ChIP-Atlas: Target genes

Potential target genes for Hoxd9

Query protein: Hoxd9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7416187 | Embryoid Bodies
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Hoxd9's Target genes

◢ Hoxd9: Average

◣ SRX7416187: Embryoid Bodies

◢ SRX7416188: Embryoid Bodies

◢ Hoxd9: STRING

Hdx
Prdm13
Ngdn
Hoxa4
Hoxc5
Zfp473
Vrk3
Hoxb4
Gcnt2
Hoxd3
St3gal2
Hoxc4
Hoxb7
Hes3
Gnat3
Hoxa3
Hoxa5
Tlk1
Ttr
Arfgef1
Apcs
Mad2l2
Draxin
Clasp2
Rbm25
Tshz3
Dnm2
Crp
Radil
Krt222
Mbnl1
Kmt5c
Atg4c
Sgpp1
Cmtr1
Oxnad1
Dph3
Scn1a
Skida1
Adipor2
Pcnx3
Map3k11
Oacyl
Trim23
Trappc13
Shld3
Phactr3
Hoxb5
Zfp143
Ing3
Actn4
Sox6
Enpp3
Tbc1d10b
Mylpf
Hsdl2
Elmo2
Lysmd3
Tpm3
Ifna9
Arpp21
Got2
Sema6d
Eif2s3x
Gtpbp1
Tti2
Rgs5
Crb1
Chchd5
Phc2
0610009B22Rik
Acot1
Rps23
Cyp19a1
Pum1
Ccdc60
Myo10
Aven
Etv3
Ccdc174
Aktip
Tbc1d9
Narf
Tcim
Lta4h
Nup107
4930550C14Rik
Olfr298
Zkscan1
Egr2
H6pd
Dus1l
Spp2
Kcnip2
Pik3r1
Tom1l2
Drc3
Aebp1
Lrrtm2
Celf4
Fyn
Garre1
Fam181a
Mutyh
Elavl4
Zfp945
Vamp9
Supt6
Sdf2
Tex14
H2bc6
H1f4
Atic
Olfr1098
Eps8
Art3
Percc1
Tcerg1
Ajuba
Dipk1a
Stk33
Srbd1
Zfp672
Lpar4
Dnajb5
Krt9
Nacc2
Thsd4
Cux1
Nebl
Kbtbd6
Evi5l
Srpk2
Cryzl2
Ngef
Neu2
Jakmip2
Sumf1
Sh3pxd2a
Nell2
Tro
Slc25a42
Mrfap1
Schip1
Fer
Lin28b
Ufc1
Cntn1
Vkorc1
Poc5
Repin1
Arg1
Polr3gl
Dnah5
Hoxa2
Ankrd40
Trio
Postn
Zfp503
Myt1
Abr
E4f1
Nmnat3
Wdr6
Rarb
Dhx16
Sos1
Lrrcc1
Fam117a
Gpr1
Ranbp9
Galk2
Cops2
Pth1r
Zc3h8
Kif21a
Cdk19
Zdhhc16
Exosc1
Ptger2
Leng9
Ttc1
Phpt1
Tnks2
Runx1t1
Nr4a2
H3c13
H2bc18
Hoxd8
Ralbp1
Wdr7
Ubl3
LTO1
Fam13c
Aftph
C2cd5
Spata48
Alkbh5
Nrxn1
Klhl5
Slc25a51
Urm1
Tmem100
Pacrgl
Epc1
Coq10a
Sall1
Mrps36
Sh3bp5
Ints14
Nudt15
Rabl2
Osbp
Fzd10
Zfp334
Rufy3
Ssr3
Mn1
Serpinb8
Spink7
Natd1
Agk
Btbd8
Atxn7l3b
Rpl3
Wdyhv1
Rnf4
Ddx39b
Dad1
Abhd4
Vamp1
Slc25a25
Fbxw7
Tfpt
Prpf31
Cox20
Gtf3c6
Arpp19
Wnk1
Tfb1m
Ubr2
Atp6v1g1
Alyref2
Pyroxd1
Asf1b
Smarcad1
Med25
Rps26
Eif3c
Sf3a2
Plekhj1
Rtcb
Tubb4b
Rab28
Atp5l
Zfp628
Hoxa9
Eef1akmt1
Gm3448
Gm3417
Tcte3
Ermard
Slc7a1
Uts2b
Scp2
Atg2a
Rap2b
Zfp608
Scml4
Spata7
Gpr19
Celf3
Tmem60
Phtf2
Slc9a6
Smug1
Nr2f1
Cstf2t
Pabpc1
Gm4791
Ift46
Vps29
Rad9b
Fmc1
Nek1
Spag9
Bco1
Khdc4
Rfx4
Sall4
Sc5d
Zbtb18
Hpgd
Mapk6
Rab40c
Esrrg
Nedd9
Lmbr1
Gpn3
Fam216a
Tcta
Rhoa
Tgif1
Gask1b
Osbpl9
Zc4h2
Fam160a1
Mlkl
Ttc21b
Gsk3a
Cpsf4l
Tspyl4
Fhdc1
Itgb8
Mrpl4
Nemf
Rabep2
Nop53
Slx4ip
Mkks
Abca7
Wdr41
Lrrc15
Hoxc6
Cntn5
Akirin2
Prdm10
Cad
Rabgap1l
Hspa8
Cep120
Kbtbd8
Rbm5
Cdh6
Dars
Micu3
Gns
Psmd5
BC048671
Mybpc1
Tatdn1
Ndufb9
Mapk1
Eif3f
Pgk1
Spink10
Fbxo38
Tlx3
Slc25a39
Marcks
Agfg1
Rab18
Slc8a1
Vipas39
Tle4
Dmtn
4930402H24Rik
Ypel1
Cnot3
Gpr12
Olfr1129
Insig1
Zfp663
Ttll11
Rcan1
Gramd1a
Fgd4
Nhlh2
Myh2
Ric8b
Gfod1
Rab37
Tmem87b
Mvb12a
Ogfod3
Hexdc
Maf
Itch
Reln
Map2
Zfp521
Fam135a
Rab13
Atg10
Hnrnpd
Cnr1
Rcan2
Tfdp2
Zfp689
Ano3
Snrpc
Mllt10
Rnmt
Fam210a
Dhrs3
Phox2b
Fam110b
Colec12
9030025P20Rik
Zup1
Tmco5
Cox6b1
Ecpas
Cdh9
Prkag1
Tmem178b
Jazf1
2010315B03Rik
Fbxl7
Dchs2
Tshz1
Prickle2
Shisa3
Elavl2
Olfr598
P4ha2
Pnn
Galnt11
Tmem178
Zmat1
Rxrg
Hspa14
Cdnf
Smarcal1
Teddm2
D630045J12Rik
Tstd2
Ncbp1
Tyw1
Sbds
Trp53bp1
Fbxo31
Cntf
Dct
Tbc1d10c
Ppp1ca
Slc35f5
Zfp60
Polg
Sema3c
Slc25a1
Elk1
Kifap3
Zfp707
Zswim2
Spock3
Fbxo21
Clnk
Trp53bp2
Fbxo16
Samd4b
Gmfg
Prim1
BC051142
Rnf44
Haus4
Coq7
Hdac9
Klhl1
Sgip1
Acot7
Lama1
Gem
Lars2
Psmc4
Sdhaf4
Msl3l2
Smarca2
Nfkb1
Ehbp1
Spock2
Tyk2
Caml
Zfp84
Snx30
Tmem11
Fig4
Ak9
C1qtnf3
Arpc5l
Dhrs7b
H4f16
Shroom2
Gm3667
Usp14
C9orf72
Mrps28
Cmas
Ap3m2
Dusp23
Gse1
Poglut3
Gapvd1
H3c6
Cluap1
1700037C18Rik
Prkcd
Lsm6
Fignl1
Taf4
Chd4
Bahcc1
Selenof
Hs2st1
Hps5
Gtf2h1
Fbxl2
Lhpp
Gm5165
Marf1
Kpna2
Cplx2
Slc16a7
Ppfia2
Zfp146
Ralyl
Tmc6
Tm9sf4
Cxxc5
Arhgap36
Scn5a
H4c11
Prr5l
Vps11
Mrpl33
Zfand2a
Stoml2
Map1a
Tmem65
Znrd1as
Znrd1
Tmem97
Iftap
Fgfr3
6820408C15Rik
Pcnx4
Dhx33
Eapp
Atp5o
Dennd1b
Flywch2
Dpt
Crebrf
Umad1
Rpa3
Nfyc
Vcp
Ppp2r5c
Klhl9
Pcm1
Mapkapk5
Dusp6
Exoc1
Hoxb3
Mospd3
Trim37
Mtmr6
Zfp97
Hikeshi
Acss2
Maz
Mrnip
Ndst4
Igsf23
Dcaf11
Tut1
Rdh11
Degs1
Hlcs
Kat6b
Nicn1
Nck2
Nudt1
Mrm2
Usp40
Sntb2
Setd4
Zfp318
Fem1b
Npas4
Rack1
Meis1
Sdccag8
Cep170
Ttc32
Ell
Snx15
Gm3435
Oxr1
Men1
Akr1e1
Ckb
Tcf3
Slc37a2
Snx6
Nt5c3
Aptx
Stra6l
Cdkal1
Nfam1
Cic
Chordc1
Peli1
Wdr20
Knl1
Uqcrq
Ggnbp2
Dennd5b
Zfp710
Rnf111
Nsg2
Dennd11
Xlr3b
Vill
Zfp1
Ska2
Prr11
Sod2
Atp6v0a1
Tesk2
Btbd17
Glce
Supt7l
Slc4a1ap
Jhy
Stk35
Rad23a
Zfp329
Cenpc1
Bbc3
N4bp2
Olfr53
Tinf2
Tmem208
Lrrc29
Cdh12
Trim67
Med6
Klf3
Gm51425
Ebf1
Tagln3
Zfand6
Ss18l2
Rbfox2
Rdm1
Wdr95
Trappc4
Rps25
Ppt1
Ppm1a
Rab36
Pik3ca
Shcbp1
Pla2g15
Psme3ip1
Pdia6
Slamf8
H2-M10.1
Grrp1
Mtnr1a
Dnajb9
Psd3
Hmox1
Otx1
Eif4e3
Tbc1d17
Akt1s1
H2ac21
Kmt2b
H2ac20
Map9
Map3k5
Msh5
Ndufs2
Idh1
Cnpy3
Vmo1
Arfgap2
Prkrip1
Gm20346
Cachd1
Zc3h18
Tmx1
Shoc2
Bbip1
Adh4
Rnf220
Neurog2
Uqcrc1
Rbm33
Enkd1
4933405L10Rik
Slc33a1
Glipr1l1
Tpd52l2
Ranbp2
Crebzf
Phip
Spns1
Prdm12
Xrn1
Jmjd1c
Ip6k2
Slc12a6
AB010352
Tspyl2
Ppm1k
Sgf29
Necap1
Morf4l1
Nkx1-1
Rai1
Vps36
Rps27a
Clhc1
Sacs
Rfx1
Car14
Mbd2
Slain1
Stmn2
Cacna1a
Dynll1
Alg9
Baz1a
Chn2
Cxxc4
Stac
Ruvbl1
Rtel1
Chst12
Ankrd6
Myo1b
Rps14
Ccdc30
Lrrfip1
Zbed3
Pnpla8
Sirt6
Ankrd24
Iqschfp
Iqcj
Frem1
Nr2f2
Tcea1
Zfhx4
Sox1
Shc1
Cks1b
Nxn
Mynn
Nfil3
Meig1
Chaf1a
Hint1
Cntrl
Zfp354b
Cdc45
Smc3
Ddx5
Cep95
Ssc5d
Snx32
Inpp4a
Bbs2
Zbtb5
Sulf1
Kif21b
Frg1
Myo9b
Haus8
Meis2
Ppm1b
Npepps
Ccng2
Usp1
Mettl2
Pcdhgc4
Ndufs5
Gabpb2
Tceal8
Asf1a
Zfp260
Reep3
Sptlc2
Prmt8
Ncln
Dnpep
Mgat5
Ebpl
Mobp
Bche
Phrf1
Hoxd4
Unc13b
Glul
Vwde
Prrxl1
Flad1
Ssbp3
Sdr39u1
Kcnj8
Tshz2
Acyp2
Gm6712
Lsm4
Zeb2
Lpl
Rnf187
Raet1e
Raet1a
Pkdcc
Btf3l4
Lrif1
Pou2f1
Trrap
Npc2
Isca2
Rnf122
Rsrc1
Spg7
Prickle1
Glipr1l3
Katnal1
Abcb8
Plpp7
Mpp3
Uba1
Zcchc17
Snrnp40
Xab2
Pet100
Tmem160
Zfp317
Poc1a
Mtf2
Psmg4
H3c2
H2ac4
Acads
Ptcd3
Polr1a
Hes1
Elp6
Angpt1
Poldip3
Ppp2r5d
Zfp637
Tle3
Fbln1
Ado
Swsap1
Hdac4
Lars
Sdcbp
Clptm1
Arvcf
Dhcr7
Rangap1
Zfp949
Daam1
Zfp867
Sh3bp5l
H2-Q9
H2-Q7
Tsc22d1
Ednrb
Trmt10c
Tspan14
Nhlh1
Arid3a
Sdhaf1
Zfp708
Ess2
Akap11
Anapc15
Mef2c
Utp6
Serinc1
Top3a
Smcr8
Rab27b
Immp1l
Elp4
Robo2
Zfp422
Tbce
Sez6
Zfp384
Art5
Wdr5b
Ets2
Gtdc1
Rnf32
Gps2
Pdp1
Hsd17b7
Eci1
Dhx9
Zfp960
Lgr4
Eef1a1
Ndufb3
Fam126b
Rps27rt
Tbp
Tia1
Fez1
Leo1
Echdc1
Rttn
Mpped2
Crppa
Zfp78
Lsg1
Zfp536
Lrp8
C330007P06Rik
Mkrn2
Ubp1
Hddc3
Plch1
Zfp712
H2bc8
H2ac8
Nup205
Mxd3
Ing4
Tmem154
Psip1
Srsf7
Ten1
Acox1
Nr6a1
Prdm8
Ctps
2310033P09Rik
Ccdc107
Mcts1
Trmt10a
Igf2bp3
Slc25a23
Pla2g2e
Riok3
Vps4b
Rpl5
Zfp667
Rccd1
Sil1
Creb3l2
Pafah1b2
Wdr47
Sik3
Selenov
Ctbp2
Rem2
Mdn1
Hip1
Rapgef2
Ptch1
Cul2
Eif2b2
Zc3h12c
Zic3
Soga1
Naxd
Pax6
Zscan20
Mmachc
Ccdc163
Zdhhc21
Setd1b
Olfr100
Rab11b
Flywch1
Kcnmb1
Kctd5
Mysm1
Sgpp2
Zbtb20
Gspt1
Arhgap20
Dcaf12
Rhob
Eda2r
Tbc1d16
Ccdc40
Plk2
Fam221a
Ccdc12
Bmyc
Map1b
Kdm5b
Slc31a2
Nlk
Onecut2
Ttll13
Nub1
Oip5