ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3301664 | Forelimb
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◣ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Tcstv3
Cldn34d
Plekhb1
Zfp442
Brox
Aida
Eva1b
Ndufs7
Kctd1
Tmem125
Foxp1
Klhdc8b
Ccdc71
Caap1
Pigt
Nek2
Rusc1
Ndufs8
Rarb
Atxn2
Foxp2
Tmem259
Cnn2
Pidd1
Slc25a22
Mrpl16
Asmt
Bmt2
Pitpnc1
Fbxo8
Cep44
Slc35d1
Rbks
Babam2
Ndufs1
Eef1b2
Cfl2
Stard3
Tbc1d17
Akt1s1
Homer3
Hoxb3
Ciao2b
Arf4
Pdcl3
Rdm1
Hoxa6
Hoxa5
Oxnad1
Dph3
Rarg
Cox17
Maats1
Iffo1
Tex14
Zfp937
Knop1
Iqck
Pspn
Alkbh7
Gm10130
Rax
Guf1
Sdha
Ccdc127
Spon2
Rps3a1
Gm4981
Ccne1
Lipe
Tradd
Hsf4
Fbxl8
Eapp
Pdlim7
Capg
Lsm8
Fam32a
Supt16
Zfp770
Yars
S100pbp
Usp37
Cnot9
Wdfy1
Wdr77
Atp5pb
Idh3b
Dnajc19
Kansl2
Pick1
Wdr7
3300002I08Rik
Naa35
Mpv17l2
Mdh1b
Fastkd2
Nkx1-1
Cuedc1
Dock1
Taf12
Nynrin
Dnajc27
Gpi1
Crb2
Rsbn1l
Atg9b
Abcb8
Stk11
Dpp9
Gcn1
Tirap
Cpa1
Mbd2
Cyp46a1
Gpx4
Ppdpf
Tsc22d1
Hspa5
Mrps33
Irf2bpl
Pla2g15
Hdhd3
Unc50
Coa5
Arih2
Fabp5
Zmiz1
Pfn1
Eno3
Anxa5
1810062G17Rik
Ssr1
Gga1
Cdkn2aip
Armc7
Ppp1r11
Olfr806
Abhd6
Wwox
Kpna1
Esr1
Tent5c
Csf2ra
Slc15a1
Oasl1
Il31ra
Vmn2r102
H4c8
Calr
H2ac10
Sspn
Gabarapl2
Adgra2
Fbxw7
Akirin2
Tmem181a
Hivep3
Tomm5
Efnb3
Ints3
Kcnk5
Bcl2a1a
Aqp3
Fubp3
Atp11b
Hoxb13
H4c3
H1f6
Gcgr
Mtf2
Cdx1
Sbno2
Tmem33
Nemf
Cdk15
Mkrn1
Fam227b
Dtwd1
H3c7
Xylb
Bcl2a1b
Notch4
Cyp26a1
Znfx1
Socs3
Rps29
H4c2
Trim29
Hmox2
Ilf2
Tmem191c
Enpp4
Tctn1
Prdx6
BC107364
H3c6
Ssty2
Gm21242
H4c4
H2bc6
Brwd1
Taf13
H3c2
H3f3b
Cidea
Rasip1
Bcl2a1d
Capns1
Slc6a16
Cd37
Srsf7
Slc35g3
Polr2a
Mafa
Tcp11
Izumo1
Tfrc
Cic
Erdr1
H2bc9
Olfr180
Ksr1
Kat7
H4c1
Abl1
H3c11
H2bc22
H2ac22
Ifna13
Klf2
Mycn
Slc43a1
Ier5
Baz1b
H3c3
H2bc3
Cd44
Ect2
Poldip3
H4bc24
H2bc23
H2ac24
H2ac23
Pmepa1
H3c8
Ier2
Rhobtb1
A930033H14Rik
H1f5
Mreg
H4c18
Vgll2
Adam5
P4ha3
Ncmap
Taf4
Ttpal
Dppa2
H3c15
H3c14
H2ac19
H2ac18
H4f16
H2aj
Dchs2
H4c11
Sub1
Cyth4
Dusp9
Rnf19b
Ing1
Jund
Iqcn
Itga5
Adgre5
Fam24b
Phf5a
Aco2
H2ac4
Malt1
Nodal
Gtpbp4
Mettl14
Ifitm7
Bmerb1
Sgf29
Crebzf
Rnf13
Prkdc
Ap3s2
Trib3
H4c9
H2bc11
H2ac11
Nabp1
Nfyb
Srsf3
Fbxo6
H1f2
Gm20594
H3c13
H2bc18
Galnt2
Tm7sf3
H2bc21
H2ac21
H2ac20
H3c1
H1f1
H2bc4
H2ac6
Dlg4
H2ax
Sfi1
C1qbp
Zdhhc18
Abr
Zfp827
Gja4
Ttk
Ccin
Icam1
Evi5
H4c12
H2bc15
H2ac15
Hnrnpab
H4c17
H2bc12
H2ac12
Foxo3
Klf4
Rgs18
H4c6
Gtf2a1
Gstp2
Nudt4
Dedd
Aadacl2fm1
H1f4
Fam53c
Arrdc2
Hspb8
Creld1
Gm3448
Gm3417
Plk3
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Dcaf4
Rsrp1
Slc29a1
Mymx
H3c10
H2bc14
H2bc13
H2ac13
Smc3
Btg2
Cited2
Mphosph9
2810006K23Rik
Fbxo31
Ubb
Sumo1
Asph
Zswim8
Jarid2
Hspa8
Scn8a
Mok
Rrn3
Tcte3
Gm3435
Zbtb37
Rai1
Acp6
Mtg2
Ube2o
Tmigd1
Atp2a2
Ttf1
Tob1
Arid5a
Smarca5
Arhgap19
9030025P20Rik
Bcar1
Ints6
Stap2
Mpnd
Hoxa1
Nanog
Pcx
Tbc1d10b
Mylpf
Rnd3
Junb
Hrob
Taar7a
Agrp
Porcn
S1pr2
Ggact
Sacm1l
Ranbp3l
Kng2
Tpm2
Thrsp
Dcpp1
Jam2
Hexim1
Rab7
Gm867
Chchd10
Phc1
Rpl3
Letmd1
Slc9a1
Calm2
Rfc5
Agbl5
Ankrd39
Zfp532
Trim41
Rnf169
Mis18bp1
Nphs1
Atg14
Itpk1
Ubxn2a
Sde2
Nufip2
Trim7
Stra8
Creb3l3
Fus
Mybpc3
Hrh2
Lrch4
Fbxo24
Utp14b
Hps5
Gtf2h1
Acsl3
Mpp7
Dpysl3
Sgk1
Mbd3
Zfp143
Nop58
Resf1
Dpp4
Kank3
Hsp90aa1
Stk3
Srsf5
Insig1
Sntb2
Rnaset2b
Capn3
Nudt1
Csrnp2
Sumf1
Trpm1
Spata33
Chmp1a
Mbd6
Ddit3
Zfp979
Fut8
Haus1
Atp5a1
Ppp1r10
Mrps18b
Psmb7
Plxdc1
Mib2
Gm648
Dnajb9
Uck1
Kazn
Tro
Rnaset2a
Pbld2
Hnrnph3
Npbwr1
Spred2
Gtf2a1l
4921539E11Rik
Klf6
Tle5
Zfp36l1
Hagh
Fahd1
Dgat2
Arl15
Sirt4
Ddit4
Calm1
Eif2s3y
H4c14
Rbm14
Gm21992
Msh6
Gtf2b
Gpx1
Cltc
Mobp
Hsp90ab1
Aven
Ctsl
Crlf2
Nsd1
Cbr3
D230025D16Rik
Misp3
H2-DMa
Brd2
Adck5
Ankrd28
Ankrd44
Raf1
Atp1a1
Cbx4
Pyroxd1
Olfr646
Ndufa6
Gpcpd1
Pnp
Tmem116
Erp29
Aplp2
Vars
D17H6S56E-5
Gadd45a
Coro1b
H1f3
Serpinf2
Rpgrip1
Actb
Rnf103
Jpt1
Ccn4
Tas2r134
Eif4g2
BC005537
Clu
Trim40
Trmt1
Men1
Prdm14
Il3ra
Mat2a
Lman1
Id3
Tubb4b
Sbk2
Kmt5b
Rab8a
Chd9
Gja1
Ermard
Ubr4
Gipc1
Prdx1
Errfi1
Dhx32
Nme1
Rpl11
Exosc5
Bckdha
Srsf2
Mfsd11
Spg20
Sema4b
Sf3b1
Cog6
Mllt6
Cyfip2
Dusp1
Dag1
Eif4a1
Brsk1
Cdh12
Nup50
Ghdc
Mknk2
Cenpm
Tmem135
Pcna
P4ha1
Clec11a
Mcl1
Ctnna3
H2-Bl
Arl4d
Wsb1
Rps12
Dhx9
Lgals9
Slc12a7
Snx6
Arrdc3
Ltn1
Ubc
Tefm
Spc25
G6pc2
Dhx8
Tnfrsf19
Proca1
Actn4
Ppp1r15b
Btg1
Wsb2
Gapdh
Extl1
Amd2
Amd1
Tmem107
Hnrnpa2b1
Hbegf
Cbx3
Gtf2f1
Muc1
Wiz
Mrpl37
Cyb5rl
Amacr
Zfp598
Ago2
Selenbp1
Ehd4
Arl6ip1
Vstm4
Trp53inp1
Ttc25
Znhit1
Sec22c
Plod3
Sertad1
Agpat2
Omp
Phf11d
H2bc1
H2ac1
Nr6a1
Slc38a2
Ftl1
Vegfa
Ifrd1
Zfp980
Sephs2
Kctd5
Slc38a5
Mill1
Gcm2
Clcn4
Ttc39c
Spg11
Zfp710
Tuba4a
A630095N17Rik
Kcnn2
Dmxl1
Taar6
Faim
Abcb7
Ppp2r5e
Marchf3
Ddx5
Cep95
Atg4d
Slbp
Itpr1
Fgl2
Rita1
Ddx54
Gtf3c6
Dok4
Prmt8
Styxl1
Mdh2
Cfap126
Luzp1
Mrpl44
Hjurp
A730008H23Rik
Zfand5
Cacng6
Zfp438
Cpt1a
Nsrp1
Uspl1
Fn1
Zfp119a
Taok3
Gfod1
Tnrc6c
Acsl4
Rbmy
Gm21708
Gm21677
Sqstm1
Bcl11b
Dgat1
Rhob
Nfam1
Ppp3ca
Pabpc1
Ppp1r3c
Gabrb3
Txlng
Tmem205
Sod1
Ccdc159
Fos
Fmc1
Skp1
Eif1
U2surp
Stpg4
Nfe2
Mdm4
Elf1
Acly
Megf8
Rwdd2b
Tob2
Pbk
Klf7
Rcbtb1
Sema4f
Vcl
Tlcd1
Peli1
Ifna6
St3gal3
Rreb1
Tpst1
Slc25a39
Tspan9
BC031181
Katna1
Eprs
Dennd6a
Gucy1a2
Cep43
Vmn2r55
Slc25a3
Dpysl2
Dhcr24
Btrc
4921517D22Rik
Sepsecs
Ankrd11
Ep400
Msmo1
Spata16
Etv3l
Cela1
Fyco1
Fam131c
Dnaja1
Ptpmt1
Lgi4
Fxyd7
Fxyd1
Rxrg
Eef1a1
Cnga1
Chchd1
Xrcc1
Pitrm1
Pinlyp
Eif4e1b
Grap
Hnrnph1
R3hdm2
Gfpt2
Dcaf5
Mafb
Atp6v0c
Mfsd14a
Ccnyl1
Slc9a3r1
Inmt
Gm20939
Arhgap27
Tmem64
Maml1
Tmem60
Phtf2
Rps3
H2ap
H2al3
Epha2
Creb1
H2-M5
Vgll4
Sgpl1
Havcr2
Glul
Ass1
Ino80c
Phactr3
Klk8
Slx1b
Bola2
Rps9
Pnpla8
Mnat1
Rps20
P4hb
Jun
Trmt2a
Ranbp1
Mrpl39
Ckb
Plk2
Rusc2
Clic4
Ncl
Knl1
Gm20806
Pdia3
Mbtps1
Catsper2
Adamts19
Ttll3
Snrpe
Mterf1b
Gc
Herc2
Ccn3
Map4k4
Nsa2
Gtf2a2
Gfm2
Denr
Traf7
Snx18
Smndc1
Sap18b
Sap18
Rex2
Gm10710
Copz1
Cebpa
Znrf1
AU018091
Rpl23
Ctnnb1
Ppp1r2
Gm36210
Orai1
Mterf1a
Chn2
Sirt3
Sap30
Psmd13
Trim58
Fam174c
Cirbp
Uqcrc1
Dcaf10
Slfn4
Myo10
Sirt1
Gnai3
Ubap1
Mpc1
Ttc41
Tra2b
Ptpn6
Hsp90b1
Grcc10
Fah
Impdh2
Ankle2
Adpgk
Trpm3
Depdc1a
Hes7
Shoc2
Bbip1
Ccdc113
Rab13
Ush1g
Otop2
Ipmk
Cisd1
Mad2l1bp
Kat6b
Rpl8
Pbx2
Gpsm3
Commd5
Idi1
Gria3
Sec22b
Baiap2
Acp5
Siah2
Rpl26
Dock6
Cpsf1
Defb48
Cpm
Rlbp1
Gm13290
Gm13289
Gm13285
Fasn
Fanci
Fam25c
Ankar
Tcta
Rhoa
Cdkn1a
Tvp23b
Rpl36al
Mgat2
Hhex
Frmd6
Prr5
Tti2
Spry2
Ap4e1
Tor1b
Otub2
Mertk
Max
Tmem235
Odc1
Exd1
Cln8
Chp1
Vamp1
Dnajb6
Ppp1r15a
Plekha4
Nudcd2
Hmmr
Opa1
Insyn1
Ccdc102a
Adgrg5
Gca
Fbxo46
Bhmg1
Limch1
Mrpl21
Il12rb2
Ighmbp2
Hs3st3b1
Atp5e
Trp53inp2
Tmem79
Smg5
Pcmtd1
Eif4e
Cat
Npy5r
Arvcf
Trim17
H3f4
Nkg7
Lim2
Urgcp
Musk
Hsd11b1
Atp1a4
Tsc22d2
Slc25a51
Ndel1
Ammecr1l
Slc25a30
Sesn2
Slc44a3
Erf
Rpl17
Hmga1b
Hmga1
Napepld
Khdrbs1
Susd6
Map1lc3b
Gls
Pnma2
H2-Q8
H2-Q6
Myo1d
Plec
Klf10