ChIP-Atlas: Target genes

Potential target genes for Hoxd9

Query protein: Hoxd9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7416188 | Embryoid Bodies
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Hoxd9's Target genes

◢ Hoxd9: Average

◢ SRX7416187: Embryoid Bodies

◣ SRX7416188: Embryoid Bodies

◢ Hoxd9: STRING

Pcnx3
Map3k11
Hoxc6
Hoxc5
Map4k5
Atl1
Prdm13
Sptssa
Notch1
Khdc4
F11r
Hoxa4
Crb1
Gpr84
Rab30
Slc37a3
Rab19
Rbm25
Ttll11
Osbpl9
Rnf165
Tmem268
Atp6v1g1
H4c11
H2bc14
Hoxd8
Hoxd4
Hoxd3
Sv2b
Maml2
Atp1b4
Synpo
Pkdcc
Efnb2
Cxxc4
Hoxb4
Hoxb3
Rbp2
Hoxc4
Arfgef1
Olfr71
Speer4a
Tmem97
Elf5
Ubl4b
Sqor
Dph5
Ccdc182
Baalc
Cux1
Zfp503
Kank1
Wdr7
Mbnl1
Itch
Scn1a
Dhx8
Nkx2-2
Plcd3
Acbd4
Gask1b
Zfp473
Vrk3
Foxf2
Skap2
Ffar4
Ifrd1
Rab27a
Prkar2b
Hoxa2
Hoxa1
Myo1d
Hoxb6
Hoxb5
Csrnp3
E4f1
Gpc6
Crlf2
Prdm6
Csrp3
Rhbg
Hoxb7
Zadh2
Tshz1
Ascl1
Ccdc136
Lpgat1
Ccnd1
Hoxa6
Hoxa5
Hoxa3
Gm527
Ngdn
Hes3
Ccdc174
Calcrl
Nudt1
Mrm2
Ptprd
Lmbr1
Alb
Phgdh
Tmem156
Poglut3
Chst12
Sumf1
Vamp9
C1ql3
Rabl2
Dynll1
Hoxa7
Mllt3
Men1
Map4k2
Poc5
Itgb8
Sox21
Smg9
Olfm2
Meox1
Rpgrip1
Cacnb2
Wt1
Mab21l2
Clasp2
Galk2
Cops2
Ttc30a1
Stox2
Zfp330
Ric8b
Cubn
Ss18l2
Sec22c
Nktr
Zfp703
Susd1
Slc7a1
Kif13b
Ttc39b
Dll1
Cnr1
Mmrn1
Egr2
Phox2b
Zfp945
Fzd8
C1qtnf4
Sall4
Cfap58
Cachd1
Bbs2
Cemip2
Hibadh
Ebf1
Zc2hc1c
Ppp2r5b
Atg2a
Etv6
Smug1
Neurod4
Elmo2
Grap2
Nkx6-1
Tox3
Pex5l
Gucy1b2
Otp
St8sia2
Wnt10a
Gcnt2
Pomc
BC051142
Gm973
Nacc2
Dap3
Kmt5c
Mrpl33
Mecom
Trio
Fbxo28
Hsdl2
Ubp1
Rhob
Oxnad1
Dph3
Phpt1
Mamdc4
Ajm1
Rabep2
Hand1
H4c8
H3c8
H2ac10
Rara
Cnga4
Cox7a2l
Fam181a
Mpl
Pth1r
Stxbp6
Cldn34d
Tmem255a
Setd4
Cbr1
Zc4h2
Olfr298
Rnase12
Rnase11
Wnk1
Tnrc18
Rps10
Fbxw7
Skil
Caml
Krt9
Kcnk4
Gpr137
Esrra
Catsperz
Pigm
Fyn
Thumpd3
Cpsf1
Rarb
Ociad2
Zfp423
Ppp1ccb
St3gal2
Kbtbd13
Ccdc33
Med25
Fuz
Pdia5
Vmn2r23
Sf3a2
Plekhj1
Amh
Toe1
Mutyh
Hpdl
Tshz3
Bahcc1
Hes1
Cnot3
Ror2
N4bp2l1
Adtrp
Srgap3
Tjp2
Crp
Alox5ap
Cryzl2
Hhip
Spata7
Efcab5
Arhgap28
Myo10
Ell
Plxnc1
Olfr646
Ttc1
Foxp2
Spred3
Ggn
Celf3
Barhl1
Vta1
1700010B08Rik
0610009B22Rik
Rag2
Iftap
Psmd12
Pitpnc1
Dennd5a
Galr3
Cpa5
Tlk1
Acot1
Ip6k3
Gm38499
Trib2
Dtx4
Gfra3
Lrrtm2
Ncoa7
Prkar2a
Fmc1
Rab18
Hoxc8
Got2
Acsf2
Ripor2
Fgl2
Slc5a6
Cad
Atraid
Lysmd3
Lhfpl2
Nol4l
Gnat3
Upk3bl
Spen
Clmn
Ift46
Arcn1
Rnf44
Zfp41
Rtl1
Lrrfip1
Zfand3
Iqca
Acvr1b
Syne4
Sdhaf1
Ermn
5730409E04Rik
Scarb2
Kbtbd8
Vmn1r53
Cyp2s1
Tubb6
Tbc1d22a
Dst
Nkx2-9
Eif4g2
Jund
Iqcn
Trim59
Cmtr1
Gprc5d
Gm4737
Tmem132b
Asf1b
Aff3
Gm4791
Best3
Hipk3
Trrap
Tmem130
Kifc3
Drd2
Rnf220
Col4a2
Hnrnpl
Ech1
Tmem167b
Txndc11
Ccdc88c
Tjap1
Irx1
Pold3
Lrrn3
Adipor2
Smim8
Cbfb
Mycl
Aktip
Fbxo16
Tnks2
Fzd3
D630045J12Rik
Gfod1
Ccn1
Esrrg
Rad9b
Hmox1
Tcerg1
Lyrm9
Lpp
Dpyd
Gpatch2l
Man1a2
Coq7
Pacrgl
Kdm8
Smarcal1
Cep128
Gab2
Mthfd2
Mob1a
Zc3h12c
Actn4
Lta4h
Ppp1r9a
Agfg1
Epha5
Ankrd6
Zfp628
Ssc5d
Nat14
Gm36210
Iglon5
Dcaf12
Mob3b
Ifnk
Lrrcc1
Adgrv1
Tnfsf13b
Tti2
Vapb
Uncx
Eif2s3x
Prickle1
Lin28a
Zfp593
Grrp1
Gm30191
Slc25a42
Ece1
Tom1l2
Drc3
Tubg2
Plekhh3
Ttc41
Hsp90b1
Cbx2
Galnt14
Cnn2
Abca7
G2e3
Asxl3
Efna3
Phc2
Oacyl
Megf10
Mybpc1
Ehbp1
Tox2
Tmigd1
Wfdc6a
Eppin
Dcaf11
Amer2
Mpp3
Rragd
Flrt1
Lhpp
Pabpc4l
Eci1
Pias4
Rack1
Mafb
Zfp143
H4c2
H4c1
H3c2
H3c1
H2ac4
H1f1
Syt2
Traf1
Apcs
Wdr18
Meis3
Evi5l
Serinc1
Cyp19a1
Mvb12a
Bst2
BC107364
Fgd3
Smad1
Lemd2
Dbx2
H3c11
H2bc22
H2ac22
H1f5
Mtss2
Th
Phactr3
Gbx2
Tcf4
Dennd5b
Engase
Ptger2
Slc44a3
Lrfn2
Lin28b
Dhrs7b
Nr4a3
Tob1
Ajuba
Slc22a22
Dbx1
Crkl
Vps41
Meis2
Purb
Rtn4rl1
Pyroxd1
Nol6
Gpn3
Fam216a
Nrg1
Il3
Csf2
Map4
Ndufs5
Hnrnpa1l2-ps2
Irf2
Pax8
Wdr76
Mfap1a
Zswim5
Muc6
Msh5
Clic1
Sox6
Nkx2-6
Arhgap8
Lck
Cda
1700122O11Rik
Zfp689
Foxo3
E130308A19Rik
Epha8
Ctdsp1
Slc31a2
Krt90
Krt82
Trip4
Pclaf
Clrn1
Skida1
Mllt10
Rnf169
Mras
Tbc1d10b
Septin1
Mylpf
Rbpms
Fgd4
Prkd3
Higd1c
Sgpp1
Ivd
Cntf
Mrps36
Gtf2h4
Klf3
Prdm10
Gm7244
Srpx
Mtcl1
Etv3
Olfml1
Tshz2
Asic4
Parp16
Osbp
Kansl1l
Vkorc1
Prss53
Bckdk
Atrn
Ntn1
Elavl2
Snx5
Mgme1
Cxcl12
Ubqln2
Rps23
Ogfod3
Hexdc
Sc5d
Bicd1
Atg4c
Sp9
Dach1
Slc9a8
Tmem260
Uqcr11
Mbd3
Rora
Fgfrl1
Nupr1
Thsd4
Cntrl
Ppp2r2a
Nr4a2
Snx30
Slc9b2
Snx15
Sac3d1
Hspa9
Limch1
Dnm2
Pum1
Rbpj
Ret
Foxn3
Sgca
Ppp1r9b
Prtg
Sirt4
Foxk1
Myo1b
Chrna4
Tbl1x
Grem2
Znrf4
Shisa3
Tle4
Pgm2
Scube2
2810006K23Rik
Klhdc8a
Mphosph9
Tmem200b
Tdp1
Efcab11
Slc4a8
Dnajb2
A630095N17Rik
Tgif1
Metrn
Fbxl16
Nap1l4
Ndufs2
Adamts4
Fscn2
Actg1
Slc38a2
Snrpc
Zfp710
Zfp512b
Samd10
Prpf6
Gas1
Riox2
Rptor
Iigp1
Il5ra
Sox1
Llgl2
Gtf2a1
Alkbh5
Sos1
Cyren
Mrpl11
Myo9b
Haus8
Reep5
Hoxa9
Hoxa10
Tdgf1
Lrrc2
Triobp
Ccdc171
Nop53
Pnoc
Dach2
Lrrc4
Zdhhc2
Haus4
Tle3
Ndufc2
Tmem53
Col6a4
Wdyhv1
Atad2
Kcna10
Tatdn2
Gapvd1
H6pd
Mfng
Sh3bp5
Ap3m2
Gdpd5
Usf3
Foxp1
H2az2
Clasrp
Postn
Dtx3
Arhgef25
Lpar4
Rrp15
Lrch3
Rnf111
Tcim
Inka2
Ddx20
Adora2a
Nfam1
Hgsnat
Abcg2
Iffo2
Snap25
Cxxc5
Angpt4
Zfp536
Sp5
Usp20
Tor1a
BC005624
Glce
Sepsecs
Hpgd
Slc25a25
Naif1
Myo6
Supt3
Eef1akmt1
Mafk
LTO1
Ctif
Sema3f
Senp6
Lbr
Gdpgp1
Cib1
Marchf10
Macf1
Rusf1
Nr2f1
Scrn1
Fam78b
Fmo2
Mfsd9
Tmem182
Zfp775
Repin1
Gm5111
Sst
Ppan
Angptl6
Psd3
Ppp6r3
Ndufb4c
Mtmr3
Rhcg
Manea
Scmh1
Wdr6
Eif3c
Acyp2
App
Dhx16
Nedd9
R3hdm4
Kiss1r
Arid3a
Pou3f3
Garre1
Mrpl23
Rab28
Psap
Gm18905
Gm15517
Acp4
Manbal
Msantd1
Trip6
Srrt
Lyplal1
Lsm6
Nt5m
Cops3
9430069I07Rik
Chchd5
Thrb
Dalrd3
Nrcam
Slc5a12
Fam210b
Gm3383
Foxn4
Maf
H2-Q8
H2-Q6
Hoxb9
Nup107
Gm5544
Zfp708
Paqr4
Kremen2
Greb1
Bdnf
Wdr66
Emp3
Ccdc114
Frmd4b
Ksr1
Dad1
Abhd4
Rtcb
Nrp2
Shh
Snai1
Vmo1
Psmb6
Gltpd2
Spcs1
Glt8d1
Rab11fip5
Slc35f2
Olfr1441
Cables1
Spock2
Hdhd2
Naxd
Stk33
P4ha3
Txnrd2
Comt
Calml4
Rufy3
Abr
Kif21a
Piwil4
Rai1
Ppp2r2b
Fignl1
Gng2
Selenof
Hs2st1
Npc2
Isca2
Cdhr3
Nrxn1
Fgfr2
Unc45a
Hddc3
Ppp3ca
AB010352
Stat3
Ddx3x
Daam2
Map1b
Kif2c
Spag9
Zfp36
Paf1
Med29
4930447A16Rik
2210016L21Rik
Uba1
Rab33b
Nme6
Nell2
Arhgef10l
Btg2
Lrtm2
Cacna2d4
Glrp1
Pcnx
Adcy2
Pik3ca
Acod1
Lpo
Fbln1
Ppp1r15b
Nr2f2
Ctbp2
Ivl
Evx1
Eya2
Ccdc42
Rnf122
Uts2b
Mtmr6
Pgr15l
Hmcn2
Dpt
Atp5l
Rad18
Slc43a1
Slc9a7
Map6
Zdhhc16
Exosc1
Nek9
Pdlim4
Tmtc4
Lars
Tbp
Psmb1
Gm3448
Gm3417
9030025P20Rik
Lama5
Ttc21b
Pvr
Gm3488
Nebl
Slitrk6
Bco1
Zfp354b
Commd1
Zrsr1
Crmp1
Pard3
Sh3pxd2a
Nfia
Ifitm6
Zfp334
Mroh5
Rnf10
Coq5
Zbtb18
Srpk2
Smarca2
Stat5b
Nub1
Gse1
Dnm3
Spp2
Foxj2
Odam
Prmt3
Aplp2
Ica1l
Actr3b
Ano3
Pmpcb
Mtarc2
Hes7
Ankrd53
Egln2
Cyp2t4
Garnl3
Dab2ip
Erbb3
Mt2
Rapgef4
Sall1
Clstn2
Trp53inp1
Atic
Stxbp5
Ankrd1
Mpp7
Wnt1
Ddn
Alpk3
Vps4b
Gucy1a1
C1qc
C1qb
C2cd4a
F830045P16Rik
Rbm39
Aqp8
Cdk5rap3
Zfp146
Tpm3
Dnajb13
Ankrd40
Rbl2
Pfas
Ctc1
Tpd52l2
Abhd16b
Mkrn3
Tnfaip8l2
Fam222a
Fhod3
Abraxas2
Dhx9
Vamp1
Elp3
Prickle2
Trim67
Hlcs
Fbxw25
Selenoi
Rnf4
Tnip1
Atp5o
Cd83
Fer
Vps37b
Ripor1
Ndnf
Zfp672
Sh3bp5l
Uchl4
Tfdp2
Tub
Gga2
Wdr41
Slc1a2
Elk1
Skor1
Pacsin3
Arfgap2
Mad2l2
Draxin
Fam20c
Zbtb24
Olfr572
Olfr571
Pex2
Pik3r1
Marveld3
Cuedc1