ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478469 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◣ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

DUX4
WDR74
STX5
SIRT4
EAPP
FRG2C
NBEA
TFF1
PLEKHM3
FOXN4
ALOX5AP
MTRNR2L1
BCAS1
IER3
FLOT1
MESP2
TXNRD1
LYN
SIX2
SLC7A2
SLC22A5
RNF114
SIGLEC10
MFSD4A
POLR2J3
CD36
PRSS16
GREB1
MESP1
POLR2J2
TSPAN3
BZW2
NPAS4
ABCC5
SLBP
TAF12
POLD4
NPEPPS
SH3RF3
TMEM107
RBL2
POLG2
DDX5
BMP7
TRA2B
OSBPL2
GPRC5A
CYP27C1
BCAS4
CDH18
FAM102B
H2BC5
H1-4
NUP42
NEDD9
HNRNPA0
HES1
ART1
SRI
ADGRF4
NCOA3
PTPN6
C12orf57
PARP16
FOS
BAHCC1
ATP6V0D2
TMEM205
RAB3D
CCDC159
NR4A1
ATG101
EDARADD
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
FURIN
CELSR2
SLC13A1
PHRF1
PFDN4
HSPA4
FAM151B
GINS1
ABHD12
WDR93
PEX11A
RGS22
PSG5
SGK3
MTURN
C1QTNF6
SCRIB
SPATA13
RUBCNL
MYC
ATP6AP2
SLC4A7
H2BC4
H2AC6
ZDHHC19
SLC51A
PLAGL1
SETD5
SMIM6
SPINK1
RXRA
ID1
CCDC200
NBPF1
ID2
EGR1
APOLD1
ZNF337
NTSR1
ZC3H10
RPL41
ESYT1
ETV3
FRG2
GSTA4
UMODL1
KIF2C
FAXDC2
RMND5B
MRTFB
PSMD6
USP3
WDR61
PRLH
NRAS
CDH1
SLC45A4
AVPR1B
TRIM37
STX16
ATP13A3
TOR2A
COL23A1
MITD1
PARP2
CCNB1IP1
BCAS3
H4C6
H3C6
H1-3
VPS37C
FKBP1A
DPRX
TMEM94
HDGFL3
TSKU
FOXJ3
ARID4A
H4C9
H2BC11
H2AC11
USP6NL
GMNN
SSH3
BANP
CA5A
GRAMD1A
BHLHE40
CD55
CHD2
YBEY
MCM3AP
REN
PSG9
OPN4
PARD6B
ATXN7
THOC7
CLDN6
TNFRSF12A
THOC6
HCFC1R1
ZNF331
PTMA
ARNTL
SMYD3
ADAMTS16
SLC25A25
NAIF1
INSM2
HEXB
MACC1
CAPN13
SMARCD2
NOTCH2NLC
H3C3
H1-2
PRSS41
GTSF1L
NAV2
HEXIM1
STARD10
IKZF3
GTPBP4
TACC1
QSOX1
ARHGEF6
EPS15L1
ZFP36
PLEKHG2
CIPC
RIN2
LOC102724770
DGCR6
PPP6R3
APPBP2
RNFT1
MIDEAS
MB21D2
CAP2
RP1
CLDN4
YWHAZ
KMT2E
MINDY4
HSPB8
ARPIN-AP3S2
ARPIN
RBBP8NL
MAFK
BMPR1B
H4C13
H3C11
H2AC16
H1-5
CLDN10
RUVBL1
SFXN2
ARL3
HOMER2
MYO5C
ZMYND8
AKR1E2
PRKAR2B
CLTC
GSTP1
JPT1
RASEF
KLK12
KLK11
KLK10
KCNJ15
IGFBP4
FAM214A
H2BC21
H2AC21
H2AC20
OARD1
NFYA
S100A9
RGS19
OPRL1
LKAAEAR1
S100A12
ZBED1
DHRSX
PSD3
TPTEP2-CSNK1E
RORC
PMEPA1
C2CD4D
UCKL1
HTR5A
LAPTM4B
NACC2
IL24
GRHL2
SPTSSB
TUBD1
RPS6KB1
TMIGD3
ADORA3
NFX1
TRIB1
ODF3L1
CSPG4
TRAPPC9
P4HB
BTN3A1
IL1F10
PPM1D
USP32
MACROH2A1
KRT8
TUFT1
LSMEM1
ZNF76
TRIQK
PGLYRP2
KIAA1217
H4C8
CCDC59
RTEL1
RFESD
PABPC1
GTPBP6
STX10
IER2
SFRP2
KL
MPP7
IL1R1
PPP1R11
POLR1H
BIRC5
STAP2
MPND
MALL
CILP
FBXL18
KIAA0319
BRIP1
KLK13
VPS26C
POLD1
NR1H2
IQANK1
FAM83H
NAT1
FANK1
NAALADL2
TNS3
SPINK4
PRKAG2
SH3D21
PPP1R15B
POLDIP3
CYP3A43
AKT2
ENSA
ID3
KDM2A
TPD52L2
ABHD16B
EPB41L4B
SRSF5
KRTAP3-2
KRTAP3-1
XBP1
ERP27
CBWD5
CBWD3
CERK
ESR1
ZCCHC14
MRPL2
KLC4
CUL7
IGSF5
ZWILCH
SNAPC5
RPL4
USP42
RAD23A
CALR
IER5
PDE4D
C1QTNF9
USP36
MLLT3
SULT1A4
SULT1A3
RAB15
TSG101
PPP4R3A
FREM2
TRMT12
SERPINA3
RPEL1
LGI1
PTPRE
DUSP14
FAM160B1
VEGFC
GCM2
TNFAIP1
IFT20
VKORC1L1
TMPRSS4
TMEM97
SMIM35
MICOS10-NBL1
MICOS10
DNAJC5B
PALLD
EIF2D
RAB8A
PRRT2
MAZ
RARA
OSER1
PFKFB3
SPATA2
PHLDA3
ZBTB4
SLC35G6
POLR2A
CDS1
PDE4DIP
ALDH3B2
PRDX2
JUNB
XKR7
SKA2
PRR11
NTSR2
MRPS18B
RAPH1
RARRES1
NAA60
TIPARP
TFAP2A
ZHX2
PLEKHH2
G3BP1
ROPN1B
SLC25A24
ARNT
DNAJC16
CASP9
SULF2
LPCAT1
CREM
ARAP1
TTC6
FOXA1
PIK3R3
IFNGR1
DHX40
SULF1
SERINC5
PGF
KLF10
STMN3
ARHGEF18
RHOV
TBL1X
ERVW-1
SPRR2F
SCRT1
GNAT3
DGAT1
C10orf67
ZNF217
POLR3E
ANOS1
ZBTB7C
APOL4
SUCLG2
LYRM1
DCUN1D3
EIF4A1
NMNAT1
LZIC
MRPS28
SLC37A4
MPDU1
LOC100996842
CD68
ANP32E
MIS12
DERL2
TMCC1
H4C12
SEPTIN9
H2BC15
H2AC15
KRT39
IL22RA2
S100A10
C3orf14
CHST6
ZC3H6
TFRC
PTPRR
TAGLN2
PIM3
NXF1
GPD1L
NXNL2
HSFX4
EOLA2
WSB1
GUK1
GTF2A1
SLIRP
C7orf50
ALKBH1
ST3GAL4
FUT8
SRSF7
RNF223
PNMA1
LURAP1L
ATG14
PHLDA1
TRPS1
MYEOV
ACOT2
CS
WRAP73
TMEM217
TBC1D22B
PRKX
KRT83
TBX2
CA4
PPIA
KRT19
GPBP1
HDAC11
ISG20
SSTR5
ESYT3
SPAAR
HRCT1
TOB1
ZNF23
EPPK1
EDDM3A
RNF170
HOOK3
ITPRID1
DSTN
BFSP1
EFNB2
H3C13
H2BC18
HOPX
DCLRE1B
AP4B1
PRKAR1B
NRDE2
IQSEC1
CSTF1
CSRNP1
AURKA
SMIM28
NQO1
MYOG
LCMT1
PAPOLA
PIK3C2G
NBPF6
UNK
H3-3B
IQSEC3
CALM2
GOLGA6D
POR
CIB3
EID1
TPD52
LNX1
PGS1
CALML5
RBM48
PEX1
RAB11B
CSNK1A1
CALCR
PALM2AKAP2
SLC25A51
SMIM5
CREBL2
ANKRD35
CLYBL
H4C5
H3C4
H2BC7
H2AC7
RIPPLY2
CYB5R4
SMTN
PRR5L
PRICKLE2
INTS2
FKBP4
UQCC3
LBHD1
CSKMT
C11orf98
TM4SF19
SRF
FAM161B
CUL9
COQ6
CCDC138
CNOT11
SYCE2
CYB561
LGALS8
ARL6IP1
LYPD6B
RELT
ELAC1
PPP5D1
CALM3
UFL1
MLLT11
CDC42SE1
C1orf116
DOT1L
AP3D1
ELF3
DCAF4
TSEN34
SNX31
H4C7
H3C7
H2BC9
DCAKD
SEMA5B
AADAC
SDC4
LRRFIP2
MTFR1
ARMC1
ZNF398
PRUNE1
MINDY1
MNT
CNOT8
B3GNT6
RHOBTB2
VASN
HSBP1
ATXN1
LSM14A
TLE3
FAM53C
CDC25C
TDRKH
FARP2
DNPEP
ZNF367
CBWD6
IRF9
STAT6
IVNS1ABP
ECH1
ASIC2
OSBPL8
C2CD2
DDX47
TM9SF3
LSM10
C11orf80
FEM1B
FGF1
RNF213
CRYAA2
CRYAA
MTHFD1L
MAST4
EREG
BDKRB1
METTL21A
AKAP1
U2SURP
BCAS2
TMBIM6
PARP10
GRINA
TNFRSF19
STK3
SPO11
ENTPD3
CIRBP
ATP4B
PISD
CSRNP2
FAM53B
MS4A7
TPD52L1
RABGEF1
SVIL
SPOCK2
LYPD3
SLC38A1
ABRA
MTUS1
ZBTB2
FAM227B
DTWD1
ARIH1
ZNF33A
RTF2
PSMB10
POLR2J
LCAT
CTRL
CD22
SELENOI
ADGRF3
KLF6
PRSS22
TNFSF15
STX1A
GNE
FHL1
CHST15
FBXW8
SALL4
TMPRSS13
TSSK4
MDP1
CHMP4A
DDX59
HES4
COX16
CTR9
SERPIND1
MGLL
LOC730183
SRCAP
FAM24A
LIMA1
MSH5
PSMC5
FTSJ3
TC2N
WNT10B
WNT1
LGMN
PRKRIP1
B4GALNT3
HSPA1B
HSPA1A
ZFHX2
THTPA
THEM4
BAMBI
SPIRE2
SLC35A3
ZNF609
HNRNPA2B1
DOLPP1
CBX3
DLG2
TEX2
RHOD
HSPB1
P2RX7
HSF1
BOP1
ZFAND6
TMEM126B
POTEJ
PCK2
NRL
LY6D
LRRC6
ACOX3
TEX14
RAD51C
HMBS
H2AX
DPAGT1
NBPF4
CDH26
DBR1
METTL27
SBNO2
HDC
ARFGEF2
ATP1A1
FBP1
GTF2H2
SYCP2
FAM217B
SLC34A3
RNF224
RNF208
KYNU
INTS1
GTF2H2C_2
CYSRT1
CDH10
CDC42EP3
BRI3
RERG
ZNF34
RPL8
KRT86
HEXIM2
ARID3B
TMTC2
MYO6
TNFAIP8
PTK2
TRIM7
MINDY4B
H2BC8
H2AC8
ANO6
RPLP0
GCN1
H2BC12
H2AC12
USP15
RBM3
OR6S1
TGFB3
IFT43
RDX
NBN
SH2B3
RNF11
NDUFAF3
IMPDH2
DALRD3
LAPTM4A
S100P
CATSPER3
ZNF184
KLHL35
HOXA5
HOXA4
HOXA3
ELK4
CHD4
ADCY5
IRF8
ART4
CSGALNACT1
WWOX
ATP5F1E
DENND2C
MARK1
CPEB4
SLX1B
SLX1A
BOLA2B
BOLA2
FAM240C
ZNF425
KRTAP5-6
FAF2
DUSP1
CCNT1
ARSD
YPEL3
GDPD3
RCC1
MTA3
TEDC1
CRIP1
KXD1
FKBP8
NOTCH3
KCNG3
CRIP2
EIF1
IDH2
PKIG
PIP5KL1
DPM2
AHCY
TSGA10
SECISBP2
PCGF5
GOLM1
CKS2
C2orf15
MYNN
ACTRT3
ALDH5A1
WDR81
TUBA1C
TLCD2
SLC25A43
HBP1
DGKZ
PFKP
C19orf33
TMEM126A
RPL13
COPS7A
BRMS1
B4GAT1
IDS
SHC1
VPS45
ARHGEF37
TTLL6
TFAP4
SAR1B
PYGO2
PBXIP1
LOC101928120
FAM131A
DICER1
MRPS23
ATG9B
ABCB8
EPO
ANKRD60
FUS
DMXL1
TNPO1
TFAP2C
SCFD1
POTEI
CLBA1
AHNAK2
EHMT1
MYL6B
MYL6
CEP63
ANAPC13
ARRDC1
UBC
TM4SF1
MYLIP
BARHL1
ATP2B1
TMEM167B
POLR2K
FBXO43
SMG8
PTP4A1
PLK2
CPPED1
FAM220A
NRARP
HEG1
KRT18
GLTP
CPLX2
KIF26A
ANKRD36
AARS2
TOMM40
SGF29
NADK
L2HGDH
GDF15
DMAC2L
CGRRF1
TMEM270
RAB11A
HIPK1
GNG14
DHPS
EIF2AK2
CTBP2
ARID1A
NIPSNAP1
CYRIB
CALHM4
TNRC18
PLD1
MAN2C1
ANKRD36C
PPP2R5E
OPA3
NACA2
TTYH2
RPL38
MAPKAPK3
CISH
CHD1
SDC1
AKAP8
GABARAP
ELP5
CTDNEP1
ZBTB26
SHOC2
RPS20
RABGAP1
PRRT1B
BBIP1
ATP2C2
CCNL1
H4C11
H2BC14
H2AC14
ZFP36L1
KPTN
EIF2AK3
FOXO6
HNRNPH1
RCAN3
TACO1
MRPL21
IGHMBP2
ANKH
CLIP4
CHCHD5