ChIP-Atlas: Target genes

Potential target genes for Hoxd9

Query protein: Hoxd9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7416188 | Embryoid Bodies
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Hoxd9's Target genes

◢ Hoxd9: Average

◢ SRX7416187: Embryoid Bodies

◣ SRX7416188: Embryoid Bodies

◢ Hoxd9: STRING

Pcnx3
Map3k11
Hoxc6
Hoxc5
Map4k5
Atl1
Prdm13
Sptssa
Notch1
Khdc4
F11r
Hoxa4
Crb1
Gpr84
Rab30
Slc37a3
Rbm25
Ttll11
Osbpl9
Rnf165
Tmem268
Hoxd3
Atp1b4
Synpo
Hoxb4
Hoxb3
Hoxc4
Arfgef1
Tmem97
Elf5
Sqor
Dph5
Ccdc182
Baalc
Cux1
Zfp503
Wdr7
Mbnl1
Itch
Scn1a
Nkx2-2
Plcd3
Acbd4
Gask1b
Zfp473
Vrk3
Rab27a
Hoxa2
Hoxa1
Hoxb5
Csrnp3
E4f1
Gpc6
Crlf2
Prdm6
Rhbg
Hoxb6
Zadh2
Tshz1
Ascl1
Lpgat1
Ccnd1
Hoxa6
Hoxa5
Ngdn
Hes3
Ccdc174
Nudt1
Mrm2
Ptprd
Lmbr1
Phgdh
Tmem156
Poglut3
Chst12
Sumf1
Vamp9
C1ql3
Rabl2
Dynll1
Hoxa3
Mllt3
Men1
Poc5
Wt1
Clasp2
Galk2
Cops2
Stox2
Zfp330
Ric8b
Ss18l2
Sec22c
Slc7a1
Cnr1
Mmrn1
Egr2
Phox2b
Zfp945
Fzd8
C1qtnf4
Sall4
Cfap58
Cachd1
Bbs2
Cemip2
Hibadh
Atg2a
Elmo2
Neurod4
Nkx6-1
Otp
St8sia2
Gcnt2
BC051142
Gm973
Nacc2
Kmt5c
Mrpl33
Mecom
Trio
Hsdl2
Ubp1
Rhob
Oxnad1
Dph3
Phpt1
Mamdc4
Ajm1
Rabep2
Hand1
H4c8
H2ac10
Rara
Cox7a2l
Fam181a
Pth1r
Stxbp6
Cldn34d
Tmem255a
Setd4
Cbr1
Zc4h2
Olfr298
Rnase12
Rnase11
Wnk1
Tnrc18
Fbxw7
Skil
Caml
Krt9
Kcnk4
Fyn
Ppp1ccb
St3gal2
Kbtbd13
Ccdc33
Med25
Fuz
Pdia5
Vmn2r23
Sf3a2
Plekhj1
Mutyh
Tshz3
Hes1
Cnot3
Srgap3
Crp
Cryzl2
Hhip
Spata7
Ell
Olfr646
Ttc1
Foxp2
Spred3
Ggn
Celf3
Barhl1
Vta1
0610009B22Rik
Rag2
Iftap
Pitpnc1
Galr3
Tlk1
Acot1
Trib2
Gfra3
Lrrtm2
Fmc1
Rab18
Got2
Cad
Lysmd3
Nol4l
Gnat3
Spen
Ift46
Rnf44
Zfp41
Lrrfip1
Zfand3
Sdhaf1
Ermn
Kbtbd8
Cyp2s1
Nkx2-9
Eif4g2
Cmtr1
Gm4737
Tmem132b
Asf1b
Aff3
Gm4791
Trrap
Drd2
Rnf220
Col4a2
Ech1
Tjap1
Irx1
Lrrn3
Adipor2
Mycl
Aktip
Tnks2
Fzd3
Fbxo16
D630045J12Rik
Gfod1
Ccn1
Esrrg
Rad9b
Hmox1
Tcerg1
Lyrm9
Man1a2
Itgb8
Coq7
Pacrgl
Smarcal1
Gab2
Mthfd2
Zc3h12c
Actn4
Lta4h
Agfg1
Epha5
Ankrd6
Adtrp
Zfp628
Dcaf12
Mob3b
Ifnk
Lrrcc1
Tnfsf13b
Tti2
Vapb
Eif2s3x
Grrp1
Slc25a42
Tom1l2
Drc3
Hsp90b1
Abca7
G2e3
Efna3
Oacyl
Mybpc1
Ehbp1
Tox2
Eppin
Dcaf11
Amer2
Mpp3
Rragd
Flrt1
Lhpp
Eci1
Rack1
Megf10
Zfp143
H4c2
H4c1
H3c1
H1f1
Syt2
Traf1
Txndc11
Apcs
Wdr18
Meis3
Evi5l
Serinc1
Cyp19a1
Mvb12a
BC107364
Smad1
Lemd2
Dbx2
H3c11
H2ac22
H2bc22
Th
Phactr3
Gbx2
Tcf4
Dennd5b
Ptger2
Lin28b
Dhrs7b
Nr4a3
Tob1
Ajuba
Dbx1
Vps41
Purb
Pyroxd1
Nol6
Gpn3
Fam216a
Nrg1
Map4
Ndufs5
Hnrnpa1l2-ps2
Irf2
Pax8
Wdr76
Mfap1a
Zswim5
Muc6
Msh5
Clic1
Sox6
Cda
Zfp689
Foxo3
E130308A19Rik
Slc31a2
Krt90
Trip4
Pclaf
Clrn1
Skida1
Tbc1d10b
Mylpf
Atp6v1g1
Rbpms
Fgd4
Sgpp1
Mrps36
Cntf
Klf3
Prdm10
Etv3
Olfml1
Tshz2
Asic4
Parp16
Osbp
Kansl1l
Vkorc1
Prss53
Ppp1r9a
Ntn1
Elavl2
Snx5
Mgme1
Ubqln2
Rps23
Ogfod3
Hexdc
Sc5d
Atg4c
Slc9a8
Mbd3
Rora
Fgfrl1
Nupr1
Cntrl
Ppp2r2a
Nr4a2
Snx30
Slc9b2
Snx15
Hspa9
Limch1
Dnm2
Pum1
Rbpj
Foxn3
Myo1b
Chrna4
Tbl1x
Znrf4
Shisa3
Scube2
Tdp1
Efcab11
Slc4a8
Dnajb2
A630095N17Rik
Tgif1
Fbxl16
Nap1l4
Ndufs2
Adamts4
Actg1
Slc38a2
Snrpc
Zfp710
Zfp512b
Il5ra
Sox1
Alkbh5
Sos1
Myo9b
Haus8
Hoxa9
Lrrc2
Triobp
Nop53
Pnoc
Lrrc4
Zdhhc2
Haus4
Tle3
Wdyhv1
Gapvd1
H6pd
Mfng
Sh3bp5
Ap3m2
Gdpd5
Usf3
Myo10
Cxxc4
Foxp1
H2az2
Clasrp
Postn
Dtx3
Lpar4
Rnf111
Tcim
Nfam1
Abcg2
Snap25
Cxxc5
Angpt4
Zfp536
Sp5
Glce
Sepsecs
Hpgd
Slc25a25
Naif1
Supt3
Eef1akmt1
LTO1
Lbr
Gdpgp1
Cib1
Marchf10
Nr2f1
Fmo2
Repin1
Gm5111
Lck
Ppan
Manea
Scmh1
Eif3c
Acyp2
Dhx16
Nedd9
Arid3a
Pou3f3
Garre1
Rab28
Psap
Gm15517
Srrt
Lsm6
Cops3
Chchd5
Thrb
Wdr6
Slc5a12
Fam210b
Gm3383
Maf
Hoxb9
Nup107
Zfp708
Kremen2
Bdnf
Emp3
Ksr1
Dad1
Abhd4
Rtcb
Nrp2
Vmo1
Gltpd2
Spcs1
Glt8d1
Slc35f2
Cables1
Naxd
Stk33
P4ha3
Comt
Calml4
Rufy3
Abr
Kif21a
Piwil4
Rai1
Ppp2r2b
Fignl1
Selenof
Hs2st1
Npc2
Isca2
Nrxn1
Fgfr2
Smug1
Unc45a
Hddc3
Ppp3ca
AB010352
Stat3
Ddx3x
Daam2
Spag9
Uba1
Rab33b
Nme6
Nell2
Lrtm2
Cacna2d4
Glrp1
Pcnx
Psd3
Adcy2
Pik3ca
Acod1
Lpo
Fbln1
Ppp1r15b
Nr2f2
Ctbp2
Eya2
Ccdc42
Rnf122
Uts2b
Mtmr6
Pgr15l
Hmcn2
Dpt
Atp5l
Rad18
Slc9a7
Map6
Zdhhc16
Exosc1
Nek9
Lars
Tbp
Psmb1
Gm3448
Gm3417
9030025P20Rik
Lama5
Ttc21b
Pvr
Gm3488
Nebl
Bco1
Zfp354b
Commd1
Zrsr1
Crmp1
Pard3
Nfia
Zfp334
Rnf10
Zbtb18
Srpk2
Smarca2
Stat5b
Nub1
Spp2
Foxj2
Aplp2
Ica1l
Actr3b
Ano3
Pmpcb
Mtarc2
Ankrd53
Dab2ip
Erbb3
Mt2
Sall1
Trp53inp1
Atic
Stxbp5
Alpk3
Vps4b
Gucy1a1
C1qc
C1qb
C2cd4a
Rbm39
Aqp8
Zfp146
Tpm3
Ankrd40
Rbl2
Pfas
Ctc1
Mkrn3
Fam222a
Dhx9
Vamp1
Elp3
Mllt10
Prickle2
Trim67
Fbxw25
Rnf4
Atp5o
Cd83
Fer
Ripor1
Ndnf
Zfp672
Uchl4
Tfdp2
Wdr41
Elk1
Skor1
Arfgap2
Mad2l2
Draxin
Fam20c
Zbtb24
Pex2
Pik3r1
Marveld3
Rasgrp3
Mrps14
Ndst1
Nlrp10
Eif3f
Meis2
Pkd2l1
Zcchc17
Snrnp40
Dipk1a
Urm1
Tcea3
Xlr3b
Slc9a9
Mnx1
Mfsd10
Rap1gds1
Rcn3
Foxd3
Tia1
Dnaja3
Coro7
Sgk1
Gm14092
Dct
Fbp2
Auts2
Dusp5
Pou2f1
Ptn
Lama1
Csdc2
Sertad4
Tfpt
Prpf31
Crebrf
Lrp8
Fignl2
Vash1
Usp29
Peg3
Rcan2
Adam7
Tatdn1
Ndufb9
Neurog2
Dus1l
Fbxw15
Kmt5a
Gm14137
Gchfr
Klhl9
Supt7l
Slc4a1ap
Baz1b
Fosb
Mterf4
Mrfap1
Alyref2
Parp4
Cenpj
Pax2
Tex14
Cbfa2t3
Crybg3
Tfap2a
Mbp
Mapk9
Plch1
Msl1
Ank3
Zkscan1
Rarb
4933402D24Rik
Gm3667
Angptl7
Mep1a
Dcp1b
Miip
Fv1
Ush2a
Trappc6a
Bloc1s3
Plxnb2
Gabpb2
2310033P09Rik
Zfp608
Dhrs7c
Pdpn
Zfp84
Tmem11
Pla2g5
Serpinb8
Nms
Rpl3
Kifap3
Gsx2
Tmem100
Natd1
Ecpas
Shoc2
Bbip1
Taf4
Cklf
Smarcd3
C2cd5
Lpar6
Ccbe1
Vpreb3
Gm867
Fndc7
Arl8b
Schip1
Tmem231
Insr
Arid1a
Prdm5
Actr1b
4933424G06Rik
Lrp12
D16Ertd472e
Car14
Ncam1
Elavl4
St18
Ptpre
Tent2
Tcte3
Ermard
Rasal2
Exoc1
U2af2
Tfb1m
Mapk1
Vmac
Ndufa11
Qrfp
Gpr19
Hrob
Otx1
Map2
Frmd4a
Tbc1d10c
Ppp1ca
Samd4b
Gmfg
Akap11
Ramp3
Igdcc3
Zfp983
Zfp51
Prkag1
Tyk2
Radil
Tmem178b
Wbp11
BC049715
Cxcr4
Gm6712
Vill
Celf2
Lnpep
St7
Dcn
Gm3435
Mb21d2
Cops7a
Ring1
H2-Ke6
Dhcr7
Ncaph
Gja10
Gm5165
Asb4
Agpat3
Hyal2
Mrpl4
Nt5c2
Ip6k2
Syt4
Tmc8
Tmc6
Sost
Sort1
Ccdc9
Grpel2
Cacna1c
Dctn3
Arid3c
Scp2
Dnajc22
Meox1
Usp4
Psmc1
Pofut2
Lfng
Zfp521
Nsg2
Cnot2
Crtam
Slc23a4
Dnajb5
Rnasel
Pxmp4
Unc13b
Pmf1
Grb10
Adam12
Tspyl2
Utp4
Derpc
Chtf8
Stk32a
Ufsp2
1700029J07Rik
Tsen34
Mboat7
Palld
Rev1
Ypel4
Kif3b
Exoc5
Ap5m1
Shcbp1
Wdr5b
Arg1
Zfand2a
Spred2
Tecr
Pik3r4
Aebp1
Tcf12
Myl7
Mfge8
Tubb4b
Fez1
Ccng1
Ppp1r14c
Krt222
A930009A15Rik
Emcn
D7Ertd443e
Trappc4
Rps25
Shc1
Cks1b
Rnd3
Csf2ra
Gtf2ird2
Fsip1
Hgh1
Rere
Akirin2
Hikeshi
Cdc45
Ipo11
Cfdp1
Eda
Gm6588
Arid4a
Gja1
Ednrb
Esyt1
Kbtbd6
Gcnt7
Fbxl7
Oscar
Ndufa3
Puf60
Spata6
Slc25a18
Trim23
Trappc13
Shld3
Cdh9
Stac
Elp6
Map3k4
Sgo1
Fndc3a
Cul3
Kpna1
Ythdf3
Tcf21
Rph3al
Ralyl
Zc3h6
Zfpm1
Gpr12
Zfp318
Phf5a
Aco2
Chst2
Btbd3
Micu3
Cenpc1
Flad1
Xpr1
Cabp1
Igsf9
Nup210
Prr5l
Commd9
Lasp1
Trp53bp2
Tut1
Sgsm1
Agk
Sys1
Mrps33
Bbc3
Zfp9
Hhat
Atp6v0e2
Calca
Ppp2r2d
Mapk1ip1
Sla2
Rnase1
Npff
4930558C23Rik
Gm6551
Zpbp
Spata48
Pfkp
Ccp110
Tmem60
Phtf2
Aven
Asap1
Arhgap36
Rest
Treml4
Rab40c
Cotl1
Caskin1
Zmiz1
Tppp3
Sema4b
Mpped2
Mrps18a
Zfp58
Cdca8
9930104L06Rik
Ngef