ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478468 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◣ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
SIRT4
CCDC200
H2BC5
APPBP2
PFDN4
H1-2
POLG2
PSMD6
RGS22
C12orf57
SCRIB
TRIM37
H2BC11
H2AC11
FKBP4
NRAS
H4C8
H3C15
H3C14
H2AC19
H2AC18
H2BC4
H2AC6
BCAS3
STX16
NPAS4
TUBD1
RPS6KB1
H2BC21
H2AC21
H2AC20
PPM1D
NCOA3
POLR2J3
PARD6B
H4C5
CLTC
USP32
CALM1
ARFGEF2
H3C13
H2BC18
RBL2
VPS26C
BRIP1
THOC6
HCFC1R1
PRUNE1
MINDY1
TEX14
RAD51C
RNFT1
MAZ
SIX2
DHX40
EIF2D
ENTPD5
BBOF1
TRMT12
ZMYND8
TPM1
FBP1
SLC45A4
AKAP1
SMARCD2
H3C7
H2AX
GREB1
SPATC1L
ABCA5
HTR5A
MAN2C1
EIF1
AMZ2
SLC25A24
HEXIM1
RBBP5
SNX16
LLGL2
SCAMP3
H4C14
H4C15
FAM53C
CDC25C
TTLL3
C1QTNF6
EHMT1
ARL6IP1
CSDE1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CDH18
RAE1
VEZF1
ISG20
IMPDH2
INTS2
HIPK1
C6orf226
SYCE2
MPND
RTEL1
HNRNPH1
TEX22
PTPN1
MRPS23
NOL11
EXOSC6
WBP1L
SPTSSB
RPL12
LRSAM1
THAP5
DNAJB9
FAM227B
DTWD1
TRIM33
ABCA3
POLD1
PIK3R3
MICU2
COIL
ATXN7
SNAPC5
ZNF217
ARID4A
H2AC16
SETD5
TFF1
PDXDC1
RNF114
DCLRE1B
AP4B1
H4-16
SLC44A1
ATP5F1E
NSG2
EPN1
SRSF7
BCAS2
POLDIP3
ARNT
MPV17
CPLX2
FIS1
SLC16A6
NELFCD
ARSG
AKAP8
ZFAT
PRKAR1A
HEXA
FUT11
FBRS
USP8
FAM72D
FAM72C
COQ7
IRF9
TUFT1
PBX3
EBAG9
TRMO
PRMT6
FAM43A
CYB561
SLC25A19
KMT5B
DPY19L3
CRBN
SRSF5
NXF1
RPLP0
PA2G4
TMEM223
FAM133B
ZC3H10
CHMP4A
UBQLN1
USP42
ULK3
MAP3K3
FUT8
ADNP
MYL6
GID8
DIDO1
PDE4DIP
TIPARP
ZC3H14
PIK3C2B
UTP18
MBTD1
TRIM44
CYTH2
BSCL2
BCAS4
POR
ARIH1
WDR6
PRMT2
SENP8
P4HA1
MYO9A
BANP
METTL2A
LINGO1
MTHFS
YJU2
FAM220A
TRIM25
DPM2
DMRT2
TDRKH
PRKRIP1
TRIP4
ARAP1
DENND2C
C1orf56
MEMO1
SLC24A1
C3orf14
ZER1
STRADA
VCPKMT
KLHL12
ZC3H6
ADPGK
NUCKS1
NOTCH2
TBX2
HBQ1
RNF130
L3HYPDH
JKAMP
NBN
SLC44A2
DHPS
ST20-MTHFS
PPIC
ESYT2
H2BC12
H2AC12
CSKMT
C11orf98
DSTN
BFSP1
NBPF15
MVK
GALK1
EDC4
TDRD7
LRRC37A3
HIGD2B
ERAP1
BBS4
SH2B1
TOMM40
TACO1
KRTCAP3
H4C4
PPP6R3
LYRM1
PHC3
TP53BP2
PSMB4
NDUFS3
KBTBD4
DCUN1D3
TPD52L2
DYRK1B
DRG2
ERCC6L2
SLC2A4RG
LRCH3
PSMC5
FTSJ3
PCTP
CDK11B
CDK11A
TOB1
METTL25
CCDC59
XKR7
MRPS28
BRMS1L
THOC3
PPP1R3D
FAM217B
SMG8
OTUD7B
MAP4K5
ATL1
ZNF43
ALDOA
SLC35C2
STX6
PRMT5
FBXW9
COMMD4
RBM48
PEX1
MRPL21
IGHMBP2
NME1
MDM4
KLHL20
SEMA4B
MAN1B1
MEF2A
DOLPP1
ZCWPW1
MEPCE
RCCD1
STAT1
TMEM186
PMM2
DPY19L4
CYP1B1
CACYBP
C12orf66
CUL7
PFKFB3
RPS9
MAPK1IP1L
CNBP
LEKR1
IER5
IDI1
ROGDI
LMAN2
C2orf42
PAIP2
MAPK6
DDX59
ZSCAN5A
TMOD3
RNF7
GSK3B
DSTYK
PEX2
SSR3
CYB561D1
RIPK1
MPPE1
PSMG1
CYP51A1
PPM1E
LPIN3
AFF1
UGDH
MRPL53
EIF4A3
TAF9
RAD17
MSL2
MED13
AK6
YWHAZ
TMEM191B
CLPB
H4C11
UMPS
TSEN54
CASKIN2
KMT2E
LRRC46
IQSEC3
UQCRC2
ZNF768
UBFD1
EARS2
NAPEPLD
SEC13
PTP4A1
WDR4
SYT1
MTRNR2L8
RNF43
NIPSNAP1
HSD17B4
MTRNR2L2
CCDC141
TMEM52B
ITGAM
ANKRD23
CRPPA
RABGGTB
MIS12
DERL2
SLC10A6
KRTAP3-1
ENTPD1
ATP2B1
COLEC12
PKIB
ANKRD1
SLC7A6
LNX1
SH3BP4
PRKCZ
DLG2
SH3YL1
OLFML1
EID2
FGD3
TRPM6
SH2D4A
ZNF749
TMEM245
CCR5
ZNF343
LSM14A
CLCN4
LETMD1
BABAM1
NR4A1
PLAAT5
RGPD2
RGPD1
C6orf163
ERP27
P2RX6
LHX8
POU5F1
INSL4
ZNF641
SLC7A9
ADGRF4
CCNL1
GABRR3
MTRNR2L9
IQGAP2
TTLL7
STS
BIN1
SLC7A7
LSMEM1
ITGB6
RASSF2
FREM2
SNX27
SRI
FAM110A
CTNNAL1
SLC25A34
TACC2
LGR5
KDM5C
HOATZ
BTG4
ABCB8
KRT8
PLD5
UIMC1
FUT3
SUPT7L
SLC4A1AP
PIP4P2
SCNN1A
GALNT11
DEPP1
RHOH
LHX4
ORAI3
HSD17B1
ANXA3
NPL
IGFL4
SLC7A2
DAW1
CLPSL2
SLC25A26
SEH1L
GRHL3
MPP4
ACOT2
SMARCA2
TRIM22
TNFAIP8
NANOGNB
FERMT1
TTLL4
NRBP1
CDC14B
POLR1H
DLC1
TNIP3
LRRC14B
DNMT3A
BRD4
EXPH5
PPARG
ZFPM1
FMN1
DNAJB2
RFLNA
SLC4A8
GALNT6
CSGALNACT1
PCCB
PIK3C2A
APBB1IP
KIFC3
ALDH3B2
ARHGAP45
SHROOM3
MTUS1
ITGA2
PTPRD
DOT1L
TLK1
ADGRG1
NCOA1
WWOX
SMIM6
KMT5C
FGFRL1
CS
AMOTL2
PICALM
DUSP21
SPR
MAGI1
ZNF76
TNRC6A
LACTBL1
DENND6A
CALHM4
ZNF444
EHBP1
CCDC88C
TRIM45
LIMA1
FOXJ3
SCAMP4
MICB
ADAT3
PARP4
C11orf94
TNFAIP3
SLC39A1
HERC4
BAIAP2
TLE3
TMPRSS11F
FBL
PPFIBP2
ALDH4A1
TREML1
MORC4
TMCO6
NEURL3
ULK2
EPS8
EDNRB
EHMT2
C2
CSF1R
SLC12A6
OARD1
NFYA
ATP1A1
RNF19A
HSPB7
PEX3
CDS1
ADAT2
RIOX1
PPP2R3A
PDCD1LG2
C9orf131
GOLGA8B
KIAA1586
TENM3
HDAC5
KRT71
PIK3C2G
FAM107B
ANXA6
H2AC15
BATF
NEBL
IGFL2
ZBTB4
POLR2A
MID1
SYTL5
TRIM16L
NFX1
LATS1
GRAMD1B
S100A16
ADAP1
SULT1A4
SULT1A3
IFT43
ING2
SASH1
PPEF1
AP5B1
ZNF552
NSFL1C
NKIRAS1
SEPSECS
USP36
NRK
PGC
VNN2
TFDP2
MPO
LAPTM4B
ISM2
SPINK4
GSTO1
ZNF331
MKRN2OS
ARHGDIB
ZNF335
SPECC1L
HK1
ZMYND11
KLF7
PLAGL1
FLOT1
C1QBP
WDR87
SIPA1L3
PRDX3
ZBED9
RPF1
RFWD3
RANBP2
SGK1
PLS1
ADIPOR1
MYO18A
MAN1A1
TIGD2
ZNF337
NHSL1
CWF19L1
MEF2D
OR2B11
ALPK3
JUN
GSTA4
KLF6
PLXNB2
PAPOLA
ZNF451
PPP1R9A
IL22RA2
CRISP1
MAB21L4
CHD3
RHOB
KYAT1
DACT2
PINK1
CRY1
CD59
MPP1
HTRA4
NDUFA4
CEP85
BCAR3
TMPPE
SMC3
LMO7
GLB1
USP11
GNAI1
UBE2V1
TMEM9
PTN
GPRC5A
EPHA4
ZNF799
ARHGEF3
YIPF6
MYLK3
TXNRD1
AGAP3
IL31RA
TNS1
SPHK1
HMCN1
RAPGEF6
PPP5D1
PES1
PARP2
CALM3
GMEB1
TNFAIP1
SEPTIN9
IFT20
YEATS2
LDAH
FOCAD
FAM83A
RPIA
PNKD
PALM3
MBOAT2
H1-3
EPB41L1
DUSP3
ZFHX3
RIOK2
VIM
PTK2
FBXL18
CHRNB1
U2SURP
ROPN1B
SDCBP2
TMEM68
TGS1
RILPL1
P2RY6
HSPA9
EIF3D
MYBL2
CMC1
NEU1
CCNG2
SLC13A3
ARNTL
PRSS8
PRORP
PPP2R3C
TBC1D15
RTN2
P2RX7
LARS2
LAPTM4A
YTHDF2
RPN2
MROH8
DUSP9
VTCN1
TRIM34
THAP1
TGM2
LOC644090
ACSL1
LNP1
SPAG17
LPP
GJA5
TBC1D22A
SUN1
PDGFB
CALM2
TMIGD2
SLC9A1
SRP68
MACC1
LSR
AMOT
SLC29A1
DDB2
SLC6A4
SLFN12
RASGRP2
LOC112694756
STK11IP
NAA38
CYB5D1
BLCAP
GPRC5C
CLCC1
RNF144B
HNF4G
RXRA
ABLIM1
CTDSP1
TMEM211
RASGRF1
ALAD
CLOCK
CBWD5
CBWD3
AXL
ART5
NANP
GSTA3
CYS1
GPR146
TNKS2
RAB30
PLEKHG2
LGALS8
EDEM2
RBBP8NL
KRT13
H2BC15
FBXW12
ZNF155
FBXO32
RAD9A
TMEM267
RP1
NMI
ACTR1B
PCYT2
NPTN
TGM1
TNFRSF19
NDUFB6
H1-5
BMPR1A
RNPEP
OSGIN2
MTARC1
GAR1
BRI3
MED28
DACT3
ZZZ3
CRISPLD2
AKR1E2
AMD1
TRIML2
TLN1
RAD50
CRYGC
CREB3
CAPN8
LATS2
WT1
STARD13
RBM45
GRHL2
TRIB1
TGIF1
P4HB
GTF2H4
FUS
RIMKLB
RFESD
MGST3
TRIQK
SMPDL3B
ANKRD36C
CBWD6
DDX41
CFAP45
CKB
VPS45
CYSLTR2
MREG
CNN3
BRD3
CCDC183
FAM104A
KAT5
PDCL
MILR1
LRRC75A
KIAA0319
DTD2
HSF1
BOP1
ST3GAL4
LMBRD1
FSCN1
C11orf95
SIGIRR
SF3B4
DGKD
GNA12
AFAP1
SLC49A4
HSPBAP1
MRPS24
CYP3A43
BTRC
RPL6
PTPN11
DYSF
PPP4R3A
POLB
SUPT4H1
FAM162B
AP2A1
TBC1D24
GLDN
FGD4
ASAP1
WDR83
MAN2B1
UBXN4
SPATA2
RAD23A
GAS2L3
FER
C1QTNF9
USP2
MTR
CCNI2
ATG9B
DDX50
CAMK2D
MYL6B
UBE2B
TMPRSS4
QRICH1
CDKL3
PPP6R2
MICOS10-NBL1
MICOS10
FAM169A
DCTN1
BZW2
IMPA1
FBXO5
CREM
ANK3
CEP78
UNKL
GET4
EPCAM
MIEF2
FLII
SKA2
PRRC2B
PRR11
ZNF221
TBL1XR1
NAA60
MMP15
LAMP1
SLC37A4
DUS3L
CRYBA2
CASP9
SH2B2
ERVW-1
DDX52
TTC6
MGAT5B
FOXA1
RAB9B
PPIA
KLHL30
ADPRHL1
TAGLN2
RESF1
TBL1X
DGAT1
ARHGAP27
ZNF292
PODXL
PSME1
CGB2
BCAS1
AGXT
BMP4
ZNF566
VGLL1
CTH
CLN3
CD68
ZNF845
SLC35E2A
PNMA1
NPPB
NMT1
DCAKD
ANP32E
TFRC
SULT6B1
SSTR5
SPECC1
DPP4
CLCN3
ZNF777
FCSK
ELMOD2
ARHGEF2
STAU1
KRTAP2-2
WWC2
UBB
RNF223
RAPGEF2
NR2F2
ETV6
CSF2RB
CCDC130
ATG14
ZNF263
SMPDL3A
PRR19
PHLDA1
PAFAH1B3