ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478468 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◣ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

DUX4
WDR74
STX5
EAPP
SIRT4
FRG2C
PARP16
TAF12
MESP2
ART1
MTRNR2L1
H2BC5
H1-4
FRG2
TFF1
APPBP2
LOC102724770
DGCR6
BCAS4
RGS22
GTPBP6
H3C3
H1-2
PSMD6
PFDN4
POLG2
DDX5
TXNRD1
XBP1
H4C9
H2BC11
H2AC11
PTPN6
C12orf57
WDR93
PEX11A
FKBP4
TRIM37
COL23A1
STX16
PHRF1
NRAS
H4C8
SCRIB
H2BC4
H2AC6
NPAS4
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
BCAS3
GREB1
SERPINF1
TPD52L1
NPEPPS
NBPF4
NCOA3
PPM1D
CELSR2
H2BC21
H2AC21
H2AC20
TUBD1
RPS6KB1
SGK3
PARD6B
CRYAA2
CRYAA
CHD2
PRLH
TPTEP2-CSNK1E
B4GALNT3
H4C5
H3C4
H2BC7
H2AC7
ARFGEF2
CLTC
TMEM107
CALM1
VPS26C
RBL2
USP32
POLR2J3
TOR2A
TMIGD3
ADORA3
NBPF6
RTEL1
SLC22A5
TEX14
RAD51C
PRRT2
MAZ
H3C13
H2BC18
EIF2D
PRUNE1
MINDY1
SULT1A4
SULT1A3
CLDN6
TNFRSF12A
THOC6
HCFC1R1
NMNAT1
LZIC
IGFBP4
BRIP1
DHX40
KIF2C
RNFT1
KRT8
SIX2
MLPH
HMBS
H2AX
DPAGT1
ENTPD5
BBOF1
SMARCD2
TPM1
TRMT12
GSTP1
RGS19
OPRL1
LKAAEAR1
FBP1
RARA
AGR3
SLC45A4
MAN2C1
ZMYND8
AKAP1
SPATC1L
SLC25A24
GET4
H4C6
H4C7
H3C7
H2BC9
HTR5A
AMZ2
EIF1
ABCA5
CDH18
OSBPL2
TSEN54
LLGL2
CASKIN2
GINS1
ABHD12
TTLL3
FAM53C
CDC25C
NDUFAF3
IMPDH2
DALRD3
RBBP5
ANKRD60
C1QTNF6
SYCE2
HEXIM1
EHMT1
CSDE1
PLA2G10
NPIPA3
NPIPA2
BCAS1
CAP2
REN
RAE1
MTRNR2L3
WBP1L
SPINK4
ISG20
PDCD6IP
INTS2
FKBP1A
ARHGAP35
RMND5B
YBEY
MCM3AP
ZFP36
PLEKHG2
DYRK1B
DPP8
HNRNPA0
BMP7
COIL
ABCA3
PIK3R3
MICU2
PTPN1
STARD10
STMN3
UNK
H3-3B
SCAMP3
FAM189B
GALK1
TRIM33
CTDSP1
ARL6IP1
NOL11
HNRNPH1
KRT19
SLC44A1
ID2
STAP2
MPND
PRDX2
JUNB
EPS15L1
C6orf226
EXOSC6
SPTSSB
HIPK1
MRPS23
LMAN1L
CPLX3
VEZF1
NSG2
LPCAT1
H4C13
H3C11
H2AC16
H1-5
BCAS2
FAM227B
DTWD1
THAP5
DNAJB9
ARID4A
RXRA
SPAAR
HRCT1
PRR14
FBRS
RNF114
POLD1
NR1H2
TBX2
ARNT
RPL12
LRSAM1
SRSF7
CEP112
TEX22
PPFIA4
PRSS16
MPV17
BAHCC1
FIS1
CLDN15
ZNF217
HEXA
GPRC5A
SLC16A6
ARSG
LAMC1
CD55
ATXN7
SBNO2
NXPH3
AKAP8
ATP5F1E
CPLX2
PDXDC1
USP8
NPIPB9
SETD5
POLDIP3
H3C6
H1-3
NELFCD
CYB561
ZWILCH
SNAPC5
RPL4
UBQLN1
COQ7
ATP6AP2
FUT8
EPN1
PBX3
EBAG9
DCLRE1B
AP4B1
CYB561D1
ATXN7L2
WDR6
ELAVL3
TMEM223
TMEM179B
SRSF2
PRMT6
MFSD11
KMT5B
FAM133B
CRBN
PRKRIP1
GOLGA6D
H4-16
H2AJ
FUT11
CHCHD1
ATN1
NAA60
TIPARP
GTF2A1
SLC25A19
TOB1
IRF9
LDHD
FXYD3
FNIP2
ARAP1
ARIH1
RERG
PRKAR1A
SRSF5
DENND2C
SLC24A1
PRMT2
INTS14
MYL6B
MYL6
ADNP
PHAX
ALDH7A1
ZC3H10
RPL41
ESYT1
TSSK4
MDP1
CHMP4A
PA2G4
LINGO1
ANKRD13D
RPLP0
GCN1
POR
PIP5KL1
DPM2
MTHFS
GID8
DPY19L3
DIDO1
UTP18
MBTD1
NXF1
NACA2
METTL2A
P4HA1
TUFT1
RIPPLY2
CYB5R4
HECTD1
FOS
EGR1
YJU2
USP42
GNG3
BSCL2
PIK3C2B
GTF2IRD2B
MAP3K3
DMRT2
BANP
PTMA
SENP8
MYO9A
SSH3
MEMO1
MYNN
ACTRT3
ZC3H14
TRIM25
PTPN21
CYTH2
ID1
TMEM167B
ESR1
ZC3H6
VCPKMT
TRIM44
C1orf56
RIPOR3
TDRKH
PLXNA1
GOLGA6L10
HSPB8
NBN
H2BC12
H2AC12
NUCKS1
PRSS22
UQCC3
LBHD1
CSKMT
C11orf98
FAM220A
PPIC
SLC44A2
KLHL12
CDH26
STRADA
ZER1
HIGD2B
BBS4
CYP27C1
STX10
IER2
CA4
TACO1
ZNF219
TMEM253
EDC4
DDX42
CCDC47
ERAP1
C3orf14
TDRD7
H4C4
H2BC6
CDK11A
BCAR1
KMT2E
TOMM40
SVIL
KRTCAP3
HBQ1
HBA2
HBA1
ESYT2
DYNC2I1
C16orf95
L3HYPDH
JKAMP
RPS5
LRRC37A3
GATD3B
GATD3A
POLD4
LOC730183
SRCAP
SYCP2
FAM217B
ADPGK
TP53BP2
PPP1R3D
GNG14
DHPS
LRCH3
TRIP4
PCLAF
PSMC5
FTSJ3
PSMB4
OTUD7B
ZCWPW1
PPP1R35
MEPCE
CCDC59
THOC3
NPIPB6
THOC7
RAD23A
CALR
PHC3
SH2B1
MVK
KRT15
PPP6R3
XKR7
NDUFS3
KBTBD4
FAM180B
SLC35C2
NOTCH2NLA
VMP1
PTRH2
NME1-NME2
NME1
NR4A3
RBM48
PEX1
SEMA4B
FBXW9
LYRM1
DCUN1D3
ROPN1B
UBC
MRPL21
IGHMBP2
RCCD1
PCTP
KLHL20
MRPS28
RINT1
PUS7
MAPK1IP1L
C12orf66
PPM1E
NGRN
KCTD3
PFKFB3
WDR37
TRNT1
TMEM186
PMM2
IDI1
CNBP
MRPL2
KLC4
CUL7
ST20-MTHFS
PWP2
LOC102724159
PDE4DIP
TCAF2
ERCC6L2
RPP25
RGS14
MPPE1
LMAN2
DGKZ
CYP1B1
SMG8
TSEN34
PRMT5
MED13
ZNF43
ALDOA
WWOX
UAP1L1
MAN1B1
CACYBP
C2orf42
DSTYK
DPY19L4
LEKR1
RIPK1
NPDC1
ENTPD2
GSK3B
TPD52L2
ABHD16B
STAT1
SSR3
SEC22B
MAPK6
MDM4
IER5
IQSEC3
PAIP2
AOPEP
BNIP1
PSMG1
ZFP37
RNF7
ELF3
CLPB
H4C12
PTP4A1
H4C11
H2BC14
H2AC14
DDX59
TMEM191B
PEX2
CLDN4
YWHAZ
WDR4
CYP51A1
RGS9
MEF2A
MRPS18C
HELQ
MSL2
NAPEPLD
EIF4A3
TMEM168
SEC13
PPDPF
ZNF768
ZNF747
SHOX2
SCRN2
SYT1
OSBPL7
MRPL10
LRRC46
PALM2AKAP2
STK32C
LRRC27
PSG5
PSG9
ARHGAP5
PLA2G4D
SNX32
PSG1
CDADC1
SMARCC2
MKLN1
NDST1
PSG11
SLC5A10
MTRNR2L8
ALOX5AP
BACH2
SLC6A4
TNFRSF19
GLG1
EXOSC2
RNF43
NEDD9
WWP1
NIPSNAP1
PSG7
GTF2A2
DOT1L
AP3D1
HSD17B4
LYN
ADAM17
PSG3
PSG8
MTRNR2L2
MSH3
DHFR
HEG1
CCDC141
YTHDF1
ZDHHC1
TMEM52B
OLR1
RAB17
CDH1
SPNS2
ITGAM
SERBP1
PPP1R14D
ETV3
ANKRD23
FABP7
PSG4
LRP2
BCL2L13
ATP6V1E1
SLBP
CRPPA
MTDH
PPP1R2
MYOCD
IFNAR1
KRTAP2-2
KRTAP2-1
KRTAP1-1
GTPBP4
YWHAE
DPEP2
ATP2B1
SLC25A44
HCAR3
HCAR2
MYEOV
FAM110A
C9
PIWIL3
KIAA1191
TAGLN2
RABGGTB
SNRPE
TMTC2
OR10V1
KRTAP3-2
KRTAP3-1
MIS12
DERL2
CENPX
SH3BP4
PATJ
TMCC1
C18orf21
SLC10A6
NAGLU
SOX9
HROB
HDAC5
GSTO1
ENTPD1
ANKRD40CL
SLCO2A1
PSPN
ALKBH7
RYK
ENPEP
TPD52
COLEC12
SLC7A4
ADGRG3
MS4A2
TRUB1
KRT1
FRY
CAMSAP3
PKIB
BACE1
DNAJC15
ADH4
SEC23A
GEMIN2
NR4A1
ADAM10
PHLDB2
RASA2
SEMA6A
ALG10B
ANKRD1
GALNT11
AMN1
PISD
LTBP2
IRAG1
TAS2R41
ZBED1
DHRSX
CCDC81
COMMD8
TMEM270
MAPK10
PTK2B
SLC7A6
TMEM141
ALPP
SLN
HEXB
MEST
CHI3L2
SDC1
PRR5
UPK1A
ABLIM1
ZNF740
CSAD
CDK19
AMD1
ZNF444
CDC42SE2
IRF8
SFXN5
LATS2
EFNA1
RARS1
TMED10
LNX1
USP6NL
METTL27
ARHGEF18
LOC105378979
ZNF341
PXMP4
RNF126
FSTL3
PLEKHM3
IKZF3
UBE4B
KIF5C
ASAH1
SLC7A2
SLC19A3
QPCT
LIMS4
LIMS3
BAMBI
ALS2
GCM1
OSBP
CFAP45
EHF
FDFT1
LIMS1
RSAD2
UBE2J1
IL10RB
DPRX
DLG2
IL1R1
FAM89A
OLFML1
FOCAD
PCOLCE2
PRKCZ
UHRF1BP1L
SYBU
SH3YL1
ACP1
TSPAN10
NPLOC4
ACSS1
VPS37C
TXNDC2
IGSF22
EID2B
EID2
UBXN11
SLMAP
SLC7A7
MRPL52
TCF15
SLC2A8
GLIS3
TRMT9B
NTAN1
FGD3
DNMT1
METTL21A
TGFBR1
ID3
SLC18A1
SH2D4A
PTBP3
SLC30A1
FBXW8
PGS1
CXADR
PET117
KAT14
ZNF474
TMEM88B
ANKRD65
SEC11A
ANO6
TRPM6
TLK1
IL34
TMEM245
PTTG1IP
ZNF749
MIDEAS
RLBP1
FAM151B
ZNF362
TNS3
ZNF331
SMIM15
TAF6
CNPY4
SPG7
SLC15A2
CCR5
TTC23L
CCSAP
CTPS1
ZNF592
NCBP3
EIF2AK4
AMOTL1
ELF5
VWA3B
FGD4
ZNF343
IFNL4
IFNL2
PSG2
TMEM212
CHST6
FZD6
PKP2
ZNF407
LSM14A
PACSIN2
NIBAN2
LDLR
DHCR24
ZNF503
NAV2
HMOX1
ACER3
ACVR1
NKX2-3
KRT71
EYA3
TACC1
MCCC2
MGARP
KIT
ITLN2
NME4
DECR2
SIK3
USHBP1
TMPPE
GLB1
BABAM1
CLCN4
KLHL5
JADE1
POU5F1
TIPIN
SAA1
CXCL2
MAB21L4
CROCC2
PLAAT5
ZNF641
UTRN
ZNF367
LGR5
CHMP5
C6orf163
BAG1
ZNF398
GSTA4
TIAM1
APOL6
FEM1B
INSL4
ERP27
CALML5
SPOPL
HSPA2
SIX1
RBM15
SLC20A2
STARD8
SLC7A9
P2RX6
TET1
MARVELD3
FNBP1L
RGPD2
RGPD1
SETD4
DOCK5
DEFB130B
DEFB130A
CBR1
LHX8
HACD2
RALBP1
PCDH15
SNX31
FBL
CLDN10
KCTD7
ZNF22
PLAC8
DENND1C
CRB3
AFF4
MB21D2
LGALS4
FAM102B
ATP13A2
NDUFB5
MRPL47
PPFIBP2
EHD4
CCNL1
GPR78
CHN2
SLC4A11
NSD3
LETM2
KRAS
GABRR3
TULP1
NOB1
SAMD7
DNAJC21
VIT
RGL1
CORO1C
ARPC5
ADGRF4
RBFOX2
ARHGEF10L
C6orf132
TRAM2
ROPN1L
BMP10
GIPC1
PIK3C2A
AZIN1
ODAM
ADGRF5
BAZ1B
UBL3
MESP1
PHTF2
MED15
IL1F10
RHOH
CENPS-CORT