ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: MSX2 | STRING
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◣ MSX2: STRING

BMP4
SP7
FOXN1
PPARG
WDR74
RBL2
MTRNR2L8
CCDC200
RNF43
NIPSNAP1
HSD17B4
MTRNR2L2
SIRT4
CCDC141
TMEM52B
ITGAM
SIX2
ANKRD23
CRPPA
RABGGTB
MIS12
DERL2
SLC10A6
KRTAP3-1
ENTPD1
ATP2B1
COLEC12
PKIB
ANKRD1
SLC7A6
LNX1
SH3BP4
PRKCZ
DLG2
SH3YL1
SLC45A4
OLFML1
EID2
FGD3
TRPM6
SH2D4A
ZNF749
TMEM245
CCR5
CLTC
ZNF343
LSM14A
H2BC5
CLCN4
LETMD1
BABAM1
NR4A1
PLAAT5
RGPD2
RGPD1
C6orf163
ERP27
WBP1L
P2RX6
LHX8
POU5F1
INSL4
ZNF641
PFDN4
SLC7A9
ADGRF4
POLG2
CCNL1
GABRR3
MTRNR2L9
NPAS4
IQGAP2
TTLL7
STS
BIN1
SLC7A7
C12orf57
LSMEM1
ITGB6
RASSF2
FREM2
SNX27
BCAS3
SRI
FAM110A
RGS22
CTNNAL1
SLC25A34
TACC2
LGR5
KDM5C
HOATZ
BTG4
ABCB8
KRT8
PLD5
H3C15
H3C14
H2AC19
H2AC18
UIMC1
FUT3
SUPT7L
SLC4A1AP
SCRIB
TRIM37
PIP4P2
SCNN1A
GALNT11
PSMD6
DEPP1
RHOH
LHX4
ORAI3
APPBP2
H2BC4
H2AC6
HSD17B1
ANXA3
NPL
CLPB
IGFL4
SLC7A2
DAW1
NRAS
H1-2
CLPSL2
SLC25A26
SEH1L
H2BC21
H2AC21
H2AC20
GRHL3
MPP4
H4C8
H2BC11
H2AC11
ACOT2
SMARCA2
TRIM22
STX16
TNFAIP8
NANOGNB
FERMT1
TTLL4
NRBP1
CDC14B
POLR1H
DLC1
TNIP3
LRRC14B
DNMT3A
BRD4
EXPH5
ZFPM1
NCOA3
FMN1
DNAJB2
RFLNA
SYCE2
SLC4A8
GALNT6
CSGALNACT1
PCCB
PIK3C2A
C1QTNF6
APBB1IP
KIFC3
ALDH3B2
ARHGAP45
SHROOM3
MTUS1
ITGA2
PTPRD
DOT1L
TLK1
ADGRG1
NCOA1
WWOX
SMIM6
METTL25
KMT5C
FGFRL1
CCDC59
CS
AMOTL2
THOC6
HCFC1R1
PICALM
DUSP21
SPR
MAGI1
ZNF76
TNRC6A
LACTBL1
SETD5
DENND6A
PPM1D
CALHM4
ZNF444
EHBP1
CCDC88C
TRIM45
GREB1
LIMA1
NBN
FOXJ3
TUBD1
RPS6KB1
USP32
SCAMP4
MICB
ADAT3
RNFT1
PARP4
C11orf94
TNFAIP3
SLC39A1
HERC4
BAIAP2
TLE3
SMARCD2
TMPRSS11F
FBL
PPFIBP2
ALDH4A1
ZC3H10
TREML1
MORC4
TPD52L2
TMCO6
ZMYND8
NEURL3
ULK2
EPS8
EDNRB
EHMT2
C2
CSF1R
BRIP1
SLC12A6
OARD1
NFYA
ATP1A1
VPS26C
RNF19A
HSPB7
PEX3
HEXIM1
CDS1
ADAT2
YJU2
RIOX1
PPP2R3A
PDCD1LG2
H2AX
C9orf131
GOLGA8B
KIAA1586
TENM3
HDAC5
ARID4A
KRT71
PIK3C2G
FAM107B
ANXA6
H2AC15
BATF
NEBL
IGFL2
H4C5
ZBTB4
POLR2A
MAZ
MID1
SYTL5
TRMT12
TRIM16L
NFX1
MEF2A
H3C13
H2BC18
DHX40
LATS1
HTR5A
GRAMD1B
S100A16
EIF2D
ADAP1
SULT1A4
SULT1A3
IFT43
ING2
SASH1
PPEF1
AP5B1
ZNF552
NSFL1C
NKIRAS1
SEPSECS
USP36
NRK
PGC
VNN2
TFDP2
MPO
LAPTM4B
ARFGEF2
ISM2
SPINK4
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
H2AC16
TRIP4
GSTO1
ZNF331
MKRN2OS
MPND
ARHGDIB
ZNF335
SPECC1L
PRUNE1
MINDY1
HK1
ZMYND11
KLF7
PLAGL1
FLOT1
C1QBP
WDR87
SPTSSB
SIPA1L3
POLR2J3
PRDX3
NAPEPLD
ZBED9
RPF1
RFWD3
RANBP2
SGK1
PLS1
ADIPOR1
MYO18A
TEX14
SLC25A24
RAD51C
MAN1A1
H2BC12
H2AC12
TIGD2
ZNF337
NHSL1
CWF19L1
PPP6R3
FKBP4
MEF2D
POLD1
OR2B11
ALPK3
JUN
GSTA4
KLF6
POLDIP3
TFF1
H3C7
PLXNB2
PAPOLA
ZNF451
PPP1R9A
PDE4DIP
IL22RA2
CRISP1
MAB21L4
CHD3
RHOB
KYAT1
DACT2
SNAPC5
PINK1
CRY1
CD59
H4C14
RTEL1
MPP1
HTRA4
NDUFA4
CEP85
BCAR3
PSMG1
TMPPE
SMC3
LMO7
GLB1
USP11
ISG20
GNAI1
UBE2V1
TMEM9
ZNF217
PTN
GPRC5A
PIK3R3
EPHA4
ZNF799
ARHGEF3
YIPF6
MYLK3
TXNRD1
SRSF5
AGAP3
IL31RA
TNS1
SPHK1
KMT2E
HMCN1
ARNT
ARL6IP1
YWHAZ
RAPGEF6
PPP5D1
PES1
PARP2
CALM3
USP42
GMEB1
TNFAIP1
SEPTIN9
IFT20
FAM53C
CDC25C
YEATS2
LDAH
FOCAD
FAM83A
RPIA
PNKD
PALM3
MBOAT2
H1-3
EPB41L1
DUSP3
INTS2
ZFHX3
RIOK2
VIM
PTK2
FBXL18
CHRNB1
SLC44A2
U2SURP
ROPN1B
SRSF7
SDCBP2
TMEM68
TGS1
RILPL1
P2RY6
HSPA9
EIF1
TIPARP
NXF1
EIF3D
MYBL2
DCLRE1B
AP4B1
FUT8
CMC1
NEU1
CCNG2
SLC13A3
MAN2C1
ARNTL
SPATC1L
PRSS8
PRORP
PPP2R3C
C3orf14
TBC1D15
RTN2
P2RX7
LARS2
LAPTM4A
ARAP1
YTHDF2
RPN2
PTP4A1
MROH8
DUSP9
VTCN1
TRIM34
THAP1
TGM2
LOC644090
ACSL1
LNP1
SPAG17
SCAMP3
LPP
IMPDH2
GJA5
FAM227B
DTWD1
TBC1D22A
POR
SUN1
PDGFB
CYB561
CALM2
BCAS2
VEZF1
TMIGD2
SLC9A1
ZC3H6
SRP68
CUL7
RBBP5
PARD6B
MACC1
LSR
AMOT
SLC29A1
DDB2
XKR7
SLC6A4
SLFN12
RASGRP2
MRPS28
LOC112694756
STK11IP
NAA38
CYB5D1
PFKFB3
LYRM1
IRF9
BLCAP
MRPS23
H4C15
GPRC5C
CLCC1
RNF144B
HNRNPH1
HNF4G
HIPK1
TTLL3
RXRA
CSDE1
LEKR1
ABLIM1
CTDSP1
TMEM211
RASGRF1
AMZ2
ALAD
CLOCK
DSTN
CSKMT
C11orf98
BFSP1
CBWD5
CBWD3
AXL
H4C11
ART5
NANP
GSTA3
CYS1
GPR146
CALM1
TNKS2
RAB30
TDRKH
PLEKHG2
LGALS8
EDEM2
CHMP4A
RPLP0
RBBP8NL
KRT13
H2BC15
ARIH1
FBXW12
ZNF155
FBXO32
RAD9A
TMEM267
RP1
NMI
ACTR1B
TUFT1
PCYT2
NPTN
CPLX2
TGM1
PDXDC1
ADNP
TNFRSF19
NDUFB6
RBM48
PEX1
H4-16
H1-5
BMPR1A
RNPEP
PRKRIP1
OSGIN2
MTARC1
GAR1
BRI3
RPS9
MED28
DACT3
AKAP8
ZZZ3
CRISPLD2
AKR1E2
AMD1
TRIML2
TLN1
RAD50
CRYGC
CREB3
CAPN8
LATS2
WT1
STARD13
PA2G4
MYL6
NOL11
RBM45
GRHL2
DENND2C
TRIB1
TGIF1
P4HB
GTF2H4
FUS
RIMKLB
RFESD
MGST3
TRIQK
PSMC5
MAPK6
FTSJ3
FAM220A
EBAG9
SMPDL3B
ANKRD36C
UTP18
METTL2A
MBTD1
CBWD6
DHPS
DDX41
CFAP45
ERCC6L2
DDX59
CKB
BRMS1L
VPS45
ENTPD5
CYSLTR2
BBOF1
MREG
CNN3
BRD3
CCDC183
FAM104A
DOLPP1
ZFAT
FAM43A
TPM1
KAT5
SMG8
PDCL
MILR1
LRRC75A
KIAA0319
FBP1
DTD2
TOMM40
HSF1
BOP1
ST3GAL4
LMBRD1
FSCN1
C11orf95
SIGIRR
SF3B4
DGKD
AKAP1
GNA12
AFAP1
SLC49A4
HSPBAP1
ZER1
TACO1
MRPS24
CYP3A43
BTRC
RPL6
RNF130
PTPN11
DYSF
STRADA
PPP4R3A
POLB
MRPL21
MEMO1
IGHMBP2
SUPT4H1
FAM162B
EDC4
TBX2
AP2A1
TBC1D24
GLDN
FGD4
ASAP1
WDR83
MAN2B1
UBXN4
SPATA2
RAD23A
GAS2L3
FER
C1QTNF9
USP2
MTR
CCNI2
ATG9B
DDX50
CAMK2D
MYL6B
UBE2B
TMPRSS4
QRICH1
CDKL3
PPP6R2
MICOS10-NBL1
MICOS10
FAM169A
DCTN1
BZW2
ABCA5
IMPA1
FBXO5
CREM
ANK3
ZCWPW1
MEPCE
CEP78
UNKL
PHC3
IDI1
GET4
EPCAM
RCCD1
MIEF2
FLII
SKA2
PRRC2B
PRR11
ZNF221
TBL1XR1
NAA60
MMP15
LAMP1
SLC37A4
NME1
DUS3L
SSR3
CRYBA2
CASP9
SH2B2
ERVW-1
DDX52
TTC6
MGAT5B
FOXA1
RAB9B
PPIA
NBPF15
MAPK1IP1L
KLHL30
ADPRHL1
TAGLN2
SNX16
RESF1
LLGL2
DSTYK
TBL1X
DGAT1
ARHGAP27
ZNF292
PODXL
PSME1
CGB2
BCAS1
AGXT
ZNF566
VGLL1
CYP51A1
CTH
CLN3
CD68
ZNF845
SLC35E2A
PNMA1
NPPB
NMT1
DCAKD
ANP32E
ADPGK
TFRC
SULT6B1
SSTR5
SPECC1
EHMT1
DPP4
CLCN3
ZNF777
MVK
FCSK
ELMOD2
CYB561D1
CDH18
ARHGEF2
SLC35C2
RAE1
STAU1
PAIP2
KRTAP2-2
WWC2
UBB
RNF223
RAPGEF2
NR2F2
ETV6
CSF2RB
CCDC130
ATG14
ZNF263
SMPDL3A
PRR19
PHLDA1
PAFAH1B3
DAB2
NR1D2
SLC25A51
ESYT3
C6orf226
AFF1
PCGF6
CDKL1
CCDC138
ZNF114
FAM161B
COQ6
AXDND1
TBX3
HOPX
EML5
TEX22
SPTBN4
RNF13
PTPN1
MAP11
L1CAM
INO80
CSTF1
CAMLG
BRCA1
BLVRB
AURKA
ZNF318
EXOSC6
DEAF1
C4BPB
ATF6
KRT23
DHDDS
CIB3
TMEM154
RGL1
MME
IAH1
GMFB
UFD1
RPL12
PPP1R12C
MXD3
LRSAM1
CDC45
THAP5
DNAJB9
CCNP
TMEM18
FURIN
CYB5R4
VTN
TRIM33
GPR1
CUL9
ABCA3
STAT1
NUCB2
TPRA1
RELT
PRIM2
PLEC
MICU2
COIL
CDC42SE1
ATXN7
TMC4
RPS6KA4
ROPN1
MFSD10
KRAS
KIF3A
TMEM31
NT5C2
ITGB3
TOM1
SUPV3L1
SEMA5B
R3HCC1L
KDM4C
DNMBP
SOWAHB
SOS2
POLR3B
NRBF2
CSRNP2
CNOT8
CD8A
RNF114
RHOBTB2
PLLP
NR1H3
KLF5
HMGA1
GXYLT1
ZNF587B
WEE1
SOCS2
SLC44A1
SLC25A36
RTF2
RHBDD2
RBM19
QPRT
OSBPL2
DENND2A
ATP5F1E
TNFSF12-TNFSF13
TNFSF12
STX7
STAT6
PYROXD2
MRPL58
IVNS1ABP
DNPEP
TADA3
SKIL
PITRM1
NSG2
EPN1
CSNK1E
ARPC4-TTLL3
ARPC4
ADCK1
TMEM144
SRCAP
NUDCD3
LSM10
LOC730183
IPMK
C1orf105
ZNF433
TMBIM6
SALL4
HES4
EVI5
CGB5
ZBED5
RANBP3
MRTFA
MPV17
DHX30
TKFC
SLC6A9
SGK3
RRM2B
RNF44
POLR2J
GLTPD2
FZR1
FIS1