ChIP-Atlas: Target genes

Potential target genes for Hoxd9

Query protein: Hoxd9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7416187 | Embryoid Bodies
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Hoxd9's Target genes

◢ Hoxd9: Average

◣ SRX7416187: Embryoid Bodies

◢ SRX7416188: Embryoid Bodies

◢ Hoxd9: STRING

Hdx
Prdm13
Ngdn
F11r
Hoxa4
Gpr84
C1ql3
Slc37a3
Slc5a12
Map4k5
Atl1
Hoxc6
Hoxc5
Synpo
Gm973
Otp
Arhgap28
Zfp503
Notch1
Zfp473
Vrk3
Mmrn1
Atp1b4
Hoxb5
Slc9b2
Hoxb4
Hoxb3
Nkx6-1
Pdlim5
Gcnt2
Hoxd3
St3gal2
Irx1
Ccdc182
Hoxc4
Hoxa2
Hoxa1
Hoxb8
Hoxb7
Lpgat1
Hes3
Gnat3
Nkx2-2
Hoxa6
Hoxa3
Hoxa7
Cdca8
9930104L06Rik
Hoxa5
Copz1
Epha5
Rnf165
Tmem268
Tlk1
Ttr
Foxn3
Elf5
Fam174a
Slc31a2
Arfgef1
Zadh2
Tshz1
St8sia4
Trio
Apcs
Map4
Mad2l2
Draxin
Clasp2
4430402I18Rik
Rbm25
Cntnap2
Pitpnc1
Cox7a2l
Glrp1
Tshz3
Csrnp3
Pcnx
Bend4
Dnm2
Nkx2-9
Crp
Foxp2
Slc9a9
Dip2b
Baalc
Sema6b
Ntn1
Wt1
Ccn1
Radil
Krt222
Nr3c2
Gpc6
Mllt3
Slc27a4
Mbnl1
Pla2g2d
Crlf2
Hhat
Gm15517
Dph5
Gm4737
Kmt5c
Lemd2
Wdr18
Th
Atg4c
Akap6
Tnfsf13b
Gfra3
Sgpp1
Oxnad1
Dph3
Cmtr1
Gm4791
Hhip
Scn1a
Vta1
Skida1
Rnf220
Pik3r4
Ccdc154
Adipor2
Fam135b
Rara
Ndnf
Bmp7
St8sia2
Pcnx3
Map3k11
Oacyl
Sptssa
Olfr646
Atp5g2
St6galnac1
Lyrm9
Ncam1
Tob1
Mbp
Trim23
Trappc13
Shld3
Phactr3
Tph2
Vapb
Hoxb6
Zfp143
Scube2
Pou3f2
Ing3
Actn4
Mecom
Col4a2
Clasrp
Cbfa2t3
Snca
Sox6
Enpp3
Phox2b
Mapre1
Tbc1d10b
Mylpf
Hsdl2
Lysmd3
Elmo2
Hnrnpa1l2-ps2
Tpm3
Sqor
Trib2
Emcn
Ifna9
Fmo2
Cd83
Arpp21
Thrb
Aff3
Cemip2
Got2
Sema6d
Eif2s3x
Rab27a
Josd1
Gtpbp1
Tti2
Rgs5
Vdac2
Add2
Crb1
Dusp5
Xpr1
Utp4
Derpc
Chtf8
Mapk9
P4ha3
Ermn
Psd3
Chchd5
Phc2
Smad1
0610009B22Rik
Mycl
Pax8
Acot1
Casp7
Rps23
Kbtbd13
Cyp19a1
Tle3
Hand1
Ccdc60
Gcc1
Pum1
Myo10
Aven
Nsg2
Ivl
G2e3
Gja10
Tmem156
Etv3
Ccdc174
Aktip
Pakap
Tbc1d9
Stxbp6
Asap1
Pou3f3
Ppp3ca
Rprml
Narf
Asic4
Rab30
Stox2
Tcim
Mrps33
Neurod4
Marchf4
Nup107
Lta4h
Igf1
4930550C14Rik
Pbx1
Olfr298
Pex2
Ythdf3
Zkscan1
Galr3
Meis3
Zfpm1
Cd9
Zfp330
Egr2
H6pd
Prickle1
Dus1l
Pdia5
Zfand3
Spp2
Ormdl3
Megf10
Kcnip2
Mthfd2
Plaa
Gm14092
Ccbe1
Mnx1
Pik3r1
Grpel2
Marveld3
Slc35d3
Akain1
Tom1l2
Drc3
Gtf2ird2
Zc3h12c
Aebp1
Tspan5
Lrrtm2
Primpol
Casp3
Ikbke
Slc4a8
Sox5
Rragd
Celf4
Tmem178b
Ncf1
Abcc4
Ppp2r2a
Ppp1r15b
Fyn
Gucy1a1
Chrna4
Zyg11b
Garre1
Map6
B3galt1
Rnase12
Rnase11
Cd96
Fam181a
Cda
Mutyh
Elavl4
Vamp9
Zfp945
Mfng
Nol4l
Supt6
Sdf2
D1Pas1
Arrdc4
Nme6
Zdhhc2
Mfsd10
Apela
Srgap3
Sertad4
Tex14
Taf12
H2bc6
H1f4
Gphb5
Atic
Ccnd1
Scmh1
Olfr1098
Lpo
Rtn1
Eps8
Bcas1
Nin
Gse1
Ech1
Fbxw15
Art3
Percc1
BC003965
Zfp292
Megf9
Tpbg
Aqp8
Ubqln2
Cnot2
Tcerg1
Pfas
Ctc1
Dipk1a
Ajuba
Wbp11
BC049715
Srbd1
Stk33
Flrt1
Zbtb46
Hapln1
Cfl2
Zfp672
Nrg1
Tnrc18
Nms
Zfp664
Ccdc92
Skil
Tmem132b
Lpar4
Angpt4
Dnajb5
Krt9
Thsd4
Ripply1
Cux1
Nacc2
Drd2
Adcy2
Lama5
Nebl
Mef2c
Ptprj
Kbtbd6
Evi5l
Srpk2
Emp3
Cdk17
Cryzl2
Dyrk3
Ascl1
Ngef
Neu2
Plcd3
Acbd4
Enho
Jakmip2
Sumf1
Lrrn3
Purb
Btbd3
Pgbd5
Sh3pxd2a
Prkg1
Rhbdd1
C1qc
C1qb
Nell2
Eri3
Lrrn2
Dpt
Crybg3
Tro
Slc25a42
Zfhx4
Sybu
Mrfap1
Exoc5
Ap5m1
Ccdc170
Schip1
Fer
Lin28b
Lrrc4c
Ufc1
Vkorc1
Prss53
Slc35f6
Tox2
Cntn1
Srxn1
Poc5
Repin1
Gm5111
Dnah5
Polr3gl
Ankrd34a
Smarcal1
Arg1
Ankrd40
Kmt5a
Zc2hc1c
Acyp1
Muc6
Cacna1c
Cfap58
Olfr102
Olfr100
Myt1
Postn
Abr
E4f1
Tmem144
Txndc11
Glis2
Sema4b
Fbxw25
Nmnat3
Wdr6
Rarb
Ear10
Prdm6
Rora
Ski
Sos1
Mtarc1
Dhx16
Epb41l4b
Adam12
Ptpn3
Lrrcc1
Fam117a
Galk2
Cops2
Ksr1
Epb41
B3galt2
Ranbp9
Qrfp
Gpr1
Pth1r
Tcf21
Cdk19
Zc3h8
Ptprd
Kif21a
Zdhhc16
Exosc1
Fbxw7
Crtam
Epn2
Vps41
Clptm1l
Ptger2
St18
Leng9
Ppp1ccb
Ttc1
Gm14137
Gchfr
Cacna2d1
Pyurf
E130308A19Rik
Crb2
Phpt1
Mamdc4
Ajm1
Cyp2s1
Tnks2
Lrrc4
Runx1t1
BC107364
Nr4a2
Crmp1
Treml4
4933402D24Rik
Stk32a
H3c13
H2bc18
Nt5c2
Tmigd1
Dbx2
Hoxd8
Gmnn
Ralbp1
Rhbg
Abra
Wdr7
Ubl3
LTO1
Fam13c
H4c2
H4c1
H3c1
H1f1
Wipf1
Angptl7
Actr3b
Aftph
Pdpn
C2cd5
Zpbp
Spata48
Tmed10
Znrf4
Alkbh5
Mprip
Nrxn1
H4c8
H2ac10
Urm1
Tmem107
Kansl1l
Mtif3
Slc25a51
Flnb
Klhl5
Ccdc33
Tmem100
Ackr4
Fzd8
Epc1
Sall1
Coq10a
Mrps36
Sh3bp5
Cnot1
Ints14
Pacrgl
Nudt15
Rabl2
Osbp
Fzd10
Nedd9
Krt20
Fis1
Rapgef6
Man1a2
Zfp334
Qsox2
Mlip
Fam222a
Rufy3
Tbl1x
Sinhcaf
Ssr3
Cwc27
Adh6b
Nr2f2
Tle1
Spink7
Sdc1
Racgap1
Phgdh
Mn1
Lamc2
Serpinb8
Mrap
Lypd1
Zfp41
Natd1
Rpl3
D7Ertd443e
Btbd8
Atxn7l3b
Atp8b4
Gnb5
Agk
Wdyhv1
Cables1
Gm9376
Col6a5
Kcnk4
C2cd4a
Fam78b
Rnf4
Rere
Ddx39b
Dad1
Abhd4
Vamp1
Mep1a
Slc25a25
Naif1
Ptger4
Tmem255a
Gbx2
Plch1
Sprr2i
Myf5
Tfpt
Prpf31
Cox20
Hmx2
Gtf3c6
Arpp19
Wnk1
Snap25
Tfb1m
Ubr2
Arid1a
Atp6v1g1
Alyref2
Pyroxd1
Smarcad1
Rps26
Sdk2
Med25
Fuz
Asf1b
Tjp1
Eif3c
Ctbp2
Ift52
Sf3a2
Plekhj1
Rtcb
Tubb4b
Atp5l
Ccdc167
Slc7a1
Zfp628
Hoxa9
Rab28
Eef1akmt1
Vgll4
Maml3
Nrp2
Gm3448
Gm3417
Tcte3
Ermard
Scp2
Atg2a
Uts2b
Rap2b
Marchf10
Zfp608
Scml4
Spata7
Gpr19
G6pc2
Celf3
Iglon5
Lgals2
Trerf1
Mup19
Irx6
Tmem60
Phtf2
Slc9a6
Ndst1
Prkag2
Aldh3a1
Vmn2r23
Nr2f1
Smug1
Tshz2
Cstf2t
Pabpc1
Btg3
Ift46
Sstr2
Zfp651
Pmpcb
Fmc1
Rad9b
Dnajb2
A630095N17Rik
Igsf5
Nek1
Sox2
Gdf5
Eppin
Il5ra
Mmp28
Spag9
Bco1
Ush2a
En1
Ptn
Zswim5
Sall4
Pfkp
Rfx4
Cacybp
Khdc4
Spen
Mup2
Mup15
Zfp697
Grid2
Sc5d
Lratd2
Zbtb18
Hpgd
Mapk6
Lmbr1
Cldn34d
Fndc3a
Rab40c
Olfr1167
Esrrg
Ndufaf2
Ercc8
Gpn3
Fam216a
Dctn3
Arid3c
Ube2o
Slc14a2
Prkab2
Uchl4
Tcta
Rhoa
Fli1
Gask1b
Igsf9
Thnsl1
Enkur
Akr1cl
Tgif1
Shisa9
Padi4
Dach1
Gja1
Eda
Mup20
Osbpl9
Zc4h2
Gm6588
Ttc21b
Mlkl
Lrp12
Parm1
Gsk3a
Dipk1b
Cpsf4l
Pccb
Nrp1
Tspyl4
Slc38a2
Fhdc1
Itgb8
Nkx1-2
Nemf
Nop53
Nfe2
C8b
Rabep2
Mrpl4
Atp6v0e2
Dll4
Slx4ip
Mkks
Abca7
Wdr41
Ldhal6b
Lrrc15
Cldn14
Usp29
Peg3
Trmt12
Cntn5
Dcp1b
Ammecr1l
Sec14l5
Fam160a1
Ezh2
Prdm10
Akirin2
Lrrc18
Mettl2
Golgb1
Rabgap1l
Cul3
Cad
Hspa8
Kbtbd8
Cep120
Meox1
Csf3
Cdh6
Dars
Gsg1l2
Glp2r
Caskin1
Mlst8
Olfr689
Micu3
Rubcn
Fyttd1
Gns
Unc93a
Psmd5
Cutal
BC048671
Mybpc1
Tatdn1
Ndufb9
Gcnt7
Git2
Ankrd13a
Mapk1
4921517D22Rik
Dscaml1
Pgk1
Nlrp10
Eif3f
Lpar6
Chst8
Ankrd53
Cpm
Krtap19-1
Tanc1
Spink10
Fbxo38
Igfbp3
Tlx3
Slc25a39
Zfp692
Marcks
Agfg1
Rph3al
Rps15a
Rab18
Cxxc4
Vipas39
Ahsa1
Lrrc2
St7
Camsap2
Tle4
Evpl
Rev3l
Abtb2
4930402H24Rik
Ypel1
Pknox2
Cnot3
Eya2
Serinc4
Hypk
Dmtn
Rad18
Foxd3
Usp4
Gpr12
Gpx1
Tjap1
Insig1
Zfp663
Olfr1129
Ttll11
Spon1
Rcan1
Rnf130
Myh2
Kctd7
Nhlh2
Ric8b
Gfod1
Fgd4
Rab37
Traf1
Mvb12a
Tmem87b
Maf
Calca
Itch
Reln
Map2
Zfp521
Sh3gl3
Eef2
Fam135a
Zfp689
Ogfod3
Hexdc
Rab13
Atg10
Ip6k2
Zfp516
Usp35
Kctd21
Hnrnpd
4932414N04Rik
Fgfrl1
Lrrn1
Sh3pxd2b
Ank2
Cnr1
Fgfr2
Tfdp2
Rcan2
Ldha
Snrpc
Ano3
Ppp2r2d
Mapk1ip1
Olfml1
Mllt10
Rnmt
Fam210a
Rusf1
Dhrs3
Lipc
Zfp983
Dnaic2
9030025P20Rik
Fam110b
Cox6b1
Zup1
Tcf12
Zmiz1
Colec12
Tmco5
Foxp1
Nek9
Ecpas
Cdh9
Hmcn1
Prkag1
Jazf1
Ptpre
Aldh1a2
Col6a6
Fam187a
Syt2
Pnoc
Fbxl7
Gm10710
Dchs2
Eogt
Slit3
Mid1
Elavl2
Shisa3
Prickle2
Trit1
Fam71b
Irs2
Olfr598
Camk1g
P4ha2
Iqsec1
Trappc6b
Pnn
Olfr305
Rxrg
Galnt11
Cacng4
Tmem178
Tbcel
Zmat1
Cd36
9330159F19Rik
Siglec1
Mitf
D630045J12Rik
Smarcd3
Hspa14