ChIP-Atlas: Target genes

Potential target genes for HDAC4

Query protein: HDAC4
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: HDAC4 | Average
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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HDAC4's Target genes

◣ HDAC4: Average

◢ SRX2140208: MM.1S

◢ SRX8213853: SK-LMS-1

◢ SRX11525509: SK-UT-1

◢ SRX11525512: SK-UT-1

◢ SRX13466113: SK-UT-1

◢ SRX13466116: SK-UT-1

◢ SRX6054277: SK-UT-1

◢ HDAC4: STRING

WDR74
DUX4
MTRNR2L1
SPATC1L
MTRNR2L2
MSH3
DHFR
FRG2C
MTRNR2L8
SP2
TNFRSF19
SNX16
COL23A1
ADAMTSL1
FRG2
CABCOCO1
DNM2
H4C3
H1-6
EVI5L
MUC3A
CLPB
CCDC200
UNK
H3-3B
CDCA3
H4C14
FEM1A
H4C11
H4C15
RFX1
BOD1
DDX49
COPE
PAFAH2
PHF12
SLC8A1
RWDD1
IFRD2
CHMP4B
KATNB1
VPS50
HEPACAM2
RBBP5
POLR3F
DZANK1
FBXL19
AP2S1
KHSRP
PHB
FAP
SP1
NAV3
TCEA2
RAB5B
RAG2
IFTAP
SCNM1
LYSMD1
SLC25A25
CIC
SUCLG1
ARID5B
H4C2
H3C2
H2BC4
H2AC6
MMACHC
TMEM115
DDX23
MAPKAPK5
TEPSIN
NDUFAF8
NAIF1
SLX1B
SLX1A
BOLA2B
BOLA2
ID3
WDPCP
MDH1
ANKHD1-EIF4EBP3
ANKHD1
YJU2
MRPL24
PAK1IP1
C6orf52
THRAP3
PES1
NEBL
IRF2BP2
BOLA2-SMG1P6
PEX14
DFFA
TBL1X
PPP1R12B
MRPL11
ING4
NCLN
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SPAAR
CALR3
C19orf44
PRCC
GSPT1
BANP
ZFYVE1
CCDC90B
TSNAXIP1
RANBP10
VIPAS39
AHSA1
SMPD3
PEMT
EHF
RPS7
TOM1L2
DRC3
HDAC9
H4C12
AURKAIP1
GALM
RPS20
TSC2
NTHL1
OSBP
TSN
C16orf91
GTF2H4
MTOR
LRRC29
ST3GAL2
PNKD
AAMP
PNPLA6
INTS9
HMBOX1
ZNF547
TRAPPC2B
HNRNPC
NUP205
TMEM70
NDUFS3
KBTBD4
ELOC
TARS2
RPS3
RPL32
SYMPK
FOXA3
PPRC1
LRCH4
FBXO24
INVS
ERP44
SF3B6
FAM228B
NLK
ID1
CCAR2
C8orf58
UBQLN4
LAMTOR2
ZNF268
ZNF225
C19orf53
NUF2
OR4M1
ORMDL3
LARS1
SCAF1
RRAS
TXNRD1
BUB1B
TSSC4
POLDIP3
COMMD1
CCT4
GSK3A
SLC35B1
CACTIN
LSG1
ZNF143
TACO1
SUPV3L1
C1orf159
RANBP2
ZNF165
SF3A3
FASTKD1
OR4Q3
PIN4
PSMD11
NUDCD1
PRRG2
NOSIP
SLC35E2B
FAM168A
NFKBIL1
ATP6V1G2
ZNF17
CCDC146
SIRT4
H4C5
H2BC7
TBL3
TMEM94
NDC80
METTL4
DYNC1I2
ZNF687
ZNF383
GPR137
GATB
TMEM107
RGPD2
RGPD1
SSR3
SPSB3
NUBP2
UFD1
CDC45
OAZ3
TRIP10
GPR108
PRR14
ZNF335
SNX17
EIF2B4
NPRL2
CYB561D2
STT3A
HEXB
TFPT
PRPF31
ZSCAN22
ARID2
STAM
VCPIP1
C8orf44-SGK3
G3BP1
UBAC1
SIRT2
SCRIB
NFKBIB
UFSP2
C4orf47
MTRNR2L9
BMF
SP5
MICOS13
HSD11B1L
FRMPD4
CYCS
GBA
TSNAX
MRPS7
GGA3
SART3
ISCU
SLC39A1
CRTC2
TIMM21
FBXO15
COMMD9
NR6A1
HRCT1
FLAD1
KRR1
ZNF608
STIP1
RNASEH2A
PRDX2
DDX39B
NUP107
TNFRSF12A
THOC6
HCFC1R1
AK2
TMEM60
PHTF2
TMEM11
VTI1B
COX16
MAMDC2
KHDC4
RPIA
ZNF691
LMAN2
EIF2AK3
CCDC174
ZBTB38
ZNF417
TBL1XR1
MRPL53
WDR46
PFDN6
ZNF235
PSPN
ALKBH7
EXOC3L1
E2F4
ZNF444
DSTYK
SUFU
ACTR1A
PIGL
NCOR1
MEIS1
FARSB
UBR2
DDX41
TULP2
NUCB1
NFIB
KBTBD6
CNIH4
PANK4
MED27
HES5
GOSR2
SPHK2
RPL18
FAM83E
TRDMT1
EXOSC5
BCKDHA
ANAPC5
SUPT7L
SLC4A1AP
METTL3
FAM187A
EMILIN1
EFTUD2
CCDC103
SRSF11
LRRC40
TM4SF18
SLX4IP
MKKS
BAHCC1
TMTC3
REXO1
CEP290
SEC11C
INTS1
PSMC5
FTSJ3
ISY1-RAB43
ISY1
VEZT
FGD6
TTI2
HEXIM2
EIF3F
NMT1
DCAKD
PSENEN
LIN37
SMG8
MRPL21
IGHMBP2
NME1
RAB11B
SSBP1
TMEM242
C19orf48
ZSWIM3
ACOT8
PWWP2A
PHB2
NUDT13
AHCYL2
HNRNPL
GDE1
CCP110
NPAS4
RNF121
MTRNR2L10
LOC100133315
ATP5F1B
NDUFS7
EMILIN2
C19orf67
ZNF337
PRICKLE3
ING3
COX7C
TATDN3
NSL1
RPGRIP1L
FTO
METTL26
PSMB6
CDK5RAP2
SEC61B
SUGP1
MAU2
TCERG1
VWA5A
GTF3C3
ZFPL1
TMEM262
CDCA5
UBE2I
ZNF576
IRGQ
TBC1D10B
MYLPF
BUB3
PCM1
KRT15
ZNF548
NEDD8-MDP1
NEDD8
IPO13
GMPR2
RPS27A
H4C8
CLHC1
MRPL28
CLN3
APOBR
ATG4C
RPS6KB2
ATP6V1G1
ZMAT2
ZBTB45
MRPL30
MITD1
CAND1
NOC4L
EMCN
DDX51
SEL1L
POLR2E
C12orf43
NDUFAF5
ESF1
BABAM1
RHOT2
CCNL1
EMC4
USP17L22
USP17L20
TRAF7
ZC3H10
SMARCD2
RPL41
DHX8
CTU1
CCDC124
HNRNPUL1
KRT23
EXD2
CAPN15
SLC25A20
UBC
CTDP1
RPL9
RBL1
LIAS
STK36
RNF25
PHF19
RARB
UTP3
FNDC3A
ZNF500
SEC13
RPL18A
ZNF776
EXOC4
GSTO2
VPS25
SMARCAL1
PPP1R12C
TRMO
PABPN1
SRD5A1
NSUN2
SSBP2
TRIP4
PPP6R1
PPP5D1
GUF1
CALM3
ZNF773
NOP16
HIGD2A
ARHGEF1
DLGAP1
ZNF140
ZFYVE19
OPRL1
LKAAEAR1
DNAJC17
TMEM160
ATP5MG
SNX1
CIAO2A
CD2BP2
SMAD3
CRADD
AP2M1
TOP2A
MTRF1
EPS15
STAM2
IARS2
BPNT1
RCAN1
PDE6D
FBXW11
COPS7B
TRAPPC6B
PNN
ZNF211
RPL37
DYNC2I2
CCL3
COPS7A
SYT7
TLE3
ZCCHC4
SLC39A9
PCBP1
MT2A
ERH
RPAIN
PRORP
PPP2R3C
NUP88
CENPA
TBP
SSBP3
PSMB1
ZNF286A
H3C15
H3C14
H2AC19
H2AC18
PEX2
INO80C
GET3
FCF1
AREL1
STK25
SLC25A19
NDUFB3
FAM126B
ABT1
H4C4
USP30
ZNF688
JOSD2
CSDE1
ASPDH
WDR97
MAF1
DMAC1
ZNF628
TMEM109
BRWD1
SESN1
CEP57L1
USP48
ZCCHC8
TM9SF4
RPL35A
IQCG
RABAC1
GLIPR1L1
CAPS2
RPL27
TRAPPC9
SHPK
PTEN
KLLN
CTNS
ZC3H12A
NDUFB5
MRPL47
TOR1AIP2
TOR1AIP1
INTS10
UBE2J1
PNISR
MRPS23
PITX3
HEMK1
GBF1
C3orf18
SF3B3
COG4
RPL14
MYOM2
GABPB2
XAB2
PCP2
PMF1-BGLAP
PMF1
GORAB
VRK1
ARHGAP17
TJP3
NR1H3
HSPA9
ACP2
SREK1IP1
CWC27
ZSCAN5A
SIX1
NTMT1
C9orf50
PNKP
COMMD2
CDCA8
C1orf109
ARHGEF2
NVL
TMEM63C
BMERB1
UTP11
ENPP4
CLIC5
LTA4H
KLHL29
TXNL4B
THYN1
DHX38
ACAD8
TOMM40L
PEX3
DENND1B
CA11
APOA2
ALKBH3
ADAT2
KCTD5
KLF2
PROSER3
HSPB6
TRIM55
PTDSS2
ATP2C1
STX16
TPRKB
XPNPEP3
ST13
KLF6
FUT10
TIMMDC1
TEKT2
ADPRS
TRAPPC3
HEXA
MRPS18C
HELQ
RAP2B
HBP1
C1orf198
NGB
GCLC
LNPEP
MDM2
MCAT
ABCF2-H2BE1
ABCF2
ADO
SCT
CDHR5
ACTL6A
ZNF56
RUFY3
RTRAF
RTF2
PEX26
COX7A2L
PEAK1
HMG20A
CXCR5
CCL5
CCDC39
TMEM256
NLGN2
TTC33
TGIF1
MDM4
SMCO1
ZPBP2
IKZF3
NCOA7
MNT
KAT6B
SNRPB
VPS52
RPS18
ILF2
NUP153
RBM25
NDUFC2-KCTD14
NDUFC2
NAT16
HCAR3
CHST12
RIIAD1
MAP2K3
KDM6B
IRF2BPL
CELF3
SNX15
ANP32C
KMT2C
EML2
DPP9
BTRC
ZNF226
LTN1
POLG
PARP2
LAMP1
FGG
CRYAA2
CRYAA
RGS8
MACC1
DHX33
AP1G1
ZNF384
SKA2
PRR11
PHC2
KANSL3
ID2
FER1L5
TJP1
MRPL20
MRPL1
DCP1B
UBE2H
DRAP1
C11orf68
PXMP2
POLE
LOC102723996
ICOSLG
USP3
COPS8
CCM2
RPS13
LAS1L
HSD11B1
CDYL
CDC20
PSMD4
OR6B2
NDUFA10
MED23
LIME1
WHAMM
RABL2A
FSD2
TRIM48
STMN3
RTEL1
FMO4
CWC25
TP63
TMEM79
SMG5
RBM42
MARS1
BBX
ARHGAP9
UBB
FOXK1
FAAP24
CEP89
RPS23
LEFTY2
EXOSC6
CMSS1
ATP6AP1L
WDR83OS
WDR83
MAN2B1
HOOK1
FDPS
AQR
RAD51AP2
MRPL44
C2orf42
ZNF565
ZNF146
TPST1
TMEM143
SYNGR4
SECISBP2
RAD51AP1
METTL25
FAM156B
FAM156A
CCDC59
C16orf72
C12orf4
ZNF552
WBP1L
WAPL
SELENOH
GEMIN6
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
NFATC2IP
SPC25
INSR
FOS
SATB1
SAP30BP
RECQL5
KDSR
IER3
FLOT1
CSNK1G3
CCR2
CRB1
ZC3H6
SPTLC3
NCDN
KIF16B
KIAA0319L
EIF4A1
CDK8
ZNF749
ZNF584
TIMM22
RPL29
PTMA
PHF23
LRRC14B
DVL2
WBP2
SCYL3
RANGAP1
PRPF18
MAMSTR
FOXP2
ZNF419
SLC33A1
PRPF19
NR1H2
CCDC77
TBCK
STAP2
SART1
MPND
DPEP3
AIMP1
PSMD1
MED6
LUC7L2
GALK2
FMC1-LUC7L2
FMC1
COPS2
STOML2
MFAP3L
ERVMER34-1
EPYC
COPZ1
CGGBP1
CCL3L3
CCL3L1
C3orf38
ATXN2L
ZNF451
TYK2
RBM28
ZNF609
TLR5
IFI44L
ZMYND8
SCGB1C2
SCGB1C1
RGS3
RAP2A
MYCBP2
MPV17L2
EPRS1
CSTF1
AURKA
GABARAP
DHX16
CLEC7A
SULT2B1
NPIPB5
NDUFA2
MTR
IK
CHD6
SLMAP
SLIRP
FBXW9
BIN2
ALKBH1
ZSWIM1
UNC93B1
RAB40B
NDUFAB1
HIRIP3
HAX1
ECT2
CRYBB1
TAF6
SLC9A1
OXCT2
MAPKAPK2
KLHL20
IDH3B
CNPY4
ASB4
ASAP1
PLCD3
DMAP1
ATG9B
ARNTL
ACBD4
ABCB8
TDRKH
PPIL3
NIF3L1
MTBP
MRPL13
IER5L
ASXL1
SMARCA4
RPS12
IFIT1
TPCN1
TAOK3
SUDS3
RPL21
NMNAT1
MGP
LZIC
TSC1
SH3RF2
PSAP
MYEOV
MTFR2
GFI1B
CEP128
AMOTL2
UBQLN1
TOMM40
MACIR
UQCRC2
TUT1
SCAMP4
MYNN
EMX1
CLPTM1L
ADAT3
ACTRT3
ZNRF3
ZNF668
ZNF646
SH3GL1
SACS
P2RY10
OCSTAMP
DAPK3
CWC22
CHAF1A
TMED10
TCF3
NXNL2
NSMCE3
GFM2
FAM207A
CSTB
TFB2M
GCG
CYP2R1
CNST
CCDC61
RFC4
PTBP1
KRI1
KIF22
ITGB1BP1
CPSF3