ChIP-Atlas: Target genes

Potential target genes for RBM39

Query protein: RBM39
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10977195 | Hep G2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RBM39's Target genes

◢ RBM39: Average

◢ SRX10399318: Breast epithelium

◢ SRX10399319: Breast epithelium

◢ SRX10977194: Hep G2

◣ SRX10977195: Hep G2

◢ SRX4708037: Hep G2

◢ SRX4708085: K-562

◢ SRX6784056: K-562

◢ SRX6784057: K-562

◢ SRX7642859: Mammary epithelial cells

◢ SRX7642860: Mammary epithelial cells

◢ RBM39: STRING

PMF1-BGLAP
PMF1
SNRPB2
B4GALNT3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
WDR74
STX5
NOMO3
ABCC6
EAPP
STX16
EXOC2
MTRNR2L8
PSMF1
IQSEC3
MTRNR2L1
NSFL1C
NOTCH2
TM9SF1
IPO4
METTL9
PDE6D
COPS7B
H4C12
H4C11
H2BC14
H2AC14
EIF1
CPPED1
NOMO2
SRSF6
TMEM242
FRG2C
SPATC1L
MED23
NOMO1
UNK
H3-3B
CNOT3
LOC102724770
DGCR6
DHRS2
CCDC88A
DDX1
CLTC
NPIPA3
NPIPA2
PLA2G10
MRPL44
PALB2
DCTN5
H4C9
H2BC11
H2AC11
KIF5C
KANSL3
FER1L5
C1orf198
PSMD3
POLR3E
H2BC15
H2AC15
ZC3H6
UNC45B
NLE1
SCAND1
H2BC5
H1-4
SLC39A3
FRG2
AAR2
H4C14
H3C15
H3C14
H2AC19
H2AC18
H4C15
NGB
WTAP
SOD2
NPAS4
CBWD5
CBWD3
CBWD6
MANBAL
PEX3
ADAT2
MAT2A
MTF2
GTF2H2
MTIF2
HSPE1-MOB4
HSPE1
HSPD1
PET117
KAT14
UBFD1
EARS2
SCFD1
ZNF76
RPS12
TGM1
RABGGTA
UBC
SMARCD2
ZCCHC4
TACO1
CCDC200
IL17D
NUBP1
TMEM230
PCNA
PCK2
NRL
ACSL3
H2BC12
H2AC12
SCML1
PRDX1
DTD2
SLC35C2
RPL5
MTRNR2L9
PLEKHM3
SCGB1C2
SCGB1C1
ODF3
HECTD1
AHSG
ATF7IP2
RPS15A
FUS
DPY19L4
ACYP2
RMDN2
METTL25
CCDC59
UBE2F
C6orf226
TBC1D3J
TTPAL
SNRPB
CDK5RAP1
SNX16
MTERF4
MRPS23
MOB4
E2F6
STX18
PRMT5
ZKSCAN2
ZBTB4
SLC35G6
POLR2A
TSSK4
MDP1
CHMP4A
EDC4
NXF1
EXOSC6
FRA10AC1
CTNNB1
PLK1
RGPD8
RGPD6
RGPD5
PPP1R3E
BCL2L2-PABPN1
BCL2L2
RPL37A
NME1
NANP
MIA2
SLC25A21
SYS1
ZCCHC3
C20orf96
ZNF384
GTF2H2C_2
GTF2H2C
SRSF11
SRCAP
LOC730183
GTF3C3
C2orf66
UNC50
COA5
H2BC21
H2AC21
H2AC20
MARCHF7
MRPL39
TRPC4AP
DCAF10
PKP4
CCDC148
H3C12
H2BC17
H2AC17
TSGA10
JPT1
TINF2
NEDD8-MDP1
NEDD8
GMPR2
SLX4IP
MKKS
WDR31
BSPRY
HDAC4
SRSF2
MFSD11
ATF4
STMN3
RTEL1
AP1G2
PCIF1
H3C10
H2BC13
H2AC13
NUF2
ATXN2L
WDR11
MRPL52
MMP14
PIP4K2B
RPS20
MTMR2
STAT3
DUX4
FAM53C
CDC25C
RPSA
RBM39
HNRNPA2B1
CBX3
HEATR5A
TTI1
RPRD1B
PPP4R3B
GDAP1
MAML3
RWDD1
TDG
C12orf73
ZNF219
TMEM253
SEC13
STAT1
KIAA1586
ACIN1
LMLN2
C14orf119
TRIP4
PCLAF
BMS1
MRPL58
RPL37
CARD6
COMMD1
CCT4
WASHC1
WFDC3
DNTTIP1
NCOA3
RPS3A
CSNK2A1
RPS3
KDM8
OXA1L
DHRS4L1
MTHFD2L
ARL6IP1
MRPS31
SLC9A1
ATR
CTR9
HAUS4
IRF9
SLC9A8
CCDC97
ADAMTS9
PGBD1
DMAP1
MTHFD2
NAGK
SEC23A
H4C2
H3C2
H2AC4
BRD2
ENOSF1
ANKRD36C
CFL2
HSPA5
NDUFC2-KCTD14
NDUFC2
MAPK11
VAMP4
ERCC6L2
C16orf89
ALG1
PBK
LIMS1
RPL31
TMEM216
ZSCAN12
ANKRD36
DCPS
ZNF705E
TOP3B
LRRC59
RPL27A
ATP5MC2
RPN2
MROH8
HUS1
RPLP0
GCN1
YARS1
S100PBP
EIF3C
NUDT7
DGUOK
TRMT11
OR2T1
HERPUD1
C1orf115
CBWD1
CSTF1
AURKA
RTN4RL1
DPH1
AHCY
TATDN3
NSL1
PTCD1
CPSF4
ZWILCH
SNAPC5
RPL4
ANKRD36B
TAF15
GTF2A1
SMARCE1
RBBP6
TMEM170A
RUSF1
KPNB1
EIF2D
NBPF1
TP53I3
SF3B6
FAM228B
ZNF248
SERINC3
PKIG
LIMCH1
CALM2
NDUFS7
TRAPPC6B
PNN
SDHAF2
CPSF7
USPL1
HMGB1
PCF11
ATG10
MTRNR2L2
MSH3
DHFR
TIGD1
EIF4E2
GFOD2
C14orf93
ZNF609
IST1
KMT2A
RBSN
NABP1
SUPT5H
RPS16
DARS1
SLC44A1
C10orf88
POLG2
DDX5
CEP95
SMIM12
RAB37
NDUFAF3
IMPDH2
DALRD3
NT5DC1
G2E3
TEP1
NUP160
ZSCAN9
SULT1A4
SULT1A3
SLX1B
SLX1A
BOLA2B
BOLA2
CORO1A
GCFC2
TUBGCP3
THUMPD1
COG2
POLR2J3
NACC2
PSMD14
TMEM18
BOLA2-SMG1P6
SPATA6L
PLPP6
SRSF3
FAM227B
DTWD1
GTPBP10
DCP1A
MEMO1
ZFHX2
THTPA
GTF2B
TAF3
RPLP1
AJUBA
STAM2
MICU2
CCNL1
TOB1
SECISBP2L
ZCCHC9
KCTD3
HEXIM2
DYNLRB1
RBM12
CPNE1
INO80C
TEX9
RFX7
PELO
ITGA1
PSMC5
FTSJ3
PHIP
MAPK1IP1L
TRIB3
RPL19
CACNB1
PRADC1
CCT7
TMEM41A
CCNC
UBE2S
SYT7
NDE1
MARF1
VWA8
POMZP3
GOPC
CPLX2
KPNA1
DBNDD2
HSPA1B
CYCS
FAM98B
MRPL3
ASXL1
CHGB
DCAF11
RBL1
ZNF337
VRK2
TRIP12
FBXO36
SSX5
RPS23
ATP6AP1L
ATF3
EIF4B
XRN2
PARPBP
NUP37
HDDC2
THAP9
SEC31A
KCTD18
RBBP9
MST1
PEX14
DFFA
RAF1
SLC39A10
TBC1D19
LDHA
DDX19B
AARS1
MRPL35
IMMT
SDR39U1
NUDCD3
RPL17-C18orf32
RPL17
C18orf32
ERGIC3
TOP1
H1-2
C2orf88
CFAP20
KAT8
BCKDK
PIP4P1
PNP
LRRC37B
KIF21A
PCTP
MTERF1
UTP4
DERPC
CHTF8
RSPH3
LARP1
SRSF7
UBOX5
FASTKD5
SENP1
PFKM
BIRC6
JRKL
CCDC82
CMTR2
SAYSD1
TMEM167B
IER3
FLOT1
RABL2A
BRMS1L
TSNAXIP1
UBAP2L
C1orf43
CCNI
RIF1
GSTA4
ANKRD46
PDRG1
LMNB2
FN1
USP40
ERLEC1
ASB3
SUPT4H1
MOGAT1
ALKBH3
AFF1
EEF1A1
RHEBL1
KMT2D
INO80D
PPP2CB
NOL10
MAP3K2
TOB2
GCLC
ITGB2
KAT7
MRPL2
KLC4
CUL7
KCTD5
PTEN
KLLN
GSTK1
C2CD5
TBPL1
DENR
SNRNP200
CCDC43
TJP3
DHRS4L2
TMEM254
PARP2
CCNB1IP1
RNPS1
DHX35
STX6
RRN3
APOB
SMIM8
GJB7
TTC21B
C6orf136
MRPL16
REXO5
ERI2
CZIB
PRDM7
RAD54L2
SRF
CUL9
SDCBP2
RPIA
TTC6
FOXA1
RHOB
IFNGR1
HINT3
ACVR1
ISOC1
ZFP64
RTF2
GZF1
MAPKBP1
LRRC37A3
CCN2
AGK
SUPT3H
MRPL45
BAZ1A
TBL3
RPS2
RPL3L
RNF151
NDUFB10
KIF16B
RPL23
SEC14L1
SAR1B
DIDO1
INTS2
SKIV2L
NELFE
GOLGA6L9
NDUFAB1
ZNF585B
ZNF383
LRP12
SELENOK
ACTR8
CTNNBL1
DLAT
SURF6
CASC3
RNF103-CHMP3
RMND5A
ZBTB9
TMEM106B
ZNF335
ARHGAP5
MCL1
HNRNPH1
ARHGEF12
PSMA6
STXBP4
COX11
MTX2
SEC62
PRKRA
PJVK
CYP20A1
NUP62
IL4I1
ATF5
PMS1
ORMDL1
PLS1
CUL5
TGM2
LRP6
DBI
C2orf76
ANAPC4
AIG1
EXOC1
TEFM
MIPOL1
AGL
IRF2BP2
NPHP1
MTLN
PPP1R18
DHX16
PGP
CASKIN1
BRICD5
LUC7L3
LTB4R2
LTB4R
CIDEB
KAT6A
PFDN4
AMMECR1L
GINS1
MRPL15
ZNF391
CHEK1
VPS72
PIP5K1A
LANCL1
CPS1
SLC35B3
FAM156B
FAM156A
PPP1R10
MRPS18B
ATAT1
ITGB3BP
EFCAB7
FAM174C
CIRBP
CHMP3
NDUFV2
PNPO
SMIM26
UBXN2B
C16orf95
CMTR1
COL23A1
FAM133B
U2SURP
APBB2
RBM34
BCAS4
THUMPD2
TTLL4
TOMM34
STK4
EIF3CL
HEBP2
LONP2
ABCC11
GNE
USP3
LURAP1L
RABEPK
GSAP
SLC24A1
TRIM25
EIF4G2
VTA1
NMBR
VPS16
PCED1A
PTRHD1
CENPO
RNF39
PPP1R11
POLR1H
NAA20
TMEM177
CPE
NDUFA12
ZNF148
CDS2
SH2B1
FBXO33
BZW1
DCP1B
EIF4A3
SKP1
WBP1
INO80B
TPK1
TRDMT1
SRP54
ATL2
WIPF2
ZNF468
XRN1
TEDDM1
GLUL
PPIH
OTUD7B
TMEM14B
FAM177A1
MRPL53
MOGS
NSF
COL1A1
H4C5
H3C4
H2BC7
H2AC7
H4C4
MRPL40
HIRA
MAIP1
GOLGA6L4
PUS10
PEX13
NPIPB9
VCPKMT
CSNK1D
USP10
SRSF1
DHRS4
PCBP2
KANSL1
LATS1
ADI1
TGOLN2
DNMT3B
UQCC3
LBHD1
CSKMT
C11orf98
DRG2
RNF6
TOMM6
PRICKLE4
FRS3
HNRNPC
TSC1
GFI1B
MRPL21
IGHMBP2
NOP56
TUFT1
RAB5IF
EEF2
MRPS28
TTC12
NKIRAS2
DNAJC7
URGCP
UBE2D4
P4HA1
TLCD1
RPL23A
RAB34
PROCA1
NEK8
C6orf62
GABPB1
NOP14
GRK4
ADPGK
POLR2J
FAM187A
EFTUD2
CCDC103
SEL1L
TRIM37
GDF15
OLA1
MPIG6B
LY6G6C
DDAH2
CLIC1
LRRC25
MSH5
SOS1
ATAD2B
ABCC10
SERPINB6
RRP15
TBP
PSMB1
MAGEF1
CRBN
POLR2C
TIMMDC1
TJAP1
ABCD4
CEP20
HEXB
PANK2
ATG16L1
SNAPC3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
VWA5B2
MAMDC2
DNAJA1
APTX
COQ7
SPHK2
RPL18
FAM83E
TEX14
RAD51C
TDP2
ACOT13
ACTR3
UBR2
GSPT1
C6orf89
STK19
LOC110384692
DXO
C4B_2
C4B
C4A
PIGBOS1
PIGB
ZNF451
PHF3
ZNF23
EPM2A
ETV4
ATXN7
TUBA4B
TUBA4A
STK16
GLB1L
ITCH
CAB39
RDH14
TMEM186
PMM2
KMT5B
USP16
RWDD2B
SMIM13
UBE2L3
FAN1
RALGAPA1
MRPS11
MRPL46
HMGN4
ADAM17
APPBP2
FKBP5
ARMC12
PSMC2
DNAJC2
SLC7A5
NIPSNAP2
RRM1
MAN2C1
SSBP1
SLC35B1
FERMT1
MAT2B
PPIL1
LTV1
NPIPB6
AKTIP
KIFC1
TRNAU1AP
PDE11A
RANBP9
EEF2K
CSE1L
NFATC3
NOP9
DHRS1
NUDCD1
TPT1
REXO2
ZC3H7A
MYH7B
GSS
SEPSECS
STRADA
HSDL2
TNNC2
SNX21
ZNF501
SRP19
INTS12
GSTCD
ZKSCAN8
RTN4
AURKAIP1
POLG
SNX5
MGME1
CITED2
ZC3H15
FAM83D
ZFP1
VSNL1
RAD51AP2
KRT8
KRT18
RPAP2
GLMN
NFAT5
CYP51A1
ASF1B
MRPL24
ACAT2
HMBS
H2AX
DPAGT1
RBM28
THOC1
FLYWCH2
ARID1A
POLR3D
HMGCS1
NUGGC
ELP3
LRRC40
GDF5