ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478468 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◣ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

FRG2C
WDR74
DUX4
SIRT4
FRG2
CCDC200
H2BC5
H1-4
MTRNR2L1
BCAS4
APPBP2
PFDN4
H1-2
POLG2
PSMD6
RGS22
PTPN6
C12orf57
TXNRD1
SCRIB
TRIM37
H2BC11
H2AC11
FKBP4
NRAS
H4C8
WDR93
PEX11A
H3C15
H3C14
H2AC19
H2AC18
H2BC4
H2AC6
BCAS3
STX16
COL23A1
NPAS4
NPEPPS
TPD52L1
CHD2
TUBD1
RPS6KB1
H2BC21
H2AC21
H2AC20
SGK3
PPM1D
GREB1
NCOA3
POLR2J3
PARD6B
H4C5
TMEM107
CLTC
USP32
CALM1
ARFGEF2
H3C13
H2BC18
RBL2
VPS26C
BRIP1
TEX14
TNFRSF12A
THOC6
HCFC1R1
OPRL1
LKAAEAR1
PRUNE1
MINDY1
RAD51C
RNFT1
MAZ
SIX2
DHX40
EIF2D
ENTPD5
BBOF1
TRMT12
ZMYND8
AGR3
TPM1
FBP1
SLC45A4
AKAP1
SMARCD2
H4C7
H3C7
H2BC9
GSTP1
RARA
H2AX
SPATC1L
ABCA5
HTR5A
MAN2C1
EIF1
AMZ2
SLC25A24
HEXIM1
RBBP5
CAP2
SNX16
LLGL2
ID2
H3-3B
SCAMP3
H4C14
H4C15
FAM53C
CDC25C
TTLL3
C1QTNF6
EHMT1
ARL6IP1
CSDE1
BMP7
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CDH18
RAE1
VEZF1
ISG20
IMPDH2
BCAS1
INTS2
HIPK1
C6orf226
PLEKHG2
ZFP36
SYCE2
STAP2
MPND
STMN3
RTEL1
HNRNPH1
PTPN1
TEX22
MRPS23
NOL11
EXOSC6
WBP1L
CELSR2
SPTSSB
JUNB
RPL12
LRSAM1
THAP5
DNAJB9
FAM227B
DTWD1
TRIM33
ABCA3
POLD1
PIK3R3
MICU2
COIL
ATXN7
CD55
SPAAR
SNAPC5
ZNF217
LMAN1L
NPIPB9
ARID4A
H2AC16
H1-5
TFF1
SETD5
PDXDC1
RNF114
SLC44A1
DCLRE1B
AP4B1
H4-16
H2AJ
ATP5F1E
SCGB1C2
SCGB1C1
NSG2
EPN1
SRSF7
BCAS2
POLDIP3
ARNT
MPV17
CPLX2
FIS1
SLC16A6
NELFCD
ELAVL3
ARSG
AKAP8
ZFAT
PRKAR1A
HEXA
FUT11
FBRS
ATP6AP2
USP8
FAM72D
FAM72C
COQ7
H1-3
IRF9
TUFT1
RERG
PBX3
EBAG9
TRMO
PRMT6
FAM43A
CYB561
SLC25A19
KMT5B
DPY19L3
CRBN
NXF1
SRSF5
RPLP0
PA2G4
TMEM223
TMEM179B
FAM133B
ZC3H10
RPL41
MDP1
CHMP4A
UBQLN1
USP42
ULK3
MAP3K3
ESR1
FUT8
GTF2A1
ADNP
MYL6
GID8
DIDO1
PDE4DIP
TIPARP
ZC3H14
PIK3C2B
UTP18
MBTD1
TRIM44
GNG3
CYTH2
BSCL2
EGR1
POR
ARIH1
WDR6
PRMT2
BANP
SENP8
P4HA1
MYO9A
METTL2A
LINGO1
FOS
MTHFS
YJU2
FAM220A
TRIM25
DPM2
DMRT2
PRKRIP1
ID1
TDRKH
TRIP4
ARAP1
DENND2C
C1orf56
MEMO1
SLC24A1
C3orf14
ZER1
STRADA
VCPKMT
KLHL12
ZC3H6
NUCKS1
ADPGK
NOTCH2
TBX2
HBQ1
HBA1
SVIL
RNF130
L3HYPDH
JKAMP
NBN
SLC44A2
DHPS
ST20-MTHFS
PPIC
ESYT2
H2BC12
H2AC12
CSKMT
C11orf98
IER2
DSTN
BFSP1
NBPF15
MVK
STX10
GALK1
EDC4
TDRD7
LRRC37A3
HIGD2B
ERAP1
BBS4
C16orf74
SH2B1
TOMM40
TACO1
KRTCAP3
H4C4
LYRM1
DCUN1D3
PPP6R3
PHC3
TP53BP2
PSMB4
NDUFS3
KBTBD4
TPD52L2
ABHD16B
DYRK1B
DRG2
KMT2E
DGKZ
ERCC6L2
SLC2A4RG
LRCH3
LIME1
PSMC5
FTSJ3
PCTP
CDK11B
CDK11A
TOB1
METTL25
CCDC59
XKR7
MRPS28
BRMS1L
THOC3
PPP1R3D
FAM217B
BCAR1
SMG8
OTUD7B
MAP4K5
KRT15
ATL1
UBC
ZNF43
ALDOA
SLC35C2
STX6
PRMT5
FBXW9
COMMD4
RBM48
PEX1
MRPL21
IGHMBP2
NME1
ULK1
MDM4
KLHL20
SEMA4B
NR4A3
MAN1B1
C12orf66
CYP1B1
MEF2A
DOLPP1
ZCWPW1
MEPCE
RCCD1
STAT1
TMEM186
PMM2
DPY19L4
CACYBP
CUL7
PFKFB3
RPS9
MAPK1IP1L
NPIPB6
CNBP
IER5
LEKR1
GLDN
IDI1
ROGDI
LMAN2
C2orf42
PAIP2
GSK3B
MAPK6
DDX59
ZSCAN5A
TMOD3
RNF7
DSTYK
PEX2
SSR3
CYB561D1
RIPK1
MPPE1
PSMG1
CYP51A1
PPM1E
LPIN3
AFF1
UGDH
EIF4A3
MRPL53
TAF9
RAD17
MSL2
MED13
AK6
YWHAZ
TMEM191B
CLPB
H4C11
UMPS
TSEN54
CASKIN2
LRRC46
IQSEC3
UQCRC2
ZNF768
UBFD1
EARS2
NAPEPLD
SEC13
PTP4A1
WDR4
SYT1
PSG5
PSG9
ARHGAP5
PLA2G4D
PSG1
MAMDC2
MTRNR2L8
PSG11
SLC5A10
SEC22B
EXOSC2
WWP1
RNF43
NIPSNAP1
AP3D1
PSG7
HSD17B4
MTRNR2L2
MSH3
DHFR
ADAM17
PSG8
PSG3
YTHDF1
CCDC141
RAB17
ZDHHC1
TMEM52B
ITGAM
PPP1R14D
SLBP
MTDH
LRP2
ANKRD23
PSG4
BCL2L13
ATP6V1E1
CRPPA
GTPBP4
FAM110A
ATP2B1
DPEP2
IFNAR1
KRTAP2-1
PIWIL3
RABGGTB
TMTC2
MIS12
DERL2
SLC10A6
KRTAP3-1
ENTPD1
NAGLU
CDH1
PATJ
PSPN
C18orf21
SLCO2A1
ANKRD40CL
GSTO1
ADGRG3
RYK
ENPEP
COLEC12
FRY
DNAJC15
PKIB
RASA2
BACE1
PHLDB2
GEMIN2
AMN1
ANKRD1
SEMA6A
CCDC81
COMMD8
CDK19
AMD1
ABLIM1
SLC7A6
MEST
SFXN5
LNX1
RARS1
PXMP4
ARHGEF18
SLC19A3
LIMS4
OSBP
UBE2J1
FDFT1
SH3BP4
EHF
EFNA1
HECTD1
PRKCZ
DLG2
LIMS1
SH3YL1
ACP1
IL1R1
FAM89A
SYBU
OLFML1
TSPAN10
NPLOC4
OR10V1
EID2
SLC7A7
ID3
TRMT9B
FGD3
NTAN1
SLC18A1
ZNF474
TRPM6
SH2D4A
VPS37C
ZNF175
TMEM88B
ANKRD65
ZNF749
PTTG1IP
TTC23L
CTPS1
TAF6
CNPY4
ZNF592
TMEM245
PSG2
TMEM212
CHST6
CCR5
ZNF503
SLC15A2
ZNF343
PACSIN2
LSM14A
NIBAN2
ZNF407
SAA1
ACVR1
ITGA2
IKZF3
ACER3
TACC1
LDLR
HMOX1
CLCN4
GLB1
LETMD1
DECR2
KIT
KRT71
IL34
USP6NL
NKX2-3
KLHL5
CXCL2
BABAM1
NR4A1
PLAAT5
STARD8
BAHCC1
ZNF367
GSTA4
PKP2
RGPD2
RGPD1
LGR5
C6orf163
OLR1
TET1
ERP27
CALML5
SIX1
ZNF398
SLC20A2
P2RX6
CROCC2
LHX8
POU5F1
INSL4
SETD4
MARVELD3
ZNF641
RALBP1
RBM15
HACD2
SLC7A9
FBL
ATP13A2
MGARP
ADGRF4
TMPPE
SAMD7
CCNL1
PLAC8
NSD3
GABRR3
ARHGEF10L
KRAS
DNAJC21
RBFOX2
C6orf132
PIK3C2A
RGL1
MUC3A
ARPC5
VIT
MTRNR2L9
CXADR
CLDN10
FOXN4
DGKD
MED15
KRT8
BAZ1B
RHOH
TSHB
IQGAP2
CITED4
TTLL7
TRPM1
CMTR2
LIFR
STS
SLC6A9
BIN1
TRA2B
MIGA1
SYNPO
SNAP23
ADHFE1
RTN4
C1GALT1
IBTK
LTA4H
LSMEM1
FEM1B
EVPLL
ASPSCR1
SLC12A3
ITGB6
HPDL
RASSF2
KRT19
RIPOR2
SLC7A2
FREM2
SNX27
ZBED1
RIPOR1
DHRSX
LOC389199
CBL
AFAP1
SEH1L
ACER2
SRI
TRIM17
H3-4
MYO6
DHX35
PMF1-BGLAP
PMF1
ZNF853
CTNNAL1
SLC1A5
DUSP21
TSTD1
NBR1
POLD4
MIDEAS
SLC25A34
TACC2
KDM5C
GJA10
FGF1
SPTLC2
HOATZ
BTG4
SHANK2
ATG9B
ABCB8
PLD5
ASPRV1
POLR2J2
UIMC1
HAPLN1
OSBPL8
SVOPL
SLC17A5
CTNND1
ST8SIA6
FUT3
SUPT7L
SLC4A1AP
SLC25A13
RPS14
SLC23A2
CMC2
PIP4P2
KEL
BNC1
SCNN1A
LTBR
GALNT11
CLYBL
PELO
MTUS1
ITGA1
BANK1
FHDC1
TLK1
DEPP1
RAPGEF1
LHX4
ORAI3
SPAM1
RFLNA
HSD17B1
ANXA3
ZG16
RNASE7
CSGALNACT1
SLC38A9
NPL
GAS2L3
IGFL4
KIFC3
RHOV
IL22RA2
HSPB3
GGCT
TMEM254
MREG
DAW1
FGFRL1
TTR
KCNJ15
ULK2
ANKRD2
CLPSL2
CLPSL1
TMPRSS11F
SLC25A26
CREB1
TPST2
PTPRE
DEK
TMEM41B
TENM3
GM2A
GRHL3
FAM53B
MPP4
CALD1
TMCC3
GHR
CORO2A
PRSS8
EPHB2
HCAR1
MRPL38
ANKRD31
ZNF358
ACOT2
TTC8
SMARCA2
AIG1
CSRNP2
EHHADH
CXXC5
CAMK2G
TRIM22
MBOAT2
FAP
RHPN2
OVOL2
TNFAIP8
SALL4
NANOGNB
FRYL
KRT18
NEDD9
STON1-GTF2A1L
PTPN3
RABGAP1L
FERMT1
TTLL4
RHEX
WIPI1
NRBP1
OR5H14
TMC1
TGFB3
IFT43
EGFR
NIT2
EPS8
MFSD4A
CDC14B
CD164
TRIM48
ATMIN
SULF2
POLR1H
MYBBP1A
GGT6
SLC52A3
HAVCR2
DLC1
CREM
CALHM4
TNIP3
LRRC14B
ZNRF3
TMEM150A
DNMT3A
BRD4
MS4A7
NAGK
CD36
EXPH5
PAK6
PPARG
ZFPM1
CCKBR
CNNM3
IGSF5
CYB5A
CDCA4
PLEKHM2
FMN1
EPB41L3
DNAJB2
SIK3
FBRSL1
GGTLC3
MTF1
SLC4A8
GALNT6
TFPI
PCCB
TSPAN3
TMEM94
EDARADD
FCGR1A
RHNO1
GPD1L
FOXM1
TNRC18
ZNF697
PPY
HEXB
CLIC4
APOBEC3B
SPNS3
RESF1
SLC29A1
ZNF552
CITED2
APBB1IP
TNF
LTB
CDK3
PLGRKT
DNM1L
PLEC
CD2AP
MARCHF7
ALDH3B2
KLRC3
TYW3
GMFB
CRYZ
SPAG9
CSPP1
NFIL3
ARHGAP45
SHROOM3
USP44
TMC5
SLC39A10
LOC388282
ATXN7L1
ILF3
MRTFB
PTPRD
ELMO2
ELF3
DUSP14
DOT1L
MRAP2
GCM1
ERVW-1
CD177
CCDC88C
ADGRG1
NCOA1
WWOX
KRTAP4-2
KRTAP4-1
SMIM6
KTN1
KMT5C
YY1
ARHGAP40
CS
AMOTL2
AIF1L
PICALM
SPR
RBBP7
CXCR6
MAGI1
ACE2
DCTD
ZNF76
TTC39C
TNRC6A
C1QBP
OR2B11
LACTBL1
ARHGAP35
TMEM185B
SERPIND1
DENND6A
CAPN5
WIPF1
PLS3
NR1D2
NKIRAS1
ZNF444
SIGLEC6
NAALADL2
PHLDB3
EHBP1
TPGS1
SEPTIN9
IGF2BP3
SELENOI
PORCN
ADGRF3
TRIM45
PPFIBP2
MRS2
JCAD
PLCXD3
PTGES