ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX208062 | ES cells
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◣ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Eapp
Tex14
H3c6
H3c7
H2bc9
H3c3
H3c2
H2bc12
H2ac12
H4c11
H3c10
H4c3
H3c11
H3c4
H3f3b
H2bc4
H2ac6
H2ac4
H4c18
H3c8
H2bc22
H2ac22
Polr2a
Gm3448
Gm3417
Gm3435
H4c12
H4c9
H4c1
H3c1
H4c4
H3c13
H2bc18
Rdm1
H2bc1
H2ac1
H2bc14
9030025P20Rik
H2bc11
H2ac11
H2ac10
Sspn
H2bc8
H2ac8
H2bc21
H2ac21
H2ac20
H4c17
H4c8
Tcte3
Ermard
H1f4
H2bc6
H2bc13
H2ac13
H1f3
Poldip3
H4c6
H1f2
H2ax
Sfi1
Gtf2a1
H4f16
Taf4
Zbtb37
Ubb
H2bc7
H2ac7
H3c15
H3c14
H4bc24
H2bc23
H2ac24
H2ac23
H2ac19
H2ac18
Grcc10
H2bc3
Mpp7
H2bc15
H2ac15
H4c2
Gtf3c6
Tob1
Errfi1
H1f5
Ing1
Atp1b2
Srsf2
Mfsd11
Ints6
Rps12
Rsrp1
Fam53c
Jpt1
Calr
Eif4a1
Hnrnpab
Slc9a1
Mphosph9
2810006K23Rik
Gtf2f1
Npm1
Clcn4
Smc3
Arrdc2
Csrnp2
Pnp
H4c14
Eif4g2
Tex19.1
Klf6
BC005537
Cdk12
Rcl1
Nabp1
Rpl27
Ifrd1
Rack1
Ftl1
Rpl15
Nkiras1
Gfpt2
Sgf29
Smarca5
Rpl3
Ccdc110
Ccn2
Urgcp
Dhx9
Nufip2
Hexim1
Hspa5
Ier2
Pik3r3
Insig1
Ddx5
Cep95
Ier5l
Slc25a4
Sf3b1
Pcna
Wsb1
Hsp90ab1
Trpm3
Eif4a2
Tfrc
Sde2
Srsf3
Gadd45a
Matr3
Smurf2
Mbtps1
Dhx8
Sqstm1
Tti2
Ccdc12
Mcl1
Taf4b
Lsm14a
Dnajb9
Arl4d
Rpl13
Rpl6
Rpl41
Rpl23
Sub1
Afg3l1
Zfp119b
Wiz
Mat2a
Spg11
Naca
Kansl2
Gls
Nasp
Caprin2
Shoc2
Bbip1
Utp14b
Acsl3
Hnrnph1
Snrpg
Pafah1b1
Tmpo
Btg2
Nme1
Cdc5l
Hspa8
Pkm
Mrpl39
Ddit4
Nop58
Fut8
Taf13
Ptpa
Crat
Cbx8
Peli1
Kpna2
Hsp90aa1
Marchf3
Pabpc1
Txn1
H2aw
Eef1e1
Rps24
Med6
Zfp119a
Snrpb
Rpl9
Lias
Srsf1
Dynll1
Lman1
Pdhx
Apip
Ppia
Unk
Rpl26
Uhrf1bp1l
Znfx1
Mknk2
Tsc22d1
Arc
Tmem270
Pole4
Pbk
Fyco1
Rps2
Gtf2b
Ksr1
Hmgb2
Arl6ip1
Zfp959
Kat6a
Mre11a
Ankrd49
Mest
Fus
Hjurp
A730008H23Rik
Sod1
Rnf149
Zfp943
Zfp942
Cirbp
Ap1g1
Nfat5
Rps27a
Clhc1
Zwilch
Rpl4
Rtcb
Por
Tcea1
Ctnnb1
H2az1
Thoc1
Maml1
Ncl
Drg1
Rtn4
Hpf1
Pigg
Rps20
1810009A15Rik
Atp1a1
Amd2
Amd1
Btg1
Styxl1
Mdh2
Selenot
Upf3a
Ppil4
Rps15a
Impdh2
Srsf5
Mterf1b
B4galt3
Psme4
Srrm2
Ppp1r15a
Plekha4
2610042L04Rik
Nxf1
Tubb4b
Dusp1
Slc36a1
Tial1
H2bu2
Prdx1
Snx18
Rps26
Zfp36l1
Hnrnpa2b1
Cbx3
Ier5
Zfand5
Rps6
Rpl7a
Med22
Mak16
Elp5
Ctdnep1
Rita1
G3bp1
Dars
Ddx54
Fntb
Kcnh1
Gapdh
Zfp981
Sephs2
Vcpkmt
Sertad2
Cop1
Cited2
Ulk2
Rcn2
Klf2
Rps8
Clu
Dgat1
Gm3667
Ahctf1
Gpx1
Arrdc3
Dhx30
Calm1
Rhob
Traf7
Timm22
Tuba1c
Ppp1r8
Pts
Fastk
Aqr
Tbrg1
Canx
Acly
Smg5
Appl1
Ube2s
Ankfy1
Ccnt1
Slc2a1
Cdh1
H1f1
Snx5
Mgme1
Cep295
Scfd1
Ubac2
Cltc
Stmn1
Ppcdc
Rpl35a
Iqcg
Tma16
Calm2
Srp54c
Agpat2
Oxnad1
Dph3
Pex3
Adat2
Rbbp7
Ptcd3
Polr1a
Tnrc6c
Ncoa4
Pradc1
Cct7
Cep43
Scnn1g
Rpl19
Yeats4
Zfp982
Srp19
Hspa9
Setd5
Crlf3
Nudt1
Mrm2
Rnf19b
Klf7
Slc25a3
Rps3a1
Ptma
Mtpap
Mtf2
Ppp1r10
Mrps18b
Mylip
Adpgk
Zfp963
Hif1an
Spata20
Psma4
AY074887
Trmt10a
Mttp
Lyzl6
Mrpl35
Rrp15
Srp68
Fxn
Glul
Tra2b
Ccnq
Atf2
Srcap
Rccd1
Rnaset2b
Rnaset2a
Taf1d
4931406C07Rik
Eef2
Rab33b
Rapgef6
Atp6v0a1
Tdp2
Acot13
Ddb1
Tsg101
Prpsap2
Dus4l
Cog5
Rnf7
Crls1
Jade1
Rpl12
Lrsam1
Psmd5
Map3k3
Ddx52
Pdia3
Catsper2
Ubr3
Bclaf1
Sphk2
Rpl18
Cabyr
Actb
Rps7
Add3
Deaf1
Ddrgk1
Arl15
Trp53inp1
Smim7
Rnps1
Adss
Ppan
Ptrhd1
Cenpo
Cdkn2aip
Tcta
Rhoa
Opa1
Tm2d1
Kdm4d
Cwc15
Rpl8
Med21
Zfp207
Nprl3
Kansl1
Psme3
Rps3
Rplp0
Wdr82
Usp53
Hnrnpc
Guk1
Snrpe
Rps19
Skp1
Rps9
Ints12
Gstcd
Ccdc86
Strap
Tcf15
Ccnyl1
Eif3a
Mapk1
Ythdc1
Ppm1b
Ephb3
Dynlt1b
Haus1
Atp5a1
Rbm39
Rpl17
Hectd4
Ptpn2
Ahcyl1
Kat8
Eif5a
Uspl1
Fos
Cpsf1
Vps52
Rps18
Polg2
AU041133
Zfp143
Gk5
Carmil1
Kctd5
Nubp1
Myh10
Paxip1
Zswim3
Acot8
Taok1
Ptpru
Cfl1
Sac3d1
Sptbn1
Spc25
Nup62
Il4i1b
Atf5
Rab8a
Slc38a2
Napepld
Dnajb1
Atf6
Serbp1
Ergic2
Haus4
Rnf34
Zscan21
Rptor
Mterf1a
Acer2
Blmh
Timm17a
Rpl31
Pmf1
Zcchc17
Snrnp40
Eef1g
Trappc1
Cntrob
Dnaja1
Edrf1
Slc18a1
Atp6v1b2
Fnbp1
Ttc17
Zfp654
Cggbp1
Etf1
Smc5
Zfp97
Slc25a39
Rps27rt
Rps27
Rab13
Gadd45b
Dbnl
Mdh1b
Fastkd2
Sp2
Ska3
Mrpl57
Gtf2a2
Odc1
Kntc1
Pcif1
Chmp2a
Mmaa
5730455P16Rik
Cdc42se2
Mrpl17
Zfp433
Gm32687
Cct4
Pigq
Copb2
N6amt1
Tagap1
Tnrc6b
Smndc1
Clcn3
Bdh2
Slbp
Pfdn2
Nit1
Fbxw2
Ubap2l
4933434E20Rik
Atxn2l
Mrps28
Actg1
Set
Kat7
Rps4x
Prr14l
Coq3
Uqcrb
Gm10767
Pir
Eef1a1
Hmga1b
Hmga1
Amdhd2
Pgrmc1
Chmp5
Bag1
Rbm25
Rpl18a
Rad23a
Csde1
Prdm10
Rab7
Kifc5b
Ipo7
Ogfod1
Nudt21
Gosr2
Slc4a11
Aplp2
Sertad1
Snrnp70
Bbs10
Zfp330
Rif1
Pelp1
Ckap2
Irgm1
Ints10
Txnip
Gpx4
Ddx3x
Etfrf1
Casc1
Zfp866
Cks2
Id1
Mlh1
Epm2aip1
Cct5
Atpsckmt
Ndufb1
Cpsf2
Col1a1
Arl2bp
Cops3
Zc3h13
Ubl7
Kctd20
Rbm34
Tmem168
Slirp
Nrp
Alkbh1
Rchy1
Ccna2
Aldh3a2
Rnd3
Ankrd11
Fasn
Smyd4
Rpa1
Dip2b
Paip2
Tasor
Mtif2
Kdm3a
Ccng1
Arhgef7
Micos10
Zfp868
Pcnt
Rpl39
Sdad1
Zfp882
Cpm
Birc6
Polr3gl
Rbis
Rnaseh1
Mettl14
Ppp1r3c
Pcnp
Megf9
Uqcrq
Rc3h2
Fmr1
Uchl1
Fah
Dcaf12
Vps4a
Atad2
Srsf11
Rpl36
Kbtbd8
Dcp1b
Nqo1
Kmt5b
Dmxl1
Ankrd39
Esyt2
Nfyb
Gbe1
Luc7l
Rps23
Srek1
Xpc
Lsm3
Map3k7
Ppih
Ube2a
Tm2d3
Tbpl1
Nmt1
Zfp512
Arf3
Rbm14
Gm21992
Sirt1
Atp5e
Glce
Atp5b
Spg7
Atp1b1
Eloc
Mrpl30
Mitd1
Polr3d
Selenof
Hs2st1
Ccni
2010109A12Rik
Exosc6
Cdk1
Fancd2
Emc3
Hspa1l
Hspa1a
Txnrd1
Trir
Ssr3
Cdkn1a
Chrac1
Ints13
Fgfr1op2
Rad1
Brix1
Gtf2h3
Eif2b1
Tmco1
Ercc6l2
Ccnb1
Tars2
Ccm2
Fam161b
Coq6
Hddc2
Jun
Hnrnpu
Serinc3
Dnajc19
Ptpn12
Ywhae
Eci1
Tgfbrap1
AI597479
Iba57
Oxa1l
Akip1
Nelfcd
Kit
Sae1
Raf1
Plk2
Mrpl1
Actn4
Tgoln2
Tgoln1
Srp54a
Tmem126a
Slc7a5
Clk1
Srp54b
Sf1
Wnk1
Atp9b
Sugct
Mplkip
Psmd2
Tbcd
Ube2l3
Tmx3
Micalcl
Angel2
Zfp955b
Rbm3
Smn1
Zdhhc7
Hspbap1
Gata3
Chic2
BC031181
Zfp638
B230219D22Rik
Nat10
2610507B11Rik
Snu13
Fscn1
Cfap97
Ngdn
Utp23
Dhx37
Slc25a45
Usp37
Cnot9
Atp5g3
Fam43a
Rab5b
Tra2a
Cyc1
Pnn
Zfp655
Rrm2b
Wac
Stxbp4
Cox11
Dele1
Aars2
Mapk1ip1l
Gpbp1
Ipo11
Pole2
Rcc1
Tmem131
Tbx3
Rad9b
Adam17
Commd8
1600014C10Rik
Septin11
Atf7ip2
Nom1
Zfp160
Arl6
Eif1
Morc3
Mfsd8
Laptm4a
Rpl30
Suz12
Fkbp3
Cdk11b
Mrps31
Tuba1a
Fbxo5
Denr
Nsrp1
Sugp1
Mau2
Bcl2l13
Nsun4
Hdhd5
Tmx1
Nras
Gtf2h2
Wdhd1
Socs4
Prpf4
Cdc26
Nudt2
Kif24
Pfdn1
Dnajb4
Rbbp6
Trip4
Mrpl44
Fubp1
Topbp1
Asxl2
Pum3
Eif4b
Rsbn1
Rraga
Chd2
Mcoln1
Utp18
Mbtd1
R3hcc1
Ccdc174
Pcx
Exd1
Chp1
Kbtbd7
Hars2
Hars
Ttf1
Nyx
Mad2l1
Cse1l
Timm44
Nufip1
Gpalpp1
Vegfa
Fth1
Mtg1
Hint1
Mtr
Efnb1
Trappc8
Diablo
Slc1a5
Ppie
Xpo1
Mdm2
Srpk1
Slc9a8
Zfhx3
Xrcc5
Klhl9
Bard1
Coa7
Armh3
Cep55
Itpr1
Manf
Tubd1
Rps6kb1
Rplp1
Rpl21
Rft1
Hibadh
Cul1
Ddx17
Cenpt
Rnpc3
Parl
Trak2
Secisbp2
Mcm9
Tob2
Amotl2
Rbm12
Cpne1
Anp32e
Srrt
Txndc9
Eif5b
Cdt1
Caap1
Becn1
Rpl36al
Mgat2
Aspscr1
Paip2b
Puf60
Pank1
Nop2
Rnft1
Rps10
Rbfox2
Lsm6
Mthfs
Ndufc2
Zbtb44
Snx11
Hint3
Rab3gap1
Wbp11
BC049715
Zc3h18
Mphosph6
Smarcc1
2310009B15Rik
Nek11
Aste1
Pibf1
Dis3
Lin9
Tmem237
4930447C04Rik
Trmt2a
Ranbp1
Med23
Ggcx
Bcl2l1
Sdc4
Ywhaq
Snrpa
BC024978
Psma3
Aaas
Ppp1r12a