ChIP-Atlas: Target genes

Potential target genes for HDAC4

Query protein: HDAC4
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2140208 | MM.1S
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC4's Target genes

◢ HDAC4: Average

◣ SRX2140208: MM.1S

◢ SRX8213853: SK-LMS-1

◢ SRX11525509: SK-UT-1

◢ SRX11525512: SK-UT-1

◢ SRX13466113: SK-UT-1

◢ SRX13466116: SK-UT-1

◢ SRX6054277: SK-UT-1

◢ HDAC4: STRING

MTRNR2L8
MTRNR2L2
RGPD2
RGPD1
MTRNR2L9
MTRNR2L10
PPP5D1
CALM3
SSBP1
TOP2A
RPAIN
NUP88
BPNT1
EPS15
INO80C
SYT7
CAPS2
KLLN
CCL3
INTS10
HNRNPUL1
MYOM2
SF3A3
SPATC1L
TOMM40L
HDAC9
ARHGEF2
TRAPPC9
TJP3
PROSER3
HSPB6
MDM2
ENPP4
CLIC5
ACTL6A
LNPEP
ATP2C1
KLF6
TMEM256
KATNB1
FUT10
RAP2B
PRDM15
CCL5
ALKBH7
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
TRIP4
SMCO1
CXCR5
MRPS18C
HELQ
RAB11B
DPP9
GBA
MTRNR2L1
ILF2
XAB2
NCOA7
KANSL3
H4C4
USP3
SKA2
PRR11
DRAP1
C11orf68
FSD2
BBX
AURKAIP1
KMT2C
HOOK1
COMMD2
MED23
SLC33A1
CMSS1
NDUFS7
EML2
MRPS23
LRRC14B
GCLC
FMO4
AQR
MNT
USP30
POLG
C2orf42
HSD11B1
INSR
TEPSIN
NDUFAF8
FAAP24
CEP89
TPST1
IFIT1
SMARCD2
TP63
CCDC77
WBP1L
POLR3F
DZANK1
SELENOH
LUC7L2
FMC1-LUC7L2
FMC1
CDC20
ZNF451
WAPL
GALK2
COPS2
TYK2
PSMD4
KDSR
LSG1
TLR5
TIMM22
SMARCE1
RAD51AP1
NR1H2
MPND
C12orf4
NLK
RPL35A
IQCG
PRPF18
TUT1
SPTLC3
KIF16B
ARHGEF1
DHX8
ZNF609
EPRS1
H4C3
H4C15
H4C14
RAP2A
CRB1
C16orf72
KIF22
COPZ1
ARNTL
CIC
ZMYND8
RAD51AP2
TACO1
PPP6R1
LTA4H
MYCBP2
RBM28
MFAP3L
ATP5MC2
TSC1
TDRKH
RAB40B
GFI1B
DHX16
KLHL20
CLEC7A
ACBD4
RBBP5
PWWP2A
UNC93B1
STOML2
HAX1
KHSRP
GORAB
CYP2R1
NDUFS3
KBTBD4
RFX1
TLDC2
METTL26
SH3GL1
SCNM1
LYSMD1
PRRG2
NOSIP
PSAP
ECT2
YJU2
UBE2I
TOMM40
TFB2M
KCNN3
DDI2
CNST
RHOT2
ZSWIM1
ZNF668
ZNF646
CHD6
ZC3H10
COMMD1
CCT4
PPP1R37
GPR89A
GOLPH3L
FAM207A
ADRM1
INTS1
NSMCE3
ITGB1BP1
IFT27
CPSF3
ZBTB5
TMEM218
CDC23
ARL1
NUF2
GABPB2
TTC21A
GORASP1
AP3S2
SSR3
SOD1
SACM1L
MAPK14
H4C12
PRR14
UTP3
NCBP2AS2
NCBP2
EVI5L
RPL27
WDR36
SNAP47
OSBPL2
NBEAL2
NAA35
JMJD4
RNF43
PAFAH2
MRPS15
DMAP1
LTN1
ZMPSTE24
THADA
NUCKS1
ISOC2
FRYL
CCDC61
POLR2J3
FBXO8
CEP44
UBE2T
TAF3
NDUFAF1
GTF2H2C_2
GTF2H2C
DNAJC14
DCP1A
SF3B6
FAM228B
LOC101927572
CCNC
ALKBH6
PGP
OPA3
NOXA1
MORC3
HARBI1
GGCT
DAPK3
ATG13
FLAD1
LY9
EIF4A2
SIRT4
RPL26
PDE12
LRRC45
CENPX
AK2
BABAM1
AP2M1
TPD52L2
TNFRSF17
PRICKLE4
NPIPB2
KAT7
INTS4
FRS3
TDP2
RPS27
RER1
MORN1
FLT3LG
ACOT13
TRAPPC6A
TLR4
FDXR
BLOC1S3
ZC3HC1
UCHL5
TRNAU1AP
TIPRL
RO60
KLHDC10
KDM4D
KAT6A
CWC15
PSMD5
MLLT1
KNL1
KCNH1
RBSN
RABEP1
TSACC
FBXO38
CCT3
MRPL24
SLC35B1
GPR108
RAB11A
SPRY1
GOT1
ZNF830
VPS72
TRAF3IP3
NOL6
MKNK2
MIS18A
CCT6B
AHCY
SP2
ZNF687
HEXIM2
RPS23
ATP6AP1L
ALG10B
VPS26C
SLC39A3
NMNAT1
LZIC
ATP5MC1
SMG6
ZSWIM4
SAMD4B
LOC645177
FBXO11
C12orf77
TSSC4
CNOT1
PXMP4
DNM2
KRR1
TBC1D10B
MYLPF
CASP8AP2
SSBP2
ZC3H6
SYNGR4
EPS8
OSBP
NFATC2IP
DOLPP1
P4HB
MRPS17
ATF7IP
LARS1
STK17A
POLR3E
NSUN4
MAP1LC3B2
IGSF8
CCNI
XRCC4
TMEM167A
SETD1A
RFX5
PHF1
H4C9
CCAR2
TBC1D19
PRDM10
WDR24
TMEM259
NOTCH1
NIP7
ETV5
COG8
BARHL1
THOC5
NRTN
NCKAP1L
PSMD3
REEP6
PRPF8
PIP5K1A
PCSK4
FBXO40
CDK5RAP3
RUVBL1
DOCK8
CYP19A1
ANKRD39
RGS9
TADA1
UFC1
MED18
LAX1
ACTR2
LRRC8A
KYAT1
HDGFL2
AP3B1
OAT
NELFB
MRPL27
HUS1
FAM117A
EME1
ZNHIT2
NR4A1
ATG5
TRUB2
COQ4
AP2A1
SP1
COPS7A
MRM3
GLOD4
PARP8
GSPT1
SUZ12
RGS1
FAM160A2
MRPL1
ZNF669
ERCC1
ZNF384
KDM4B
STX16
ENSA
MTOR
CTNNB1
ZBTB45
RPL24
ERCC2
TNFRSF19
ADAMTSL1
CLPB
UNK
FEM1A
H4C11
DDX49
COPE
UCKL1
BOD1
PHF12
IFRD2
RWDD1
CHMP4B
AP2S1
VPS50
HEPACAM2
FBXL19
PHB
CALCOCO1
TCEA2
RAB5B
MMACHC
CCDC163
H4C2
SUCLG1
DDX23
H2BC4
IFTAP
HIKESHI
TMEM115
SLC25A25
NAIF1
MAPKAPK5
ANKHD1-EIF4EBP3
ANKHD1
WDPCP
MDH1
PAK1IP1
C6orf52
WDR74
PES1
DFFA
NEBL
THRAP3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NCLN
TBL1X
PPP1R12B
ING4
CALR3
C19orf44
BANP
PRCC
TSN
ZFYVE1
TSNAXIP1
RANBP10
RPS7
RPS20
VIPAS39
AHSA1
TOM1L2
DRC3
PEMT
GALM
SMPD3
FAP
GTF2H4
C16orf91
TSC2
NTHL1
PPRC1
TMEM208
PNKD
LRRC29
AAMP
SYMPK
FOXA3
INTS9
HMBOX1
ELOC
RPL32
PNPLA6
ZNF225
RPS3
NUP205
C19orf53
ST3GAL2
INVS
ERP44
ZNF268
CCDC90B
HNRNPC
LRCH4
FBXO24
UBQLN4
LAMTOR2
ZNF547
TRAPPC2B
ORMDL3
SCAF1
BUB1B
POLDIP3
ZNF143
SUPV3L1
C1orf159
FASTKD1
SLC35E2B
RANBP2
ZNF165
FAM168A
NUDCD1
ZNF17
PSMD11
CCDC146
DSTYK
GPR137
NDC80
METTL4
H4C5
UFD1
OAZ3
MRPL9
CDC45
TBL3
SNX17
EIF2B4
DYNC1I2
ZNF383
TMEM94
NPRL2
CYB561D2
CRTC2
SPSB3
ZSCAN22
SUPT7L
SLC4A1AP
G3BP1
BMF
STAM
TFPT
PRPF31
PIN4
STT3A
CACTIN
GATB
SP5
UFSP2
SART3
ISCU
VCPIP1
C8orf44-SGK3
SCRIB
SIRT2
NFKBIB
ZNF140
CYCS
UBAC1
TSNAX
SNX16
ACTR1A
HRCT1
MICOS13
HSD11B1L
FARSB
STIP1
RNASEH2A
NUP107
COMMD9
NR6A1
TIMM21
FBXO15
TMEM60
PHTF2
VTI1B
COX16
DDX39B
CCDC174
ING3
ZNF235
THOC6
HCFC1R1
KHDC4
LMAN2
WDR46
PFDN6
RPIA
ZNF417
SPHK2
RPL18
CNIH4
EHF
E2F4
PANK4
MRPL53
UBR2
ZNF335
SEC61B
ALG2
ZNF444
POLR2E
TRDMT1
REXO1
PIGL
ANAPC5
EFTUD2
CCDC103
H2AC6
SEC11C
RBM42
TRAF7
ZNF576
IRGQ
DDX41
KBTBD6
PNN
TMTC3
CEP290
CAND1
GOSR2
NMT1
DCAKD
MRPL21
IGHMBP2
SMG8
METTL3
ISY1-RAB43
ISY1
NUCB1
LIN37
EIF3F
SRSF11
LRRC40
C19orf48
MED27
AHCYL2
NME1-NME2
NME1
SLX4IP
TTI2
TMEM242
ZSWIM3
ACOT8
RNF121
LOC100133315
ZFYVE19
DNAJC17
DCAF7
UTP11
HNRNPL
CDK5RAP2
EIF2AK3
CCP110
ZFPL1
CDCA5
SLC8A1
TATDN3
NSL1
COX7C
NUDT13
NFIB
PSMB6
TCERG1
ATP5F1B
GSK3A
ZMAT2
H4C8
GTF3C3
VWA5A
RPS27A
IPO13
CLHC1
PHB2
BUB3
NEDD8-MDP1
NEDD8
GMPR2
GET3
SUFU
SUDS3
PCBP1
KRT15
CLN3
RPS6KB2
EXOSC5
BCKDHA
MRPS7
GGA3
ZNF337
SUGP1
MAU2
C12orf43
MRPL28
SEL1L
JOSD2
SHPK
CTNS
CAPN15
NOC4L
NDUFAF5
ESF1
DDX51
NDUFB5
MRPL47
C1orf109
CTDP1
ZNF691
MITD1
KMT2B
ZNF500
RPL9
LIAS
CTU1
ZNF776
EXOC4
STK36
RNF25
RBL1
ZNF605
EXD2
SMARCAL1
PPP1R12C
SRD5A1
EMC4
RPL18A
KRT23
SEC13
TRMO
GSTO2
VPS25
PABPN1
DLGAP1
TXNRD1
CD2BP2
PEAK1
NOP16
HMG20A
HIGD2A
LYRM4
FARS2
TMEM160
USP48
CIAO2A
VEZT
FGD6
SMAD3
RPL37
CRADD
STAM2
FBXW11
COPS7B
ATP5MG
H2AC19
H2AC18
CCNL1
ZNF211
SLC39A9
MTMR9
ERH
SLC25A19
NDUFA10
PRORP
PPP2R3C
RCAN1
MARS1
ARHGAP9
DMAC1
NDUFB3
MTRF1
FAM126B
ZCCHC4
TPRKB
MAF1
TM9SF4
STK25
DYNC2I2
RABAC1
ZNF688
SESN1
GUF1
CEP57L1
TBP
PSMB1
ZNF420
ZCCHC8
VARS1
VRK1
PSMC5
FTSJ3
FCF1
AREL1
TOR1AIP1
PLEKHM3
SF3B3
COG4
CCDC124
SREK1IP1
HSPA9
CWC27
HEMK1
ZNF628
NR1H3
ACP2
API5
ZSCAN5A
RPL21
BMERB1
EIF4A1
ABT1
SF3B5
NVL
ZNF286A
RPGRIP1L
FTO
THAP1
EIF4A3
CGGBP1
ALKBH3
ZSCAN32
ZNF174
XPNPEP3
ST13
ZNF548
ATP6V1G1
PEX3
ADAT2
FLOT1
ABCF2
CENPA
HBP1
RPL14
MED24
ADPRS
CCDC59
TMEM63C
RAB5C
TXNL4B
TIMMDC1
DHX38
ASXL1
MPV17L2
MCAT
ADO
UQCRC2
TPGS1
PEX26
ZNF56
RTRAF
RTF2
KCTD5
VPS52
RPS18
PDE6D
TTC33
TRMT10C
TGIF1
COX7A2L
TRAPPC3
UBC
SNRPB
KAT6B
HEXA
NDUFC2-KCTD14
NDUFC2
NUP153
MAP2K3
CELF3
ZNF608
PARP2
BTRC
SNRPD3
LAMP1
GUCD1
DHX33
AP1G1
SNX15
DCP1B
PXMP2
POLE
RPS13
COPS8
LAS1L
ZNF26
MRPL20
SMG5
RTEL1
CWC25
UBB
RBM25
WDR83OS
WDR83
TMX2
MED19
FDPS
ZNF749
ZBTB38
ZNF565
ZNF146
SCYL3
MRPL44
ZNF552
GEMIN6
SPC25
FOS
ZNF226
SAP30BP
RECQL5
FAM156B
FAM156A
NFKBIL1
ATP6V1G2
NCDN
KIAA0319L
CDK8
RPL29
DVL2
ZNF584
ZNF419
RANGAP1
RABL2A
MAMSTR
FOXP2
WBP2
SART1
ATG4C
TBCK
MED6
AIMP1
RARB
C3orf38
ATXN2L
TMEM109
SNAPC3
PSMD1
IFI44L
DDR2
CSTF1
AURKA
GABARAP
NDUFAB1
NDUFA2
IK
MTR
FBXW9
SLMAP
HIRIP3
TAF6
PTGES2
PNISR
IDH3B
DESI2