ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478469 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◣ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
SIRT4
SIX2
SLC7A2
NPAS4
POLG2
RBL2
CCDC200
H2BC5
SRI
ADGRF4
C12orf57
H3C15
H3C14
H2AC19
H2AC18
PFDN4
C1QTNF6
RGS22
SCRIB
H2BC4
H2AC6
SMIM6
PLAGL1
FLOT1
SETD5
ZNF337
GSTA4
PSMD6
ZC3H10
NRAS
SLC45A4
BCAS3
NCOA3
TRIM37
PARP2
STX16
H1-3
H2BC11
H2AC11
GREB1
FOXJ3
ARID4A
ARNTL
THOC6
HCFC1R1
ZNF331
MACC1
H1-2
SMARCD2
HEXIM1
PPP6R3
APPBP2
PLEKHG2
RBBP8NL
KMT2E
RNFT1
RP1
YWHAZ
ZMYND8
OARD1
NFYA
H2AC16
H1-5
AKR1E2
CLTC
H2BC21
H2AC21
H2AC20
GRHL2
TRIB1
P4HB
ZNF76
USP32
HTR5A
RFESD
LSMEM1
TRIQK
H4C8
LAPTM4B
PPM1D
NFX1
FBXL18
MPND
SPTSSB
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
METTL25
CCDC59
POLDIP3
POLR1H
BRIP1
KIAA0319
POLD1
TFF1
VPS26C
CYP3A43
TPD52L2
PPP4R3A
FREM2
KRTAP3-1
SRSF5
TRMT12
ERP27
TUBD1
RPS6KB1
CUL7
SNAPC5
USP42
SPATA2
RAD23A
C1QTNF9
USP36
TMPRSS4
MICOS10-NBL1
MICOS10
EIF2D
CREM
MAZ
PFKFB3
CDS1
ZBTB4
POLR2A
DHX40
ALDH3B2
ZNF217
XKR7
SKA2
PRR11
C3orf14
NAA60
SLC25A24
TIPARP
MRPS28
SLC37A4
ARNT
CASP9
H2AC15
ARAP1
H2BC15
PIK3R3
TTC6
FOXA1
SEPTIN9
NXF1
PPIA
RTEL1
TAGLN2
TBL1X
DGAT1
CBWD5
CBWD3
CS
BCAS1
LYRM1
CD68
MIS12
DERL2
PNMA1
ANP32E
ZC3H6
TFRC
SSTR5
ISG20
PIK3C2G
SRSF7
ACOT2
POR
RNF223
ATG14
PAPOLA
H4C14
PHLDA1
SLC25A51
ESYT3
CCDC138
H3C13
H2BC18
DSTN
BFSP1
FAM161B
COQ6
CSKMT
C11orf98
HOPX
PPP5D1
CALM3
DCLRE1B
AP4B1
CSTF1
AURKA
CYB561
CALM2
RPS9
CIB3
LNX1
RBM48
PEX1
H4C5
CYB5R4
INTS2
CUL9
SYCE2
ARL6IP1
RELT
CDC42SE1
U2SURP
H3C7
SEMA5B
PRUNE1
MINDY1
CSRNP2
CNOT8
BCAS2
RHOBTB2
LSM14A
FAM53C
CDC25C
RTF2
TLE3
IRF9
TDRKH
STAT6
IVNS1ABP
DNPEP
DDX59
SRCAP
LSM10
LOC730183
TMBIM6
SALL4
HES4
CBWD6
POLR2J
ARFGEF2
ARIH1
ZNF33A
PSMB10
FAM227B
DTWD1
HSPB1
MYC
COX16
CHMP4A
MGLL
LIMA1
PSMC5
FTSJ3
ZNF34
RBM3
LGMN
CHD4
IFT43
TEX14
RAD51C
H2BC12
H2AC12
RPLP0
WNT1
H2BC8
NBN
PRKRIP1
ZNF609
THTPA
THEM4
WWOX
P2RX7
DOLPP1
HSF1
BOP1
ZFAND6
SPIRE2
PCK2
NRL
MTA3
KCNG3
HNRNPA2B1
DLG2
H2AX
TMEM126B
GTF2H2
DBR1
ATP1A1
RNF224
ST3GAL4
HEXIM2
COPS7A
MINDY4B
USP15
TMTC2
BARHL1
IMPDH2
CATSPER3
LAPTM4A
CEP63
ANAPC13
DENND2C
ZNF425
ZNF398
MYLIP
ARSD
ANKRD36
SMG8
PLK2
CCNT1
EIF1
TUFT1
DHPS
TSGA10
SECISBP2
C2orf15
NIPSNAP1
TUBA1C
TLCD2
PIP5KL1
B4GAT1
TMEM126A
HBP1
VEZF1
TTLL6
PYGO2
LOC101928120
FAM131A
ABCB8
MRPS23
FUS
TNPO1
KPTN
DMXL1
MYL6
VPS45
TFAP2C
SCFD1
CLBA1
ATP2B1
RXRA
FAM220A
MRPL21
IGHMBP2
CPPED1
SCAMP3
HNRNPH1
H4C11
CPLX2
PA2G4
KIF26A
AARS2
TOMM40
SGF29
NADK
TRIP4
RAB11A
KLF10
EIF2AK2
MAN2C1
HIPK1
ANKRD36C
METTL2A
ZNF3
PMEPA1
CYRIB
RPL38
CHD1
AKAP8
RPS20
RABGAP1
ELP5
DDX5
CTDNEP1
UTP18
MBTD1
EIF2AK3
CCNL1
TACO1
CEP95
IDI1
NDUFC2-KCTD14
NDUFC2
FN3K
CHCHD5
PTP4A1
UBE2B
CDKL3
PDCD4
FZD1
CCDC174
RNF43
H4-16
ZCWPW1
MEPCE
COMT
SPATC1L
RBBP5
CSDE1
RCCD1
GTF2H2C_2
GTF2H2C
FCF1
AREL1
POLR2J3
LEKR1
EBAG9
EDC4
DSTYK
CYP51A1
SFT2D3
DAPK3
H4C15
RNF130
PPP2R5C
TTLL3
ID1
CASP7
YJU2
PSMG1
NANP
GDPGP1
CIB1
NME1
MAPK1IP1L
PDE8A
NAT14
STRADA
ZNHIT2
ZNF225
USPL1
SLC50A1
RCOR1
PDCL3
HMGB1
TBX2
CYB561D1
ZFP1
MIS18BP1
MEMO1
FAM214A
EIF3E
DDX42
CCDC47
GTF2H4
TPD52L1
C16orf95
AFF1
PSMD12
CLK3
PHC3
TPK1
TIMMDC1
HOMER1
FAM43A
SREK1
FANCI
KRT13
PAIP2
TEDC1
NAT10
GABPB2
CDC25B
RNF32
GBE1
CHRM4
MTMR4
GFM1
MFSD14C
AMZ2
WDHD1
TM9SF4
SOCS4
CRELD1
CLUAP1
EPS8
ZFAT
ZKSCAN2
ISY1-RAB43
ISY1
KAT5
CRNKL1
CFAP61
NOL11
SVIL
SSBP1
STK11IP
SNX17
EIF2B4
NBPF15
IPO4
ECI1
TDRD5
OSCAR
NDUFA3
MRPS7
GGA3
DNAJC25-GNG10
DNAJC25
BOD1L1
GPRC5A
SRA1
WDR4
RPP21
EED
TRIM45
RPS29
CLPB
MAPK6
RNF103-CHMP3
RMND5A
ACYP2
TTC5
GPSM3
HEATR6
NOP16
HIGD2A
FAM136A
UNC13D
TNFAIP1
IFT20
STAT1
USP2
ADPGK
YTHDF2
MAVS
EMC2
DUS2
DDX28
ILF2
CPE
PDE7A
FBXO34
MTRNR2L8
HSD17B4
MTRNR2L2
CCDC141
TMEM52B
ITGAM
ANKRD23
CRPPA
RABGGTB
SLC10A6
ENTPD1
COLEC12
PKIB
ANKRD1
SLC7A6
SH3BP4
PRKCZ
SH3YL1
OLFML1
EID2
FGD3
TRPM6
SH2D4A
ZNF749
TMEM245
CCR5
ZNF343
CLCN4
LETMD1
BABAM1
NR4A1
PLAAT5
RGPD2
RGPD1
C6orf163
WBP1L
P2RX6
LHX8
POU5F1
INSL4
ZNF641
SLC7A9
GABRR3
MTRNR2L9
IQGAP2
TTLL7
STS
BIN1
SLC7A7
ITGB6
RASSF2
SNX27
FAM110A
CTNNAL1
SLC25A34
TACC2
LGR5
KDM5C
HOATZ
BTG4
KRT8
PLD5
UIMC1
FUT3
SUPT7L
SLC4A1AP
PIP4P2
SCNN1A
GALNT11
DEPP1
RHOH
LHX4
ORAI3
HSD17B1
ANXA3
NPL
IGFL4
DAW1
CLPSL2
SLC25A26
SEH1L
GRHL3
MPP4
SMARCA2
TRIM22
TNFAIP8
NANOGNB
FERMT1
TTLL4
NRBP1
CDC14B
DLC1
TNIP3
LRRC14B
DNMT3A
BRD4
EXPH5
PPARG
ZFPM1
FMN1
DNAJB2
RFLNA
SLC4A8
GALNT6
CSGALNACT1
PCCB
PIK3C2A
APBB1IP
KIFC3
ARHGAP45
SHROOM3
MTUS1
ITGA2
PTPRD
DOT1L
TLK1
ADGRG1
NCOA1
KMT5C
FGFRL1
AMOTL2
PICALM
DUSP21
SPR
MAGI1
TNRC6A
LACTBL1
DENND6A
CALHM4
ZNF444
EHBP1
CCDC88C
SCAMP4
MICB
ADAT3
PARP4
C11orf94
TNFAIP3
SLC39A1
HERC4
BAIAP2
TMPRSS11F
FBL
PPFIBP2
ALDH4A1
TREML1
MORC4
TMCO6
NEURL3
ULK2
EDNRB
EHMT2
C2
CSF1R
SLC12A6
RNF19A
HSPB7
PEX3
ADAT2
RIOX1
PPP2R3A
PDCD1LG2
C9orf131
GOLGA8B
KIAA1586
TENM3
HDAC5
KRT71
FAM107B
ANXA6
BATF
NEBL
IGFL2
MID1
SYTL5
TRIM16L
MEF2A
LATS1
GRAMD1B
S100A16
ADAP1
SULT1A4
SULT1A3
ING2
SASH1
PPEF1
AP5B1
ZNF552
NSFL1C
NKIRAS1
SEPSECS
NRK
PGC
VNN2
TFDP2
MPO
ISM2
SPINK4
GSTO1
MKRN2OS
ARHGDIB
ZNF335
SPECC1L
HK1
ZMYND11
KLF7
C1QBP
WDR87
SIPA1L3
PRDX3
NAPEPLD
ZBED9
RPF1
RFWD3
RANBP2
SGK1
PLS1
ADIPOR1
MYO18A
MAN1A1
TIGD2
NHSL1
CWF19L1
FKBP4
MEF2D
OR2B11
ALPK3
JUN
KLF6
PLXNB2
ZNF451
PPP1R9A
PDE4DIP
IL22RA2
CRISP1
MAB21L4
CHD3
RHOB
KYAT1
DACT2
PINK1
CRY1
CD59
MPP1
HTRA4
NDUFA4
CEP85
BCAR3
TMPPE
SMC3
LMO7
GLB1
USP11
GNAI1
UBE2V1
TMEM9
PTN
EPHA4
ZNF799
ARHGEF3
YIPF6
MYLK3
TXNRD1
AGAP3
IL31RA
TNS1
SPHK1
HMCN1
RAPGEF6
PES1
GMEB1
YEATS2
LDAH
FOCAD
FAM83A
RPIA
PNKD
PALM3
MBOAT2
EPB41L1
DUSP3
ZFHX3
RIOK2
VIM
PTK2
CHRNB1
SLC44A2
ROPN1B
SDCBP2
TMEM68
TGS1
RILPL1
P2RY6
HSPA9
EIF3D
MYBL2
FUT8
CMC1
NEU1
CCNG2
SLC13A3
PRSS8
PRORP
PPP2R3C
TBC1D15
RTN2
LARS2
RPN2
MROH8
DUSP9
VTCN1
TRIM34
THAP1
TGM2
LOC644090
ACSL1
LNP1
SPAG17
LPP
GJA5
TBC1D22A
SUN1
PDGFB
TMIGD2
SLC9A1
SRP68
PARD6B
LSR
AMOT
SLC29A1
DDB2
SLC6A4
SLFN12
RASGRP2
LOC112694756
NAA38
CYB5D1
BLCAP
GPRC5C
CLCC1
RNF144B
HNF4G
ABLIM1
CTDSP1
TMEM211
RASGRF1
ALAD
CLOCK
AXL
ART5
GSTA3
CYS1
GPR146
CALM1
TNKS2
RAB30
LGALS8
EDEM2
FBXW12
ZNF155
FBXO32
RAD9A
TMEM267
NMI
ACTR1B
PCYT2
NPTN
TGM1
PDXDC1
ADNP
TNFRSF19
NDUFB6
BMPR1A
RNPEP
OSGIN2
MTARC1
GAR1
BRI3
MED28
DACT3
ZZZ3
CRISPLD2
AMD1
TRIML2
TLN1
RAD50
CRYGC
CREB3
CAPN8
LATS2
WT1
STARD13
RBM45
TGIF1
RIMKLB
MGST3
SMPDL3B
DDX41
CFAP45
ERCC6L2
CKB
BRMS1L
ENTPD5
CYSLTR2
BBOF1
MREG
CNN3
BRD3
CCDC183
FAM104A
TPM1
PDCL
MILR1
LRRC75A
FBP1
DTD2
LMBRD1
FSCN1
C11orf95
SIGIRR
SF3B4
DGKD
AKAP1
GNA12
AFAP1
SLC49A4
HSPBAP1
ZER1
MRPS24
BTRC
RPL6
PTPN11
DYSF
POLB
SUPT4H1
FAM162B
AP2A1
TBC1D24
GLDN
FGD4
ASAP1
WDR83
MAN2B1
UBXN4
GAS2L3
FER
MTR
CCNI2
ATG9B
DDX50
CAMK2D
MYL6B
QRICH1
PPP6R2
FAM169A
DCTN1
BZW2
ABCA5
IMPA1
FBXO5
ANK3
CEP78
UNKL
GET4
EPCAM
MIEF2
FLII
PRRC2B
ZNF221
TBL1XR1
MMP15