ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478469 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◣ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
DUX4
FRG2C
SIRT4
FOXN4
BCAS1
MTRNR2L1
TXNRD1
SIX2
SLC7A2
MFSD4A
POLR2J2
CD36
GREB1
POLR2J3
TSPAN3
NPAS4
SLBP
NPEPPS
POLG2
BMP7
TMEM107
RBL2
TRA2B
BCAS4
CCDC200
H2BC5
H1-4
SRI
HES1
ADGRF4
PTPN6
C12orf57
NCOA3
FOS
BAHCC1
TMEM205
RAB3D
CCDC159
FRG2
H3C15
H3C14
H2AC19
H2AC18
HSPA4
EDARADD
WDR93
PEX11A
PFDN4
PSG5
SGK3
C1QTNF6
RGS22
SCRIB
H2BC4
H2AC6
RUBCNL
ATP6AP2
SPINK1
ID2
SMIM6
SLC51A
PLAGL1
IER3
FLOT1
EGR1
SETD5
ID1
ZNF337
GSTA4
PSMD6
ZC3H10
RPL41
NRAS
USP3
SLC45A4
BCAS3
TRIM37
PARP2
STX16
H1-3
COL23A1
MRPL30
MITD1
GMNN
VPS37C
TMEM94
HDGFL3
H2BC11
H2AC11
FOXJ3
ARID4A
ARNTL
SMYD3
BANP
TNFRSF12A
THOC6
HCFC1R1
SLC25A25
NAIF1
CD55
CAPN13
PSG9
CHD2
ZNF331
INSM2
MACC1
H1-2
SMARCD2
HEXIM1
PRSS41
QSOX1
GTPBP4
GTSF1L
PPP6R3
APPBP2
TACC1
ARHGEF6
MIDEAS
PLEKHG2
RBBP8NL
KMT2E
RNFT1
CAP2
RP1
YWHAZ
ZMYND8
ARPIN-AP3S2
ARPIN
OARD1
NFYA
H2AC16
H1-5
RUVBL1
BMPR1B
OPRL1
LKAAEAR1
SFXN2
ARL3
RHCG
AKR1E2
GSTP1
FURIN
JPT1
C2CD4D
CLTC
RASEF
KLK11
KLK10
KCNJ15
FAM214A
H2BC21
H2AC21
H2AC20
GRHL2
TRIB1
P4HB
ZNF76
USP32
HTR5A
RFESD
LSMEM1
TRIQK
H4C8
LAPTM4B
PPM1D
NFX1
FBXL18
STAP2
MPND
SPTSSB
TUBD1
RPS6KB1
MACROH2A1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
KIAA1217
METTL25
CCDC59
KL
POLDIP3
IER2
MPP7
IL1R1
POLR1H
BIRC5
ID3
BRIP1
KIAA0319
TFF1
POLD1
NAALADL2
VPS26C
PRKAG2
CYP3A43
IGSF5
ENSA
TPD52L2
ABHD16B
PPP4R3A
FREM2
DUSP14
EPB41L4B
KRTAP3-1
SRSF5
RPEL1
TRMT12
ZFP36
ERP27
CERK
ESR1
CUL7
SNAPC5
USP42
IER5
SPATA2
RAD23A
C1QTNF9
USP36
PTPRE
VEGFC
SERPINA3
FAM160B1
TMPRSS4
PALLD
MICOS10-NBL1
MICOS10
CREM
EIF2D
ERVW-1
MAZ
RARA
PFKFB3
SULF1
SPRR2F
CDS1
ZBTB4
SLC35G6
POLR2A
DHX40
ALDH3B2
JUNB
ZNF217
XKR7
SKA2
PRR11
POLR3E
NAA60
C3orf14
PPP1R10
PLEKHH2
MRPS18B
SLC25A24
TIPARP
MRPS28
ZHX2
SLC37A4
FANK1
ROPN1B
ARNT
DNAJC16
CASP9
CHST6
H2BC15
H2AC15
ARAP1
IFNGR1
PIK3R3
TTC6
FOXA1
SULF2
SEPTIN9
NXF1
PPIA
ARHGEF18
APOL4
ZBTB7C
STMN3
RTEL1
TAGLN2
RHOV
TBL1X
DGAT1
C10orf67
GTF2A1
CBWD5
CBWD3
CS
LYRM1
DCUN1D3
MPDU1
LOC100996842
CD68
MIS12
DERL2
CLDN10
PNMA1
ANP32E
IL22RA2
ZC3H6
TFRC
SSTR5
PTPRR
GPD1L
NXNL2
HSFX4
ITPRID1
EOLA1
ISG20
PIK3C2G
MUC3A
ZBED1
DHRSX
SRSF7
EPPK1
ACOT2
ATG14
POR
RNF223
NQO1
CLYBL
PAPOLA
H4C14
LOC102723996
ICOSLG
PHLDA1
TMEM217
TBC1D22B
SLC25A51
GPBP1
ESYT3
DCLK2
CSNK1A1
SPAAR
HDAC11
EDDM3A
CCDC138
H3C13
H2BC18
DSTN
BFSP1
FAM161B
COQ6
CSKMT
C11orf98
RNF170
HOOK3
TM4SF19
HOPX
AP3D1
PPP5D1
CALM3
DCLRE1B
AP4B1
CSTF1
AURKA
UFL1
MYOG
CYB561
CALM2
CIB3
RPS9
PRICKLE2
LNX1
H3-3B
RBM48
PEX1
CALML5
C16orf74
TPD52
RAB11B
LRRFIP2
H4C5
VASN
ANKRD35
CYB5R4
FKBP4
INTS2
ADI1
PPP1R14C
CUL9
SYCE2
LGALS8
ELAC1
OSBPL8
ARL6IP1
RELT
MLLT11
CDC42SE1
C2CD2
MS4A7
U2SURP
AADAC
FAM53B
SDC4
H4C7
H3C7
H2BC9
SEMA5B
CSRNP2
PRUNE1
MINDY1
MNT
CNOT8
B3GNT6
ARMC1
ZNF398
MTUS1
RHOBTB2
BCAS2
TNFSF15
FARP2
LSM14A
FAM53C
CDC25C
RTF2
ZNF367
TLE3
IRF9
TDRKH
STAT6
IVNS1ABP
DNPEP
C11orf80
FGF1
DDX59
SRCAP
MTHFD1L
LSM10
LOC730183
SALL4
TMBIM6
HES4
SLC35A3
SPO11
SVIL
CBWD6
POLR2J
TPD52L1
ARFGEF2
ARIH1
ZNF33A
PSMB10
FAM24A
CTRL
SERPIND1
RHOD
HSPB1
FAM227B
DTWD1
STX1A
GNE
FHL1
KLF6
RERG
MYC
INTS1
COX16
MDP1
CHMP4A
MGLL
CSGALNACT1
LIMA1
PSMC5
FTSJ3
ZNF34
RPL8
RBM3
OBP2A
LGMN
CHD4
TEX14
TGFB3
IFT43
RAD51C
H2BC12
H2AC12
RPLP0
HSPA1B
WNT1
HOXA3
H2BC8
H2AC8
PRKRIP1
NBN
ZNF609
ZFHX2
THTPA
THEM4
WWOX
P2RX7
DOLPP1
HSF1
BOP1
SPIRE2
ZFAND6
PCK2
NRL
MTA3
LY6D
KCNG3
HNRNPA2B1
CBX3
DLG2
H2AX
GTF2H2
TMEM126B
LRRC6
DBR1
ATP1A1
SLC34A3
RNF224
CYSRT1
ST3GAL4
KYNU
HEXIM2
COPS7A
MYO6
DGKZ
CLDN4
TRIM7
MINDY4B
TMTC2
USP15
BARHL1
EPO
CATSPER3
IMPDH2
S100P
LAPTM4A
CEP63
ANAPC13
ADCY5
DENND2C
ZNF425
MYLIP
ARSD
ANKRD36
SMG8
PLK2
CCNT1
EIF1
TUFT1
DHPS
AHCY
TSGA10
SLC22A5
SECISBP2
NOTCH3
C2orf15
NIPSNAP1
PKIG
TUBA1C
TLCD2
SLC25A43
PIP5KL1
BRMS1
B4GAT1
ACTRT3
TMEM126A
SAR1B
HBP1
VEZF1
C19orf33
TTLL6
PYGO2
LOC101928120
FAM131A
MRPS23
ATG9B
ABCB8
RCAN3
FUS
TNPO1
KPTN
DMXL1
KLRC2
MYL6
VPS45
TFAP2C
SCFD1
CLBA1
ATP2B1
FBXO43
RXRA
CPPED1
FAM220A
UBC
MRPL21
IGHMBP2
SCAMP3
GLTP
HNRNPH1
H4C11
CPLX2
PA2G4
KIF26A
AARS2
TOMM40
SGF29
NADK
KRT8
TRIP4
RAB11A
KLF10
EIF2AK2
KRT18
CALHM4
TNRC18
CYRIB
PLD1
MAN2C1
HIPK1
ANKRD36C
METTL2A
ZNF3
PPP2R5E
PMEPA1
PTP4A1
RPL38
CHD1
AKAP8
RPS20
RABGAP1
ELP5
DDX5
CTDNEP1
CEP95
UTP18
MBTD1
PRRT1B
EIF2AK3
CCNL1
TACO1
RPTN
NR4A2
CLIP4
IDI1
NDUFC2-KCTD14
NDUFC2
FN3K
CHCHD5
ATP2A3
UBE2B
CDKL3
PDCD4
FZD1
CCDC174
ASB2
RNF43
H4-16
H2AJ
ZCWPW1
MEPCE
COMT
SPATC1L
RBBP5
CSDE1
RCCD1
GTF2H2C_2
GTF2H2C
FCF1
AREL1
LEKR1
EBAG9
DAPK3
EDC4
DSTYK
CYP51A1
SFT2D3
PEDS1-UBE2V1
PEDS1
MTMR11
H4C15
RNF130
PPP2R5C
DHRS7B
MEF2A
TTLL3
CASP7
YJU2
PSMG1
RPL10
NANP
IP6K3
GDPGP1
CIB1
NME1
MAPK1IP1L
SSC5D
PDE8A
NAT14
CLDN9
STRADA
ZNHIT2
ZNF225
USPL1
SLC50A1
RCOR1
PDCL3
MRPL49
HMGB1
FAU
DPM3
TBX2
CYB561D1
ZFP1
TPCN1
MIS18BP1
MEMO1
SLC37A3
IRF2BPL
EIF3E
DDX42
CCDC47
GTF2H4
C16orf95
AFF1
PSMD12
CLK3
HOMER1
PHC3
TPK1
TIMMDC1
SREK1
FAM43A
SIDT1
FANCI
KRT13
TEDC1
CRIP1
PAIP2
NAT10
GABPB2
CDC25B
CCN1
RNF32
GBE1
CHRM4
MTMR4
GFM1
MFSD14C
SCGB1C2
SCGB1C1
AMZ2
WDHD1
TM9SF4
SOCS4
CRELD1
CLUAP1
C16orf90
EPS8
ZFAT
ZKSCAN2
VPS54
ISY1-RAB43
ISY1
KAT5
CRNKL1
CFAP61
NOL11
TSPAN15
SSBP1
NFYC
STK11IP
SNX17
SERTAD1
EIF2B4
CTBP2
NBPF15
TMSB4X
IPO4
ECI1
TDRD5
OSCAR
NDUFA3
MRPS7
GGA3
DNAJC25-GNG10
DNAJC25
PLEC
BOD1L1
GPRC5A
SRA1
WDR4
RPP21
EED
TRIM45
RPS29
CLPB
MAPK6
RNF103-CHMP3
RMND5A
ACYP2
TTC5
GPSM3
HEATR6
NOP16
HIGD2A
FAM136A
UNC13D
TNFAIP1
IFT20
STAT1
USP2
ADPGK
YTHDF2
EMC2
SNAI2
MAVS
DUS2
DDX28
ILF2
CPE
FBXO34
PDE7A
ARHGAP5
PLA2G4D
PSG1
MAMDC2
MTRNR2L8
PSG11
SLC5A10
SEC22B
EXOSC2
WWP1
PSG7
HSD17B4
MTRNR2L2
MSH3
DHFR
ADAM17
PSG8
PSG3
YTHDF1
CCDC141
RAB17
ZDHHC1
TMEM52B
ITGAM
PPP1R14D
MTDH
LRP2
ANKRD23
PSG4
BCL2L13
ATP6V1E1
CRPPA
FAM110A
DPEP2
IFNAR1
KRTAP2-1
PIWIL3
RABGGTB
SLC10A6
ENTPD1
NAGLU
CDH1
PATJ
PSPN
C18orf21
SLCO2A1
ANKRD40CL
GSTO1
ADGRG3
RYK
ENPEP
COLEC12
FRY
DNAJC15
PKIB
RASA2
BACE1
PHLDB2
GEMIN2
AMN1
ANKRD1
SEMA6A
CCDC81
COMMD8
CDK19
AMD1
ABLIM1
SLC7A6
MEST
SFXN5
RARS1
PXMP4
SLC19A3
LIMS4
OSBP
UBE2J1
FDFT1
SH3BP4
EHF
EFNA1
HECTD1
PRKCZ
LIMS1
SH3YL1
ACP1
FAM89A
SYBU
OLFML1
TSPAN10
NPLOC4
OR10V1
EID2
SLC7A7
TRMT9B
FGD3
NTAN1
SLC18A1
ZNF474
TRPM6
SH2D4A
ZNF175
TMEM88B
ANKRD65
PTPN1
ZNF749
PTTG1IP
TTC23L
CTPS1
TAF6
CNPY4
ZNF592
TMEM245
PSG2
TMEM212
CCR5
ZNF503
SLC15A2
ZNF343
PACSIN2
NIBAN2
ZNF407
SAA1
ACVR1
ITGA2
IKZF3
ACER3
LDLR
SLC44A1
HMOX1
CLCN4
GLB1
LETMD1
DECR2
KIT
KRT71
IL34
USP6NL
NKX2-3
KLHL5
CXCL2
BABAM1
NR4A1
PLAAT5
STARD8
PKP2
RGPD2
RGPD1
LGR5
C6orf163
OLR1
TET1
SIX1
SLC20A2
WBP1L
P2RX6
CROCC2
LHX8
POU5F1
INSL4
SETD4
MARVELD3
ZNF641
RALBP1
RBM15
HACD2
SLC7A9
FBL
ATP13A2
MGARP
BCAR1
TMPPE
SAMD7
PLAC8
NSD3
GABRR3
ARHGEF10L
KRAS
DNAJC21
RBFOX2
C6orf132
PIK3C2A
RGL1
ARPC5