1
PET117
MRPL27
MARCHF8
LBP
KAT14
EME1
TSG101
STX18
STARD7
NOP2
HHIPL1
HEATR1
FBXL17
CLN5
CLK1
CCDC85C
ADSS1
MRPL21
IGHMBP2
ZNF425
ZNF398
WDR48
UCKL1
SLC25A36
SEC61G
SDCBP
SCN11A
PPP1R11
POLR1H
ID1
GOLGA5
FBXO4
EEF1AKMT2
DDX19B
CWC25
ATXN2L
ABRAXAS2
AARS1
PTDSS1
MTERF3
MARCHF7
COG7
RRN3
RNPEPL1
PPT1
NPM1
MYBL2
KIZ
KIAA1958
DUSP28
DCUN1D5
CHFR
C9orf147
ANKMY1
ANKEF1
DEFB132
HINFP
TBC1D19
SRP19
PROCR
FANCD2
HID1
CDR2L
WDR41
TOMM5
STIP1
PPME1
NSRP1
NHEJ1
GAS2L3
CPNE4
C2CD3
TTPAL
TRA2B
SLC37A4
PTPRA
PPP4R3B
PLA2G10
NFIX
HSD17B12
EIF4G2
CD302
HHATL
SLC39A1
CRTC2
CREB3L4
TMEM223
TMEM179B
TEX14
RAMAC
RAD51C
PHOSPHO2
DHRS4
CHEK1
CCDC173
AHI1
PIK3IP1
TMEM101
TBC1D15
MOCS2
BMS1
ACAP2
MIA2
COCH
SPAAR
HRCT1
USP47
TNPO1
TEX46
REXO2
KDM1A
HNRNPF
GINS1
DUS1L
DBNDD2
USP40
RPL37A
TANK
TP53I3
TNXB
THAP5
SPAG16
SNRPD1
SF3B6
RIF1
PBRM1
MATN1
GNL3
FAM228B
DNAJB9
CENPA
C4B_2
C4B
AKTIP
ZER1
TTC30B
SMIM26
SLC35F5
NFU1
MLH1
LSM12
G6PC3
EPM2AIP1
DUS2
DPEP2NB
DDX28
CZIB
CCDC34
PRKDC
MCM4
TOB2
TBC1D32
SLC25A28
SF3B5
PSMD12
L3HYPDH
JKAMP
ICE2
CIAO3
CEP192
ASNS
C15orf61
ATP5F1E
NAT10
ZCCHC9
TMEM116
STAU1
SLX4IP
SF3A2
SEH1L
RPS7
RPLP1
PLEKHJ1
MKKS
MAGOHB
LMAN1
KLHL9
HUS1
H4C3
H1-6
FBXO48
EXD1
ERP29
DDX27
COA7
CHP1
C6orf62
APLF
SMPDL3A
SFI1
SERINC3
POLM
PKIG
NCL
MGA
FABP7
EIF4ENIF1
CBWD6
CAT
PHF3
WASHC4
ZFHX2
ZBED8
THTPA
NPIPB6
MBIP
GPR6
FAAH
XRN2
PEDS1-UBE2V1
PEDS1
C14orf93
CFDP1
SYCP2
PPP1R3D
PPM1D
OSGEPL1
NCK1
FAM217B
CBWD2
ANO10
ABHD5
RBM7
C11orf71
ZBED9
TGFBRAP1
SGF29
PRMT2
PLAA
IFT74
FAM149B1
ECD
CSE1L
C2orf49
CDCA7
IMMP1L
ELP4
UBE2E3
THAP9
SLC25A13
SEC31A
RALGAPA1
PRKAR1A
NDUFA12
KRR1
KNOP1
IQCK
IFT88
CHORDC1
ANKRD36B
MRPL19
CPPED1
LTN1
NOMO1
TAMM41
ZBED6CL
PLS1
LRRC61
KANSL1L
JAM3
IDH3B
GOSR1
DBP
CA11
C18orf25
ATP5MC2
ACTR3C
DHDDS
TUBGCP3
WDR89
GPN1
CCDC121
WDR35
TMEM262
PUM2
FRG1
FOXJ2
GCA
PRR3
GNL1
TMA16
SDHAF3
SCAND1
RIOK1
MDP1
CHMP4A
CAGE1
ANAPC1
ACYP2
ZNF451
TRAF6
RAG1
PPAT
PEBP1
PAICS
NAGK
FUT10
CCDC43
PRRT2
PAGR1
MAZ
VPS52
TTC17
TRAK2
TOP1
TBRG4
STRADB
RPS18
PRPF38B
FEM1B
FAN1
FAM162A
CCDC66
CCDC58
B3GALT4
ATXN7L3B
ARHGAP5
ITPRID2
DDX18
TRAPPC6B