ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520474 | F9
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◣ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Trim29
Gnb5
H4c8
Adam5
Tas2r134
Ilf2
Trib3
Gtf2a1l
Sumf1
Stk3
Mettl14
Cbx4
AU018091
Asb2
Etv3l
Dcpp1
Cnga1
Fxyd1
Fanci
Polr3e
Gpr141
Oxgr1
Musk
Gcm2
Slc38a5
Sacm1l
Agbl5
Fbxo31
Dytn
Slc2a9
Mill1
Kcnn2
Cxcl5
Gnl2
Olfr222
Lilr4b
Gria3
Tpcn2
Ces2a
Vmn1r205
Ankrd66
Prss51
Zp1
Pcx
Eif2s3y
Slc44a3
Snorc
Ifna6
Rffl
Papln
Il1b
Scn8a
Fmc1
Islr
Vgll4
Rps29
Rnase4
Ang
Olfr813
Ly6l
Lamp5
Alox12b
Cngb3
Trim34a
Knl1
Defb8
Foxp2
Cyp2f2
Alx4
Depdc1a
Mrgpra2a
Cxxc4
Avpr1a
H2-M5
Cdh26
Katna1
Pak3
Shox2
Inmt
Ltbp1
Scgb2b3
B3gat1
Klri1
Trarg1
Rab27b
Ctnna3
Ppp6r3
Cyp2d9
Chic1
Cmas
Nkx2-5
Tgtp2
Tgtp1
Mboat1
Ces1f
Irak3
Proca1
Fam3c
Igfbp2
Stbd1
Olfm5
Zic4
Scgb2b1
Herc6
Dcpp3
Fabp6
Nt5c1b
Shank1
Triml2
Ccdc85b
Sgk3
Ercc1
Slitrk3
Acp6
Lmo3
R3hdm2
Selenbp1
Pde4a
Iigp1
4930503B20Rik
Pomgnt2
Pros1
Gfpt2
Rarb
Fubp3
Arhgef19
Lrrtm4
Ucn3
Epha5
Serpinb12
Kncn
Spink13
Scaper
Coro6
Chpf2
Gm45337
Mynn
Fuca2
Gas1
Inip
9930111J21Rik2
9930111J21Rik1
Fam71f1
Rftn2
Exosc2
Gpm6a
Tdpoz3
Fuom
Oxnad1
Dph3
Olfr902
Ott
Gm15107
Gm15085
Slx4ip
Crem
Ndp
Pcdhb9
Lyzl1
Ceacam11
Aass
Cped1
Krtap6-1
Dusp5
Olfr1200
Rbks
Babam2
Ttk
Porcn
Olfr125
Oasl1
Sema3g
Kdm5a
Tc2n
Zswim8
Dcc
Cox7a1
H2aj
Emp2
Echdc2
Mgrn1
Spp1
Scgb2b2
Pate4
Alox5ap
Akap17b
Nxf2
Dsg4
Smarca1
Lipo4
Zfp385a
Clcn4
Lsm6
H2-T9
H2-T22
Gm6034
Tm7sf3
Enpp4
Ikzf4
Nanos2
Rpl37rt
Stau2
Samd14
Mymx
Dgat2
Rbpj
Ostn
Enpep
Pabpc5
Abcc3
Casp14
H2-Eb2
Acsm2
Ccdc141
Sult2a7
Lipi
Kcnip1
Gpr174
Celf4
Mlxipl
Usp17la
Usp17lb
Timd2
Tfrc
Pnp
Uck1
En2
Pcdhga8
Fam240a
Fam25c
Hivep3
Gtpbp4
Ndufs7
Rara
Adgra2
Cdk15
Dpp9
Gdpd2
Pde6b
Nudt11
Cntnap5b
Krt19
Plekhb1
Brk1
Luzp1
Cxcr3
2200002J24Rik
Muc1
Cyp3a16
Meikin
Mtf2
Hsd3b3
Cdx1
Klhl34
Tspan9
Vmn2r23
Pyroxd1
Il33
Dusp9
Lipe
Rhobtb1
Jsrp1
Olfr971
Ms4a20
Alkbh7
Tomm5
Fam50b
Olfr1286
Bmt2
Slc43a1
BC048679
Phf5a
Aco2
Cfl2
Card6
Tradd
Fbxl8
Dedd
Mylpf
H2-Q9
H2-Q7
Ghdc
Mib2
Actrt1
Slamf7
Slco1a5
Tcp11
Agtpbp1
Slc6a16
Pbld2
Dag1
Cog6
4931406B18Rik
Dok4
Rpe
Eapp
Tex14
H4c3
Sspn
Mkrn1
Slc15a1
Tmem191c
H3c6
H3f3b
Rdm1
Polr2a
H4c4
H3c7
H2bc9
H3c11
Ttpal
Hspa5
H4c18
H4c11
H3c15
H3c14
Ing1
H3c2
H4f16
H4c9
Gm20594
H3c3
H2ac19
H2ac18
H2bc21
H2ac21
H2ac20
H3c13
H2bc18
H2bc4
H2ac6
H2ax
Zdhhc18
H4c12
Ifitm7
Bmerb1
Jund
H2bc12
H2ac12
Icam1
H1f2
Ppdpf
Fam53c
Arrdc2
H1f4
Gm3448
Gm3417
Nabp1
Hnrnpab
Rsrp1
H3c10
H4c17
Btg2
Ubb
Mphosph9
2810006K23Rik
Hspa8
Taf4
H4c1
Calr
Zbtb37
Gm3435
Atp2a2
Tob1
9030025P20Rik
Ints6
Taf13
Arf4
H3c4
Gtf2a1
Sdha
Ccdc127
Smarca5
Hrob
Nek2
Guf1
Spata33
Chmp1a
H4c2
Poldip3
Sfi1
Calm2
Hexim1
Slc9a1
Rpl3
Letmd1
Arl15
Sde2
Nufip2
Junb
Fus
Gpcpd1
Utp14b
Acsl3
Hsp90aa1
Mbd3
Srsf5
Sntb2
Dppa2
Insig1
H3c1
Haus1
Atp5a1
Csrnp2
Ppp1r10
Mrps18b
Dnajb9
Phc1
Ddit4
H2bc22
H2ac22
Klf6
H2bc6
Calm1
Rbm14
Gm21992
Gpx1
Hagh
Fahd1
Sgk1
Sub1
H4c14
Cltc
Gtf2b
Ctsl
Ier2
Znfx1
Raf1
Aplp2
Atp1a1
Ndufa6
Ankrd28
Jpt1
Mpp7
Gadd45a
Cited2
H2ac4
Prdx1
Actb
Rnaset2b
Eif4g2
Rnf19b
Tsc22d1
Clu
Mat2a
Tubb4b
Tcte3
Ermard
BC005537
Dhx32
Rab8a
Rnaset2a
Lman1
Kmt5b
H2bc11
H2ac11
Errfi1
Srsf2
Mfsd11
Cox17
Sf3b1
Eif4a1
Mknk2
Pcna
Arl4d
Smc3
H3c8
P4ha1
H1f3
Mcl1
Wsb1
H2-Bl
Hsp90ab1
Ubc
Dhx8
Atxn2
Zfp36l1
Amd2
Amd1
Ndufs8
Btg1
Hnrnpa2b1
Cbx3
Gtf2f1
Arl6ip1
H2bc13
H2ac13
Wsb2
Srsf3
Amacr
Mrpl37
Cyb5rl
Trp53inp1
Ftl1
H2bc1
H2ac1
H2ac10
Kctd5
Slc38a2
Vegfa
Sephs2
Ifrd1
Ier5
H2bc8
H2ac8
Tuba4a
H4bc24
H2bc23
H2ac24
H2ac23
Slbp
H2bc7
H2ac7
Spg11
Ddx5
Cep95
Marchf3
Afg3l1
Gtf2a2
Dmxl1
Hjurp
A730008H23Rik
Gtf3c6
Zfand5
Rita1
Fam32a
Uspl1
Styxl1
Mdh2
Tnrc6c
Ptpmt1
Tob2
Prdm14
Rhob
Pabpc1
Sqstm1
Abcb7
Fos
Ppp1r3c
Skp1
Zfp710
Acly
Zfp438
Klf7
Dusp1
Cpt1a
Vcl
U2surp
Peli1
Msh6
Rnd3
Rcbtb1
Dennd6a
Vamp1
Slc25a3
H4c6
Pigt
Cep43
Rps12
Slc25a39
Gapdh
Ep400
Dhcr24
Fyco1
Msmo1
Dnaja1
Eef1a1
Wdr77
Hnrnph1
Atp5pb
Mad2l1bp
H2bc15
H2ac15
Grcc10
Ccnyl1
Mafb
Slc9a3r1
Prmt8
Maml1
Epha2
Abr
P4hb
Rps3
Glul
Rps20
Socs3
Jun
Trmt2a
Ranbp1
Sap18b
Sap18
Plk2
Mterf1b
Ncl
Clic4
Snrpe
Mbtps1
Traf7
Dhx9
Snx18
Denr
Mrpl39
Herc2
Pdia3
Catsper2
Pdcl3
Cebpa
Cirbp
Ppp1r2
Ctnnb1
H2bc14
Sirt3
Psmd13
Mterf1a
Sirt1
Ttc41
Hsp90b1
Ubap1
Impdh2
Tra2b
Cdkn2aip
Ankrd11
Idi1
Tti2
Ipmk
St3gal3
Rnf103
Mpc1
Trpm3
Itpr1
Odc1
Frmd6
Fasn
Cpsf1
Tcta
Rhoa
Ppp1r15a
Plekha4
Chd9
Mertk
Susd6
Hhex
Urgcp
Eif4e
Pcmtd1
Usp37
Cnot9
Gls
Smg5
Atp5e
Tsc22d2
Caap1
Ndel1
Map1lc3b
Chchd1
Slc25a30
Exd1
Chp1
Napepld
Rps6
Hnrnpu
Sesn2
Paxip1
H2bc3
Hmga1b
Hmga1
Uqcrc1
Klf10
Por
Erf
Slc25a51
Pdhx
Apip
Klhl21
Txnip
Fdx1
Mrpl1
Mylip
H2-Q8
H2-Q6
Chordc1
Mrps28
Chchd2
Hspa1l
Hspa1a
Acer2
Nfkbia
Gpx4
Dnajb1
Dnajb4
Med23
Iqgap3
Knop1
Iqck
Ncoa3
Kdm4c
Ciao2b
Slc35d1
Rpl23
Man1a
Kntc1
Arhgap19
Acy3
Mllt6
Fth1
Dgat1
Atp1b2
Sertad2
Serinc3
Slc31a1
Fkbp15
Rps2
Eif4a2
Txn1
Tagap1
Cd81
Rpl7a
Med22
Ccdc110
Rcl1
D230025D16Rik
Amdhd2
Whamm
Taco1
Ern1
Zfp119b
Srp19
Eif3a
Actn4
Nudt4
Taf1d
4931406C07Rik
Rpl13
Gadd45g
Smyd4
Rpa1
Unk
Zswim3
Acot8
Rnf125
Adpgk
Irs2
Hspa1b
Degs1
Cebpd
Slx1b
Rplp0
Rusc2
Sertad1
Rps27rt
Rps27
Rab13
Atp5g3
Rps24
H3f3a
Ddx3x
Ccnt1
Mapk14
Nrd1
Ppia
Ulk2
Ncoa4
Glce
Gclc
Mapkapk2
Pcif1
Cpm
Mak16
Acp5
Vmn2r4
Rpl9
Nfe2l2
Lias
Rps9
Homer3
Rasl10b
Sgf29
Rbbp6
Cyren
Baiap2
Acad12
Wbp4
Elf1
Actg1
Rcn2
Ptp4a1
Arrdc3
Stard6
Scnn1g
4930503L19Rik
Map2k4
Npm1
Ints14
Ankrd39
Nr6a1
Sbno2
Nsrp1
Cryzl2
Rbm39
Pigl
Ncor1
Mapk1
Klf2
Pik3r3
Palb2
Dctn5
Zfp119a
Ggcx
Vps52
Rps18
Pdk1
Ndufaf3
Gadd45b
Abcb8
Tuba1c
Slc5a3
Rbm4b
Mrps6
Eef2
Slc20a1
Hmox2
Midn
Shld2
Plec
Map2k2
Glud1
Adk
Zfp959
Rpl8
Rtn3
Jak1
Gabbr1
Zfp963
Tmem39a
Smurf2
Slc16a10
Ost4
Trappc3
Rps3a1
Rpl17
Sod1
Mdk
Zfp770
Wdr82
Tnnt1
Ddx24
Csrnp1
Plk3
Rab33b
Nfe2l1
Ddost
Naca
Eif1
Dip2b
Taf4b
Nfkbiz
Unc5b
Slc2a1
Epc1
Dnajc1
Gpat4
Nme1
Ctdp1
Ccar1
Tango2
Med21
Ksr1
Preb
Mtg1
Etfrf1
Cfap20dc
Casc1
Ssbp1
Rnf38
Id3
Mob1b
Hint1
Bsg
Ttc7
Ppib
B2m
Rnd1
Psmd3
Pfn1
Snx29
Rhou
Tiparp
Gipc2
Edrf1
Sugt1
Setd5
Commd1
Trip4
Cat
Spry4
Rpl15
Pcf11
Nkiras1
Irf5
Gm3667
2410002F23Rik
Paip2
Irf8
Kcnk5
Cyb5r4
Phf11d
Lsm14a
Snrpg
Pgrmc1
B4galt3
Lgr4
Ubr3
Sgpl1
Pdlim7
Herpud1
Cdk12
Ptma
Net1
Fbxo8
Cep44
Bclaf1
Acer3
Usp53
Ccdc71
Rapgef6
Psme4
Atp5b
Nop58
Pik3c2a
Fam43a
Rpl41
Kbtbd7
Hs3st3b1
Wdr25
Wars
Top1
Ell2
Ctbs
H2aw
Ywhag
Mtr
Atp5j
Tmem267
Tgoln2
Tgoln1
Flnb
Esyt2
Manf
G3bp1
Dars
Ptpa
Ndufs1
Eef1b2
Crat
Nt5dc3
Atg4d
Dpy19l4
Rab5b
Rpl10a
Ints8
Plpp1
2610042L04Rik
Rnf149
Mtfr1
Ddit3
H2az1
Nfyb
Rab43
Dynll1
Sec22b
Alg1
Irak2
Ndufa2
Ik
Fra10ac1
Selenok
Endog
Crot
Bcl2l1
Kansl2
Fut8
Becn1
Ahcy
Pih1d1
Aldh16a1
Lpar5
Tab1
Ulk1
Sp1
Gpi1
Arc
Lrrc8a
Sorbs1
Crybg2
Mrpl45
Mpv17l2
Tpi1
Nsfl1c
Polg
Hif1an