ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: MSX2 | Average
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◣ MSX2: Average

◢ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
RBL2
PSG5
PSG9
ARHGAP5
DUX4
PLA2G4D
FRG2C
PSG1
MAMDC2
MTRNR2L8
PSG11
SLC5A10
CCDC200
SEC22B
EXOSC2
WWP1
RNF43
NIPSNAP1
AP3D1
WDR93
PEX11A
PSG7
MTRNR2L1
HSD17B4
MTRNR2L2
MSH3
DHFR
ADAM17
SIRT4
PSG8
PSG3
YTHDF1
CCDC141
RAB17
ZDHHC1
TMEM52B
ITGAM
SIX2
COL23A1
PPP1R14D
TXNRD1
SLBP
MTDH
LRP2
ANKRD23
PSG4
BCL2L13
ATP6V1E1
CRPPA
GTPBP4
FAM110A
ATP2B1
DPEP2
IFNAR1
KRTAP2-1
LYRM1
DCUN1D3
PIWIL3
RABGGTB
C1QTNF6
TMTC2
MIS12
DERL2
SLC10A6
KRTAP3-1
ENTPD1
NAGLU
CDH1
PATJ
PSPN
C18orf21
SLCO2A1
ANKRD40CL
GSTO1
ADGRG3
RYK
FRG2
ENPEP
COLEC12
TMEM107
FRY
DNAJC15
PKIB
RASA2
BACE1
PHLDB2
GEMIN2
AMN1
ANKRD1
SEMA6A
CCDC81
COMMD8
CDK19
AMD1
ABLIM1
SLC7A6
MEST
SFXN5
LNX1
RARS1
PXMP4
ARHGEF18
SLC19A3
LIMS4
OSBP
UBE2J1
FDFT1
SH3BP4
EHF
EFNA1
HECTD1
PRKCZ
DLG2
LIMS1
SH3YL1
ACP1
IL1R1
FAM89A
SLC45A4
SYBU
OLFML1
PRKRIP1
TSPAN10
NPLOC4
CD55
OR10V1
EID2
SLC7A7
ID3
TRMT9B
FGD3
NTAN1
SLC18A1
ZNF474
TRPM6
SH2D4A
VPS37C
MRPS23
ATP6AP2
ZNF175
TMEM88B
ANKRD65
PTPN1
KMT2E
ZNF749
PTTG1IP
TTC23L
BCAS4
CTPS1
TAF6
CNPY4
ZNF592
TMEM245
PSG2
TMEM212
CHST6
CCR5
CLTC
ZNF503
SLC15A2
ZNF343
PACSIN2
LSM14A
NIBAN2
FOS
ZNF407
SAA1
ACVR1
ITGA2
IKZF3
ACER3
H2BC5
H1-4
TACC1
LDLR
SLC44A1
HMOX1
CLCN4
GLB1
LETMD1
DECR2
KIT
KRT71
IL34
BRIP1
USP6NL
NKX2-3
KLHL5
CXCL2
BABAM1
NR4A1
PLAAT5
STARD8
BAHCC1
ZNF367
GSTA4
H1-2
PKP2
RGPD2
RGPD1
LGR5
C6orf163
OLR1
TET1
ERP27
CALML5
SIX1
ZNF398
SLC20A2
WBP1L
P2RX6
CROCC2
LHX8
POU5F1
INSL4
SETD4
MARVELD3
ZNF641
RALBP1
RBM15
PFDN4
HACD2
SLC7A9
FBL
ATP13A2
MGARP
BCAR1
ADGRF4
TMPPE
SAMD7
POLG2
CCNL1
PLAC8
NSD3
GABRR3
ARHGEF10L
KRAS
DNAJC21
RBFOX2
C6orf132
BCAS1
PIK3C2A
RGL1
MUC3A
ARPC5
VIT
MTRNR2L9
CXADR
CLDN10
FOXN4
DGKD
MED15
KRT8
GREB1
BAZ1B
NPAS4
RHOH
TSHB
IQGAP2
CITED4
TTLL7
TRPM1
CMTR2
POLR2J3
LIFR
STS
SLC6A9
BIN1
TRA2B
MIGA1
SYNPO
SNAP23
ADHFE1
RTN4
C1GALT1
NPEPPS
IBTK
LTA4H
PTPN6
C12orf57
LSMEM1
FEM1B
EVPLL
ASPSCR1
SLC12A3
ITGB6
HPDL
SGK3
RASSF2
KRT19
RIPOR2
SLC7A2
FREM2
SNX27
BCAS3
ZBED1
RIPOR1
DHRSX
LOC389199
CBL
AFAP1
SEH1L
ACER2
SRI
TRIM17
H3-4
MYO6
DHX35
PMF1-BGLAP
PMF1
ZNF853
RGS22
CTNNAL1
SLC1A5
DUSP21
TSTD1
NBR1
POLD4
MIDEAS
SLC25A34
TACC2
KDM5C
GJA10
FGF1
SPTLC2
HOATZ
BTG4
SHANK2
ATG9B
ABCB8
PLD5
H3C15
H3C14
H2AC19
H2AC18
ASPRV1
POLR2J2
UIMC1
HAPLN1
OSBPL8
SVOPL
SLC17A5
CTNND1
ST8SIA6
FUT3
SUPT7L
SLC4A1AP
SLC25A13
SCRIB
RPS14
SLC23A2
CMC2
TRIM37
PIP4P2
KEL
BNC1
SCNN1A
LTBR
GALNT11
CLYBL
PSMD6
PELO
MTUS1
ITGA1
BANK1
FHDC1
TLK1
DEPP1
RAPGEF1
NCOA3
LHX4
ORAI3
SPAM1
APPBP2
TFF1
ZMYND8
H2BC4
H2AC6
RFLNA
HSD17B1
ANXA3
ZG16
RNASE7
CSGALNACT1
SLC38A9
NPL
GAS2L3
CLPB
IGFL4
KIFC3
RHOV
IL22RA2
HSPB3
GGCT
TMEM254
MREG
DAW1
NRAS
FGFRL1
TTR
BMP7
KCNJ15
ULK2
ANKRD2
CLPSL2
CLPSL1
TMPRSS11F
SLC25A26
CREB1
TPST2
PTPRE
DEK
TMEM41B
TENM3
GM2A
H2BC21
H2AC21
H2AC20
GRHL3
FAM53B
MPP4
CALD1
TMCC3
H4C8
GHR
CORO2A
PRSS8
EPHB2
HCAR1
H2BC11
H2AC11
MRPL38
ANKRD31
ZNF358
CAP2
ACOT2
TTC8
SMARCA2
AIG1
CSRNP2
EHHADH
CXXC5
CAMK2G
TRIM22
STX16
MBOAT2
FAP
RHPN2
OVOL2
TNFAIP8
SALL4
NANOGNB
FRYL
C12orf66
KRT18
NEDD9
STON1-GTF2A1L
PTPN3
RABGAP1L
FERMT1
TTLL4
RHEX
WIPI1
NRBP1
OR5H14
TEX14
TMC1
TGFB3
IFT43
EGFR
NIT2
EPS8
MFSD4A
CDC14B
CD164
TRIM48
ATMIN
SULF2
POLR1H
MYBBP1A
GGT6
SLC52A3
HAVCR2
DLC1
CREM
CALHM4
TNIP3
LRRC14B
ZNRF3
TMEM150A
DNMT3A
BRD4
MS4A7
NAGK
CD36
EXPH5
PAK6
PPARG
ZFPM1
CCKBR
CNNM3
IGSF5
CYB5A
CDCA4
PLEKHM2
FMN1
EPB41L3
DNAJB2
SIK3
FBRSL1
GGTLC3
MTF1
SYCE2
SLC4A8
HEXIM1
GALNT6
TFPI
PCCB
TSPAN3
TMEM94
EDARADD
FCGR1A
RHNO1
GPD1L
FOXM1
TNRC18
SMARCD2
ZNF697
PPY
HEXB
CLIC4
CHD2
APOBEC3B
SPNS3
RESF1
SLC29A1
ZNF552
CITED2
APBB1IP
TNF
LTB
CDK3
PLGRKT
DNM1L
PLEC
CD2AP
TPD52L1
MARCHF7
ALDH3B2
KLRC3
TYW3
PDE4DIP
GMFB
CRYZ
BANP
SPAG9
CSPP1
NFIL3
ARHGAP45
SHROOM3
USP44
ID2
TMC5
NR4A3
SLC39A10
LOC388282
ATXN7L1
ILF3
MRTFB
PTPRD
ELMO2
ELF3
DUSP14
DOT1L
MRAP2
GCM1
ERVW-1
CYP1B1
CD177
CCDC88C
ADGRG1
NCOA1
WWOX
KRTAP4-2
KRTAP4-1
SMIM6
METTL25
KTN1
KMT5C
CCDC59
YY1
ARHGAP40
CS
AMOTL2
AIF1L
TNFRSF12A
THOC6
HCFC1R1
PIK3R3
PICALM
SPR
RBBP7
CXCR6
MAGI1
ACE2
DCTD
ZNF76
TTC39C
TNRC6A
C1QBP
OR2B11
LACTBL1
ARHGAP35
TUBD1
TMEM185B
SERPIND1
RPS6KB1
SETD5
MEF2A
FKBP4
DENND6A
CAPN5
WIPF1
PPM1D
PLS3
NR1D2
NKIRAS1
ZNF444
SIGLEC6
NAALADL2
PHLDB3
EHBP1
TPGS1
SEPTIN9
IGF2BP3
SELENOI
PORCN
ADGRF3
TRIM45
PPFIBP2
MRS2
JCAD
GSK3B
PLCXD3
EGR1
PTGES
EPS15L1
SIRPA
LIMA1
NBN
HNRNPF
FOXJ3
TPM1
ROPN1B
INO80B
CHRNA10
ALOX5
USP32
SCAMP4
MICB
ADAT3
TMEM130
RNFT1
PARP4
KLF6
IL1F10
SDC4
CYRIB
C11orf94
BTBD3
ID1
TTYH3
G3BP2
FAM151B
TNFAIP3
SLC39A1
HERC4
H2BW1
GSTT4
FBXL3
CREB3L4
CABIN1
BAIAP2
OPRL1
LKAAEAR1
TLE3
ERGIC1
HMGCS1
SLC51A
LEPR
RB1
ARID5B
ALDH4A1
ZC3H10
RPL41
PRPH2
HK1
HEATR6
PTS
PRPS1
HES1
TREML1
CSH2
SLC35A2
ENSA
MORC4
TPD52L2
ABHD16B
RDX
PAPPA
NAA60
HOXC12
XCR1
USP3
TMCO6
MCAM
CD14
NEURL3
DIAPH3
SOWAHC
SEPTIN10
ATR
MID1
GMNN
HSF5
FAR2
EDNRB
ZBTB12
SH2D5
KLRC2
EHMT2
C2
THAP3
MACC1
CSF1R
SLC12A6
OARD1
NFYA
ATP1A1
VPS26C
RNF19A
HSPB7
H1-6
CLCNKA
SPAAR
PEX3
CDS1
ADAT2
PAPOLA
TOMM34
YJU2
RIOX1
PPP2R3A
PDCD1LG2
MAP3K8
BCR
SPRED2
KAT2B
H2AX
GRM4
C9orf131
FAM118A
C16orf46
APOL4
LPP
GOLGA8B
DGKZ
KIAA1586
H1-3
GPR82
FBXO43
KL
HDAC5
ANXA4
KANK1
ARID4A
LOC102724265
ZNF674
RHOBTB2
PLXND1
SELENOT
ANK3
PIK3C2G
HID1
SVOP
IL36G
GSTP1
TMEM205
RAB3D
RAB31
CCDC159
AFF1
TRPV2
NFYB
FAM107B
CANT1
ANXA6
UBALD2
H2BC15
H2AC15
TFDP2
SLC2A3
RTKN
METTL27
HSPA4
GNLY
BATF
ATG14
TPRN
NEBL
ABCA4
TIAM2
C1orf74
RHOBTB1
PTPN14
RTN2
IGFL2
TBC1D12
PGAP1
CDK7
NUP153
SLC9A8
H4C5
ZBTB4
SLC35G6
POLR2A
MAZ
NLRP7
CFAP92
AAK1
SYTL5
GNG10
ZBTB7C
TRMT12
TRIM16L
PDIK1L
NFX1
SZT2
PLEKHG2
MED8
H3C13
H2BC18
DHX40
CYBRD1
SOX7
PRSS41
LATS1
HTR5A
GRAMD1B
PRAG1
JADE1
S100A16
PARP8
EIF2D
DENR
ANKRD33B
RGS8
NXNL2
ADAP1
TOP1MT
OR8S1
ITGAL
EMC2
SULT1A4
SULT1A3
BOLA2-SMG1P6
BOLA2
USP43
ING2
FBXO34
DNASE1L3
CYB5R1
SCAMP2
SASH1
KBTBD6
TMEM30A
LGALS8
SPAST
PSG6
PPEF1
CYS1
CATSPERG
BRI3
AP5B1
AHCYL1
SMYD3
RIMKLB
LIMK2
NSFL1C
NAA38
TSKS
AP2A1
AKTIP
SEPSECS
CLDN4
USP36
NRK
LIMS2
HSPB2
CRYAB
COL7A1
PGC
KDM2B
GPR171
VNN2
SLC11A2
RNF111
MPO
FBXW11
ENPP1
GEMIN6
SCARA3
UBXN2B
SREK1
LAPTM4B
IGFL1
CLMP
ARFGEF2
RABEP1
PRKAG2
ISM2
LRPPRC
SPINK4
IRAK2
EPO
YPEL5
RARA
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MYORG
H2AC16
H1-5
FURIN
TRIP4
ZNF331
TOGARAM2
SIGLEC15
OR52K1
ADAM22
ADRB3
RUBCNL
MKRN2OS
STAP2
SPATA9
RHOBTB3
MPND
DTWD2
ARHGDIB
ZNF335
SPINK1
SPECC1L
PRUNE1
MINDY1
ZNF83
TNFSF8
NXF1
ZMYND11
TUSC1
SETD3
SEPTIN3
SCRN2
PLA2G2E
MSANTD3-TMEFF1
KLF7
IL23R
GNA12
UTP18
PLAGL1
MBTD1
IER3
FLOT1
WDR87
SPTSSB
SIPA1L3
LZTS3
AMZ1
PRDX3
PNPLA8
OSBPL9
NAPEPLD
ARPIN-AP3S2
ARPIN
TAS2R60
ZBED9
MMP19
SPOP
RPF1
RFWD3
RANBP2
SOCS2
PLD1
DNASE1
TEX101
SGK1
PLS1
ADIPOR1
SH3KBP1
ITGB3