ChIP-Atlas: Target genes

Potential target genes for SMAD9

Query protein: SMAD9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10475368 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SMAD9's Target genes

◢ SMAD9: Average

◢ SRX10475367: Hep G2

◣ SRX10475368: Hep G2

◢ SMAD9: STRING

NPAS4
XKR7
INSM2
IQSEC3
MTRNR2L1
FRG2C
LIN28A
DUX4
WDR74
MTRNR2L2
MSH3
DHFR
FAM24A
NKX1-1
CELSR3
HTR5A
KCNH7
FRG2
MTRNR2L8
L1CAM
GLRA1
RAB37
RANBP3
CCDC200
CHGB
MUC3A
EPHA10
SMIM17
CPLX2
SNAP25
BARHL1
LEMD3
DLGAP3
SLC7A6OS
PRMT7
PIK3R3
RTBDN
KDM3A
GDAP1L1
KATNA1
MAPK8IP2
OPRL1
LKAAEAR1
ODC1
KCNK12
SLC39A3
TRIM44
HDAC2
GCFC2
SAYSD1
RNF130
SLC12A5
RFC1
NOC3L
E2F6
AATF
SNRPB2
H4C12
CTDSPL
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SIGLEC10
COL23A1
MMP24
SST
CDIP1
EVI5
VRK2
STK25
PTPRS
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SNX16
HES3
MYT1
MTHFD2
MED31
C17orf100
N6AMT1
UNC80
CDK5RAP3
HBQ1
HBA1
AIP
KAT5
SPOP
NDUFS3
KBTBD4
LHFPL5
CHRM4
DHDDS
WDR36
SLBP
KLF11
CCDC92B
RBM28
PMVK
ABCA3
TMEM106B
CEMIP
IPMK
CISD1
MSL2
ANK1
DIABLO
FAM227B
DTWD1
SCGN
NME6
CEP295
CYB5R4
STAT3
MTF2
LARP1
NDUFAF5
ESF1
TBC1D13
MARCHF4
CPQ
ANKRD36
FMNL3
RNF103-CHMP3
RMND5A
LINGO1
HMGA1
HECTD1
TK2
CKLF-CMTM1
CKLF
UTP11
ESAM
MLH3
TOMM34
DHRS4L2
MLXIP
LRIF1
TCFL5
ANKRD36C
TRIP4
LACC1
CCDC122
VWC2L
MRPL44
UTS2R
VPS29
RAD9B
TUBA1B
PNPT1
NSUN5
SLC25A21
CERS6
LTV1
MED23
STMN3
RTEL1
OGFOD3
HEXD
CCDC83
PCNA
XRN2
THUMPD2
VGF
ZFYVE27
EFCAB13
USP40
USP14
LCLAT1
FANCL
DLL3
ZMYND10
NPRL2
CYB561D2
GPR158
TIGD1
EIF4E2
H3-3B
MRPL3
HINFP
PRRT2
MAZ
PIGF
CRIPT
TRMT11
UBE2Q1
TBCB
RNASEH1
POLR2I
OVOL3
HES6
AP3S1
STX16
TASOR
H4C11
SCFD1
TSEN54
CASKIN2
PLEKHM3
SNRPB
HEATR5A
RBM12
CPNE1
PEDS1-UBE2V1
PEDS1
HPCA
CDK5RAP1
CNTRL
C5
ANKRD36B
SLC25A10
TASOR2
PSMA1
PDE3B
OR2T1
TBC1D19
HHATL
PHF3
SNTG1
NPPB
NTSR2
MRPL39
MFF
C15orf61
NBEAL1
SRSF6
RPS6
TAF10
PDE6D
COPS7B
CC2D1A
C19orf57
OGDHL
TM9SF1
MIA2
RPL37A
MRPL19
RRP1B
HSF2BP
PMS2
AIMP2
METTL15
KIF18A
RPL31
TUBGCP3
PALB2
DCTN5
HDAC4
CNPY3
DHX40
USP37
CNOT9
LAMTOR5
RBL1
PTDSS1
MTERF3
GEMIN2
SEC23A
PDE7A
SRP19
CRH
DTD2
DCLRE1C
ZNF780B
EPM2A
ZNF843
TTI1
RPRD1B
POLR2J3
GRM1
RAD50
SMAD2
DCP1B
CDKN2C
PGRMC2
RANBP2
PIK3IP1
PRKDC
MCM4
NBPF1
MRPL17
ZC3H15
USP30
SVOP
CPPED1
COA1
DDX1
ATP5F1E
POLR3E
KIF27
POLE4
MARCHF7
NADK2
AHR
DPY19L4
TMEM186
PMM2
ZNFX1
SLC39A1
CREB3L4
C5orf51
EBAG9
TDRKH
NOP56
SLC31A1
FKBP15
ISM1
LOC112694756
DHRS4L1
C14orf93
SLC36A4
FAM98B
FUS
SCLT1
RIOK2
C4orf33
THUMPD3
NAT10
CFDP1
PCF11
C5orf24
HBS1L
TRIL
CMC1
ASNSD1
ASDURF
FAAP20
SCAPER
MRPL21
IGHMBP2
PROCR
NAV2
C7orf25
H1-2
COCH
WDR89
TPR
ODR4
EIF2S2
CMTR2
C10orf88
MORN2
DHX57
RPIA
ARL14EP
PDHB
NOB1
SPAG4
H4C14
EMC2
HEXA
RSPH3
RBM7
C11orf71
PSMD14
ZNF248
UBE2D3
METTL3
CISD2
TRDMT1
TMEM268
GALK2
FN1
CEP162
SULT6B1
MXD1
H4C2
H3C2
NUP54
H2AC4
BUD13
NXF1
LRP2BP
ANKRD37
GCA
PSMD3
LDHA
ZC3H6
NOL7
NOL10
RAD9A
DCPS
PSME3
ASCC1
ANAPC16
ZNF280D
MSRB3
HIRIP3
FBXO8
FAM187A
EFTUD2
CEP44
CCDC103
RAE1
CRBN
FANCD2
H4C3
H1-6
GPN1
CCDC121
STT3B
COG7
POLG2
RBM45
PDE11A
PBX3
FAM98A
MMADHC
TMX3
CCDC102B
DNAJC10
TBC1D9
DDX18
CKAP5
NCOA3
ZNF443
PRR3
GNL1
TRAPPC6B
PNN
NR1H3
H2AZ2
ACP2
IPO4
TAMM41
MTMR2
OXA1L
TANK
UBA5
MTX2
ACAD11
ATOH7
ABCB6
PDRG1
UBR2
MRM3
GLOD4
RILPL1
ESCO1
TGFBRAP1
RPS27A
CLHC1
TOB1
CCDC90B
CHID1
IMMP1L
ELP4
YAE1
KCNB1
DNTTIP2
TMEM68
TGS1
RPS3A
DNAJC6
CCNL1
ENOSF1
ZPBP2
IKZF3
SSTR5
SRRM3
PTPRN
WTAP
SOD2
FN3K
GTF3C3
EIF3B
CHGA
EXOSC6
GJA10
LMCD1
NRSN1
CHRNB2
ABCC6
SCRT2
NEUROD1
LTB4R
CIDEB
CDK5R2
RABGGTA
LDAH
PPP1R3C
SP5
PTMA
AKAP10
TENT4A
SF3A3
ACTL6B
AAR2
RBM39
PGBD5
SLC3A2
UNG
TCAIM
SLC7A7
ALKBH2
PPY
FAM177A1
LRRC59
AARS2
CYP21A2
ZNF286A
LUC7L
GID8
GET4
DIDO1
RNF187
CCDC107
NR1D1
NANP
RMND1
ARMT1
TMEM181
SCAMP5
DNAJC11
ENO1
PTP4A2
INTS12
GSTCD
SCAF11
C6orf136
SOS1
SMC3
MAP2K2
LRP6
SUGCT
MPLKIP
IFNAR1
PCDH8
DCP1A
NUP62
IL4I1
ATF5
SPTSSA
NAA20
ADCY4
EIF4A3
CTF1
BCL7C
TSGA10
THNSL1
MAPK8
SCGB1D2
PC
NHLRC1
CTR9
ZCCHC7
SUPT3H
HSPE1-MOB4
HSPE1
HSPD1
FGFBP3
TRIM67
SLC9A1
RRP15
PEX3
NID1
GRIA2
ARL6IP1
ADAT2
MTERF4
DOCK6
IARS1
ZNF501
NUP160
CDC16
ELOVL3
TOLLIP
RXRA
PIKFYVE
PDE4C
NUBP1
NREP
GOPC
CABP7
ZFP1
WDR31
SRP54
CUL5
URGCP
UBE2D4
OSBPL8
L2HGDH
HELB
GMCL1
DMAC2L
AKAP11
TRIM8
SPHK1
MAT2A
CLVS1
RETSAT
PARD6A
MIPOL1
G2E3
FTCDNL1
ELMOD3
CHD9
C14orf119
ACIN1
ACD
ZKSCAN8
PMS1
ORMDL1
HAAO
CEP126
CBWD5
CBWD3
ATF7IP2
ANGPTL5
SHOX2
RSRC1
C12orf66
KANSL3
FER1L5
DBI
C2orf76
ALCAM
ZSCAN9
MLLT1
DDX56
RUNDC3A
MRPS35
LIMS1
TRMT6
PAQR4
MCM8
KREMEN2
KAAG1
DCDC2
COPS6
APMAP
AGPS
MEIS1
CBWD6
UFSP1
SUGP2
PBLD
OXSM
NGLY1
MRPL16
HNRNPH3
GRM4
GOLGA8A
CDKN2AIPNL
ARMC6
ACHE
ZSWIM7
TTC19
TINF2
ROMO1
MRPL35
IMMT
EDRF1
CTNNA2
CRNKL1
CFAP61
MOB4
ACAD9
COQ8A
CD274
ATR
ZNF219
ZNF2
TTI2
RNF103
POGK
NET1
UBAP2L
C1orf43
SOGA3
NABP1
PIMREG
MPHOSPH10
MCEE
HNRNPH1
DTX2
BRMS1L
TMEM18
RAB3GAP2
ASCC3
ANAPC10
ABCE1
PLIN5
LOC100287896
LIPT2
KHDRBS1
ELOVL1
PSMD7
PHF1
JRKL
HPS5
GTF2H1
COMMD1
CCT4
CCDC82
C16orf46
WDR43
PAAF1
ITGB3BP
GMNN
EFCAB7
DHRS2
COA4
SHQ1
SEC24A
RABL2B
PYGB
FBXO33
DHX35
CEBPZ
YDJC
XKR9
VTA1
TTLL4
TOP3B
TAB1
SOWAHC
SEPTIN10
SC5D
RPP38
NMBR
LACTB2
CTDP1
CCDC116
SPATA5
NUDT6
IMPDH2
HNF4G
ATG7
TTC26
THOC3
SPATA25
SLC38A1
RETREG2
NEURL2
METTL25
CTSA
CNPPD1
CCDC59
PSMF1
HNRNPC
EEF1AKMT1
ZNF202
RPL15
NKIRAS1
MVD
HSD17B1
CTNNB1
CD320
C2orf73
ARPP19
SERF1B
SERF1A
PGP
OSGEP
BRICD5
APEX1
VPS16
RPL5
RNMT
PCNX4
PCED1A
MIS18BP1
FAM210A
EPB41L4B
DCAF10
THUMPD1
PCID2
MRPL27
MMAA
MARCHF8
LBP
GATAD2A
EME1
CUL4A
TSG101
SLC7A5
RNF146
PRPSAP1
PET117
NOP2
KAT14
HHIPL1
HEATR1
FBXL17
CLN5
CLK1
CCDC85C
UCKL1
STX18
SLC25A36
SEC61G
SDCBP
POLR1H
GOLGA5
CWC25
ZNF425
ZNF398
STARD7
FBXO4
EEF1AKMT2
DDX19B
CPNE4
CHFR
ATXN2L
ANKEF1
WDR48
WDR41
STIP1
SCN11A
RRN3
PPT1
NSRP1
NPM1
NHEJ1
KIZ
KIAA1958
EAPP
DUSP28
DCUN1D5
C9orf147
ANKMY1
TTPAL
TRA2B
TOMM5
SLC37A4
PPME1
GAS2L3
CD302
C2CD3
TEX14
RAD51C
PTPRA
PPP4R3B
PHOSPHO2-KLHL23
PHOSPHO2
NFIX
HSD17B12
EIF4G2
DHRS4
CHEK1
CCDC173
TMEM223
TMEM179B
RAMAC
MOCS2
BMS1
AHI1
ACAP2
TEX46
TBC1D15
KDM1A
HNRNPF
FRG1
USP47
TNXB
TNPO1
TMEM101
SPAAR
SF3B6
REXO2
MATN1
FAM228B
DUS1L
CENPA
C4B_2
C4B
THAP5
SPAG16
SNRPD1
RIF1
PSMD12
MLH1
MAIP1
GINS1
EPM2AIP1
DNAJB9
CCDC34
AKTIP
ZER1
TTC30B
TBC1D32
SMIM26
SF3B5
NFU1
LSM12
G6PC3
DUS2
DDX28
CZIB
CEP192
ZCCHC9
TOB2
TMEM116
SLX4IP
SLC25A28
SF3A2
SEH1L
PLEKHJ1
MKKS
L3HYPDH
JKAMP
ICE2
FBXO48
ERP29
CIAO3
C6orf62
ASNS
APLF
STAU1
SFI1
SERINC3
RPS7
RPLP1
KLHL9
HUS1
EXD1
DDX27
CHP1
CAT
SMPDL3A
NPIPB6
NCL
MGA
MAGOHB
GUSB
GPR6
ZFHX2
ZBED8
WASHC4
TIMM23
THTPA
SGF29
PPM1D
MBIP
FAAH
PPP1R3D
PLAA
OSGEPL1
METAP2
IFT88
IFT74
FAM217B
FAM149B1
ECD
ZBED9
UBE2E3
SEC31A
RALGAPA1
PRMT2
NCK1
CSE1L
SLC25A13
PLS1
NDUFA12
LRRC61
KRR1
KNOP1
JAM3
GOSR1
DBP
CHORDC1
CDCA7
ATP5MC2
ACTR3C
IDH3B
WDR35
TMA16
SCAND1
PUM2
MDP1
CHMP4A
ZNF451
TRAF6
SDHAF3
RIOK1
RAG1
PEBP1
FUT10
CAGE1
ANAPC1
ACYP2
VPS52
TTC17
TOP1
RPS18
PRPF38B
PPAT
PAICS
NAGK
FAN1
B3GALT4
TRAK2
TMEM230
TBRG4