ChIP-Atlas: Target genes

Potential target genes for SOX9

Query protein: SOX9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10175283 | PANC-1
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SOX9's Target genes

◢ SOX9: Average

◢ SRX718108: hESC derived pancreatic cells

◢ SRX4065343: hESC derived retinal cells

◢ SRX4065344: hESC derived retinal cells

◢ SRX4065345: hESC derived retinal cells

◢ SRX4065346: hESC derived retinal cells

◢ SRX4065347: hESC derived retinal cells

◢ SRX4065348: hESC derived retinal cells

◢ SRX11220467: HT-29

◢ SRX11220468: HT-29

◢ SRX768290: HT-29

◢ SRX11416753: KARPAS-422

◢ SRX11856133: LNCAP

◢ SRX11856134: LNCAP

◢ SRX11856137: LNCAP

◢ SRX11856138: LNCAP

◢ SRX11856139: LNCAP

◢ SRX11856140: LNCAP

◢ SRX11856141: LNCAP

◢ SRX11856142: LNCAP

◢ SRX359919: LoVo

◢ SRX13867212: MCF-7

◢ SRX13867213: MCF-7

◢ SRX13867216: MCF-7

◢ SRX13867217: MCF-7

◢ SRX10175282: PANC-1

◣ SRX10175283: PANC-1

◢ SRX1510444: VCaP

◢ SOX9: STRING

MTRNR2L2
MSH3
DHFR
RGPD2
RGPD1
MTRNR2L8
EPN1
MTRNR2L1
VPS37B
SPAAR
GPSM3
FRG2C
FRG2
MTRNR2L9
BCL9L
SNX16
FOSL1
SPTBN1
OPRL1
LKAAEAR1
COL23A1
CTDP1
GTPBP6
DUX4
DNAJB1
CYP4F11
IRF2BP2
CHI3L2
LGR6
OR2T1
MICAL2
OSGIN1
CRYAA2
CRYAA
NWD1
MAMDC2
VWA1
MYADM
YBEY
MCM3AP
PMF1-BGLAP
PMF1
NPDC1
ENTPD2
NEUROG3
NOXO1
GFER
SH3KBP1
KIAA0895
ANLN
EGR2
C2CD4D
LINGO1
CFLAR
USP17L11
USP17L18
USP17L17
PLCE1
GAGE8
GAGE2E
GAGE2D
GAGE13
SPATA20
OTUB2
PRR13
GAGE7
GAGE6
GAGE5
GAGE4
GAGE12I
GAGE12F
GAGE12B
CCSAP
AGPAT3
TLCD5
MTF2
UCKL1
ZNF780B
HMX3
LOC102725023
KIR2DS4
KIR2DS2
KIR2DL3
KIR2DL2
KIR2DL1
ARHGEF1
ARRDC4
RNF13
MYEOV
ITGA6
GSN
RPS7
PLA2G7
ALG10
AP3S2
GBA
BAIAP2
AGRN
ITGB3BP
EFCAB7
FCMR
HLTF
SEC22B
COPS7B
PAFAH2
SYTL2
TNRC18
LOC100129484
PAX4
CCNC
FRA10AC1
USP30
PDCD6
HBP1
WDR36
NSA2
GFM2
PCDH9
SMC4
IFT80
LTBP1
IL17RB
CHDH
CCDC9B
ALKBH3
GTF3C3
WDPCP
MDH1
ZNF780A
ARID5A
RBBP5
ZNF24
GALK2
COPS2
TINAGL1
RTKN
SUGCT
MPLKIP
PELI1
PAQR4
SUPT7L
SLC4A1AP
LGALS16
KANSL1
KCNH8
STX16
ZNF12
ZDHHC6
VTI1A
KMT2A
INPP5A
NPEPL1
PUS10
PEX13
NDUFB3
FAM126B
COQ3
KIR3DL2
NDUFS3
KBTBD4
ZNF546
MRPL44
SF3A3
EFCAB2
ALG10B
KRR1
TRIM2
GABPB1
PTMA
EIF2D
PDE6A
DSTYK
ZBTB32
ETV6
RAG2
IFTAP
NXT2
SSBP1
WDR11
TMEM242
BRD2
NUF2
KDM3A
EIF3F
G3BP2
ZNF391
SLC35E2B
SLC35E2A
POR
PPDPF
SMARCD2
CDYL
SNAP29
PI4KA
PFDN4
IQCH
AAGAB
POLG
PDXDC1
PRKCI
PLEKHB1
MYH14
PARK7
TAF15
RNASEH2A
PRDX2
CDC25C
PPIB
DOLPP1
FAM53C
LRRC75B
GGT1
OGA
EIF3B
ZNF775
CNOT6
KLK6
PGBD4
EMC7
GIT2
ANKRD13A
WDR97
MAF1
PCDH1
CENPP
PTDSS1
MTERF3
GNB2
LSR
KHSRP
ATG101
LRATD2
RAB4B
MIA
EED
FRAT2
FAM227B
DTWD1
YY1AP1
CENPN
SLC35A5
ATG3
PHRF1
RHBDD3
EWSR1
USP15
ATG16L2
UIMC1
PLEKHG4
PIK3R3
COX19
SPATC1L
FRAT1
FOS
MYO9B
HAUS8
AKIRIN1
PRR19
PAFAH1B3
CDCA7L
DAP3
FAM102A
HMGCS1
LMF1
NDST2
MRPS24
PMVK
DNAAF3
SLBP
PRKDC
MCM4
UNKL
STIP1
MYL12B
UROS
PDE8A
BCCIP
PTOV1
DNMT1
ZNF219
TMEM253
CFDP1
CIC
ETNK1
ATP6V0C
COMMD6
NOTCH1
SELENOW
ZNF217
TIGD5
EEF1D
KMT5B
ETV2
COX6B1
KAT7
WWOX
UBE2C
RASSF7
LMNTD2
MBLAC1
IQCE
BRAT1
DGAT2
RMND5B
PITPNM1
TMEM160
PPP6R1
BZW2
ANKMY2
ZNHIT1
PLOD3
PAXIP1
UCHL3
FLCN
LAMB3
ABTB2
RNF103-CHMP3
RMND5A
PPP5D1
CALM3
PRDM10
SETD5
TMEM63A
BCL6
WASL
TSKU
MYL12A
XRRA1
SPCS2
OXR1
HMGB1
FUS
STK35
ACSS1
RPL35
ARPC5L
HNRNPL
USPL1
KANSL3
FER1L5
TEPSIN
NDUFAF8
DGLUCY
TRAPPC6B
PNN
E2F6
CDIPT
ZNF609
CCDC59
SLC25A42
ANKRD39
NOL8
NOCT
ZNF8
WWP2
PROSER3
HSPB6
FAM83D
CNOT3
ZCCHC4
LIN54
CDON
SHKBP1
MTBP
MRPL13
C21orf91
CCNL2
TSPAN4
POLR2L
MRPS31
USP3
DBP
MAT2A
RRBP1
ZFAND3
C6orf226
FANCI
BRICD5
H3C6
FAM72C
SLA2
UBE2B
CDKL3
PIP4K2B
DPP9
ARNTL
DPY19L4
GTF2IRD2B
TTC9B
CCNP
DRAP1
C11orf68
ULK4
ARAF
FGFR4
PSMD14
PSIP1
ARHGAP19
ZFAND4
RBM7
C11orf71
KRT15
PGP
LUC7L2
MAGIX
CABP7
OGDH
MLST8
SYVN1
LAD1
HHIPL1
CCDC85C
RRM2
CNFN
TP53BP2
CNOT1
SRI
TMEM260
SRGAP2B
FAM72D
FDFT1
TMEM45A
TTLL7
FRMD5
ZNF335
CNP
TSKS
RPN2
MROH8
AP2A1
UFSP2
TOP2A
C4orf47
NDUFB1
HDAC2
CPSF2
TANGO2
ARVCF
MTCH1
HBB
MIA2
CYP2R1
LEPROT
LEPR
DISP3
SERTAD1
TUBB4B
STK32C
LRRC27
THOC1
SLX1B
SLX1A
BOLA2B
BOLA2
NUCB2
PRCP
DDIAS
SOD2
NCDN
KIAA0319L
STX18
SLC5A1
KANK1
ANKRD12
RUBCNL
MRPS11
MRPL46
PRKACA
SMC3
ANP32B
TARDBP
RPL22
PRDX1
UBA1
ZMYM5
RNASEK
CBX5
C17orf49
TNS2
PRR3
GNL1
ATAD2
SS18
TLE3
STXBP3
DNAJC14
ATP8A1
RABGEF1
ANP32A
TMPRSS3
MRPL21
IGHMBP2
LANCL2
TES
TRAF2
RAB33B
CLDN12
OSBPL2
C6orf62
SP2
UBE2A
ATP5MC1
ACAP2
TBC1D17
SHROOM1
PSPN
ALKBH7
AKT1S1
PRRC2B
GLIPR1L1
CAPS2
ZNF3
WASHC5
NSMCE2
ZNF180
UQCRC2
PDK2
SORT1
MSANTD4
PPP1R13L
POLR1G
PLPP2
KMT5C
C2orf42
OTUD7B
FMN1
BAZ1B
UQCRQ
GDF9
MBNL1
SELENOH
INTS12
GSTCD
MGRN1
SRGAP2C
FAM72B
PIF1
BOLA2-SMG1P6
NUP107
SKA2
PRR11
ADAP1
HECTD2
PLAG1
CHCHD7
ZMYM2
CALU
SRGAP2
FAM72A
ZNF572
PSMD6
LRCH4
FBXO24
ATF7-NPFF
ATF7
HDAC1
KCTD2
ATP5PD
TRIP4
FMC1-LUC7L2
FMC1
FBXO5
ETV4
HNRNPA1
POLR2J3
BCAS3
TMBIM4
NCOA3
SSNA1
ANAPC2
SIRT2
NFKBIB
PTPRA
PTP4A2
NBEAL2
TBRG4
RASEF
EFNA4
SPRYD3
EIF2AK3
PACSIN2
PANK2
CNNM2
WRAP53
TP53
CENPE
ARHGEF38
OTOGL
VTCN1
SMIM35
EIF1AD
COQ8A
BANF1
NFE2
KIF1B
MRPS23
DUSP6
GOT1
TMEM168
NLK
RPS3
H2AZ2
RPL19
CACNB1
CCDC12
HOMEZ
FAM228B
GTF2H2
SEPTIN9
ISOC2
ZNF687
TMEM94
TCP11L2
SLC33A1
LSG1
MRPL40
HIRA
ANKHD1-EIF4EBP3
ANKHD1
FARSA
CALR
PPM1D
SLC24A1
INTS14
TRIM37
SLC11A2
INAVA
ATG9B
ABCB8
MADD
CLTC
HR
UTP18
MBTD1
ATP5F1E
NFYC
SLC35B2
GPR137
BAD
UXS1
LMCD1
HYAL2
NARF
MED23
ADPGK
PELATON
RNF6
AKR1E2
DCLRE1B
AP4B1
SLC44A1
NR6A1
PDIA4
MYT1
EMSY
IVD
GTF2H2C_2
USP17L20
RBM42
PKNOX1
USP17L22
PEX3
ADAT2
VBP1
PCLAF
C7orf57
GATAD2A
MAST4
CANX
HACD3
TUBD1
RPS6KB1
H3C15
H3C14
H2AC19
H2AC18
TMCC3
UFD1
CDC45
TMEM258
FEN1
MRPL45
HNRNPUL1
GIPC1
WDR62
THAP8
ZNF574
MACC1
UNG
ALKBH2
MTSS2
CSNK2A1
ZKSCAN1
NUDT2
FAM222B
PRKAB2
CHD1L
ARHGAP39
GET3
COMMD2
TOMM40
EFNB2
CD164
SHF
HDGFL2
FZD1
GGNBP2
BACE1
UBC
SREK1IP1
CWC27
TFPT
PRPF31
COA1
PRR7
DHX36
ABHD2
TMTC4
LYRM1
DCUN1D3
B4GALT7
FBXO32
RAB5B
TTBK2
DOHH
TESK2
GTF2IRD2
RPS29
RAB28
DIAPH1
SNX17
EIF2B4
CDKN3
PRKAG2
PTCD3
POLR1A
MAMSTR
H2BC12
H2AC12
LEMD2
ZNF300
MIA3
FBXO33
SPTLC2
VMP1
PTRH2
TMEM60
PXMP2
POLE
PHTF2
UGP2
CNPY3
ZSWIM4
GTF2H2C
DAZAP2
RPL26L1
RUVBL2
GYS1
RAB11B
G3BP1
PAK4
PSPH
CCT6A
MEIS1
KCTD7
IFT46
PRORP
PPP2R3C
OSBP
NREP
FAM227A
CBY1
DICER1
LRRC37A3
WDR74
CSPP1
COPS5
RWDD1
VIRMA
ATP5F1B
YJU2
CEP63
ANAPC13
ZNF862
PARD6B
SRSF7
KCNAB2
ARID2
TBC1D30
RBM28
PAIP2B
NOL11
MTMR14
RFX1
NDUFS7
STEAP2
SCAND1
CDK12
HLF
FAM110A
ECHDC2
HNRNPC
ACTN1
ZBTB3
RDH12
DENR
FANCF
ZBTB45
ARHGAP27
COL9A2
OPA1
H4C15
H4C14
B3GALT2
TTYH3
OPA3
HEXIM2
RBM48
PEX1
ASPM
SLC46A3
TRIM29
FAM217B
IFT52
UTP23
ARHGEF5
AK2
RBM27
EFR3A
CDK16
TADA3
ARPC4-TTLL3
ARPC4
TSR3
GNPTG
CCT5
ATPSCKMT
S100A13
PPP6R3
ZSCAN22
SF3B6
EIF3E
TATDN1
NDUFB9
CHCHD6
ARL6IP1
PCNX3
MAP3K11
KLF10
NSFL1C
CYTH2
RPS19
BRIP1
ECPAS
GATAD2B
SH3TC2
SASH1
MOCS3
MAP4K5
DPM1
BICD2
ATL1
MYLPF
CLIP2
ACAT2
TYK2
PTCD2
PRICKLE2
MRPS27
DDR1
DYNLL1
XPA
TRIB1
TBC1D31
SS18L1
PSMA7
SLX4IP
RAB7A
MKKS
TOM1L2
RPL27
METTL9
DRC3
PPFIA3
LIN7B
C19orf73
CUL2
RHPN1
DCUN1D4
RBBP8NL
LDHA
FYN
TMEM41A
PALB2
DCTN5
CFAP20
CDK2AP1
ARL14EP
NCMAP
DDX41
EPYC
PPP2R2B
YIF1A
TOM1
TMEM209
TMEM151A
SSMEM1
HOXA3
CFAP221
NCSTN
MTMR12
COPA
SYT7
PRR25
PPP4R3B
MAN2C1
AURKAIP1
ATP5IF1
ADI1
RUNX1
SETDB2
KPNB1
ING1
CAB39L
INO80C
SMARCAL1
NME1-NME2
NME1
STAT1
SLC25A38
PKM
KRT8
WDR61
MAN1A2
THEM4
RCN2
CYP24A1
FASN
TMEM222
RUVBL1
PRMT1
KATNB1
CCDC130
ADNP
DGCR8
HGS
ARL16
LRPPRC
CYP2W1
SLC25A10
HIBADH
POLR3E
POLR3B
PNKP
MAPK1IP1L
USP32
TPBG
CLDN3
NRARP
EHF
ASH1L
STAT3
C18orf21
RPL37
NPAS4
NBN
FAM133B
ADGRL1
SOX6
RLN2
RNF139
KMT2E
DYNC2I1
TMEM218
SMG8
PHPT1
MAMDC4
BMP7
TTC26
AFF1
CSKMT
C11orf98
HEXA
CHD6
SLC25A25
RB1
NAIF1
NPL
CYB5R2
RPUSD3
PDE4DIP
USP8
SC5D
PRR12
SIPA1L2
NIPAL4
COBLL1
AP4E1
ZDHHC5
KANSL2