ChIP-Atlas: Target genes

Potential target genes for SOX9

Query protein: SOX9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX4065347 | hESC derived retinal cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SOX9's Target genes

◢ SOX9: Average

◢ SRX718108: hESC derived pancreatic cells

◢ SRX4065343: hESC derived retinal cells

◢ SRX4065344: hESC derived retinal cells

◢ SRX4065345: hESC derived retinal cells

◢ SRX4065346: hESC derived retinal cells

◣ SRX4065347: hESC derived retinal cells

◢ SRX4065348: hESC derived retinal cells

◢ SRX11220467: HT-29

◢ SRX11220468: HT-29

◢ SRX768290: HT-29

◢ SRX11416753: KARPAS-422

◢ SRX11856133: LNCAP

◢ SRX11856134: LNCAP

◢ SRX11856137: LNCAP

◢ SRX11856138: LNCAP

◢ SRX11856139: LNCAP

◢ SRX11856140: LNCAP

◢ SRX11856141: LNCAP

◢ SRX11856142: LNCAP

◢ SRX359919: LoVo

◢ SRX10175282: PANC-1

◢ SRX10175283: PANC-1

◢ SRX1510444: VCaP

◢ SOX9: STRING

SNX16
ARRDC4
HBB
DOLPP1
KHSRP
ZNF775
PRKACA
RNF13
SLC25A42
RRM2
FAM83D
HMGCS1
FAM72C
FDFT1
RASSF7
LMNTD2
SPATC1L
SRGAP2C
FAM72B
ZFAND4
KAT7
TOM1
NFYC
ALKBH7
MAF1
SRGAP2B
FAM72D
HLTF
CNOT1
SRGAP2
FAM72A
SLC35E2B
MTRNR2L8
MTRNR2L2
SLC35E2A
TINAGL1
RGPD2
RGPD1
POR
C2CD4D
SNAP29
PI4KA
TAF15
GPSM3
POLG
IQCH
AAGAB
PARK7
NOXO1
SH3KBP1
PRKCI
CDC25C
PPDPF
PDXDC1
KLK6
PGBD4
EMC7
FAM53C
PPIB
EIF3B
PRDX2
OGA
ANKRD13A
CDYL
PFDN4
MTF2
CNOT6
RHBDD3
EWSR1
PHRF1
FRAT2
AKIRIN1
LSR
ATG101
PIK3R3
EED
PTDSS1
MTERF3
SLC35A5
PCDH1
ATG3
GNB2
PRR19
PAFAH1B3
STIP1
MYO9B
HAUS8
ATG16L2
MRPS24
CDCA7L
YY1AP1
DAP3
NDST2
COMMD6
UBE2C
UIMC1
TMEM160
BZW2
ANKMY2
PTOV1
PMVK
KCNH8
LAMB3
UROS
BCCIP
BRAT1
USP15
UCHL3
CENPN
SLBP
ACSS1
FOS
FRAT1
WASL
ZNF219
DNMT1
FLCN
SETD5
FUS
STK35
BCL6
HNRNPL
CDON
MYH14
SHKBP1
DNAAF3
MTRNR2L9
C21orf91
CCNL2
TSPAN4
POLR2L
CIC
TEPSIN
NDUFAF8
DBP
ZNF8
PAXIP1
UNKL
PROSER3
HSPB6
PRKDC
MCM4
ETNK1
MBLAC1
ARNTL
NOL8
CENPP
PSIP1
SELENOW
RRBP1
UBE2B
CDKL3
RBM7
C11orf71
RPL35
ARPC5L
RAB4B
PRDM10
PDE8A
LIN54
ATP6V0C
SPTBN1
HHIPL1
CCDC85C
MYL12B
TIGD5
EEF1D
PIP4K2B
TMEM45A
FRMD5
XRRA1
SPCS2
RPN2
MROH8
AP2A1
UFSP2
TOP2A
TANGO2
ARVCF
RMND5A
C6orf226
ULK4
NUCB2
MLST8
SYVN1
DGAT2
SLC5A1
CDIPT
PLEKHG4
MYL12A
PPP5D1
CALM3
MTBP
MRPL13
CCDC59
CNOT3
TARDBP
UBA1
RNASEK
ZFAND3
ZNF335
FANCI
ANP32A
TTLL7
TRAF2
PSMD14
SOD2
PNN
OXR1
PGP
SERTAD1
MRPS11
MRPL46
TUBB4B
SMC3
ZNHIT1
PLOD3
MSANTD4
TP53BP2
PRCP
DDIAS
PPP1R13L
HDAC2
RMND5B
ITGA6
RPL22
UQCRQ
GDF9
PRR3
GNL1
CFDP1
OGDH
DPP9
ADAP1
ANKRD39
ZMYM2
LUC7L2
TBC1D17
AKT1S1
SS18
RNF103-CHMP3
HDAC1
STX16
ACAP2
FBXO5
ABTB2
DISP3
HNRNPA1
CBX5
SP2
UQCRC2
TLE3
PANK2
WRAP53
TP53
CENPE
GTF2IRD2B
ANKRD12
KIF1B
RPL19
NOCT
ARAF
HOMEZ
CYP2R1
MRPS31
PLAG1
CHCHD7
TCP11L2
THOC1
ATP8A1
UBE2A
MTCH1
USP3
SSBP1
ATP5MC1
NDUFB1
CPSF2
KCTD2
ATP5PD
SRI
STK32C
LRRC27
ZMYM5
NR6A1
SKA2
PRR11
MYT1
LRCH4
FBXO24
PTP4A2
NCDN
KIAA0319L
VBP1
PCLAF
C7orf57
TMPRSS3
LANCL2
ZNF609
UFD1
CDC45
MAT2A
TMEM260
PDK2
WASHC5
NSMCE2
NWD1
KMT5C
FMC1-LUC7L2
FMC1
CSNK2A1
NLK
ISOC2
COQ8A
BAZ1B
POLR1G
EFNB2
GGNBP2
HMGB1
FOSL1
SLX1B
SLX1A
BOLA2B
BOLA2
OSBPL2
TMTC4
USPL1
PIF1
DOHH
GTF2IRD2
PPP6R1
MIA2
PRKAG2
C2orf42
PMF1-BGLAP
PMF1
LEMD2
ZNF300
MIA3
STXBP3
DAZAP2
SSNA1
ANAPC2
ZNF687
FGFR4
MEIS1
ANKHD1-EIF4EBP3
ANKHD1
KCTD7
OSBP
FMN1
ARHGAP19
ATP5F1B
H3C15
H3C14
AP3S2
WDR62
THAP8
KCNAB2
PAIP2B
PELATON
HNRNPUL1
ATAD2
FAM110A
SELENOH
HNRNPC
ACTN1
HDGFL2
PRRC2B
CD164
HECTD2
ATF7-NPFF
ATF7
OPA3
UTP23
RBM42
AK2
RASEF
TADA3
ARPC4-TTLL3
ARPC4
ZSWIM4
CCT5
ATPSCKMT
UNG
TTBK2
CANX
ZNF572
TMEM168
SMARCD2
LEPROT
LEPR
ECPAS
GATAD2B
FAM227A
CBY1
RAB33B
ACAT2
PELI1
ZNF574
EIF2AK3
MADD
FANCF
MGRN1
HYAL2
UTP18
MBTD1
IVD
PSPH
CCT6A
FAM227B
DTWD1
ABCB8
BOLA2-SMG1P6
CFAP221
TRIP4
ATP5IF1
ING1
ARHGEF38
RABGEF1
E2F6
SF3A3
RFX1
SMARCAL1
CALR
SLC25A38
H2AZ2
CALU
INAVA
NUF2
FASN
GOT1
ZCCHC4
PRMT1
KATNB1
COPS5
PAK4
GIPC1
DGCR8
CDK16
LRPPRC
RTKN
EIF2D
ASH1L
TES
MOCS3
DPM1
RNF6
RLN2
TMEM218
SREK1IP1
CWC27
G3BP1
EFR3A
ABHD2
MRPL21
IGHMBP2
YJU2
PKNOX1
PLPP2
TYK2
RB1
H3C6
SIPA1L2
MRPL45
ENPP5
RBM27
PTCD3
POLR1A
YIF1A
NARF
F11R
CKAP5
SIRT2
NFKBIB
SP1
ALDH4A1
ZSWIM1
CCDC102A
TFPT
PRPF31
CEP164
LRATD2
NECTIN3
PPFIA3
C19orf73
POLR2J3
LRRC61
ACTR3C
ZNF564
PPWD1
CENPK
CFAP77
ITGB3BP
GGCT
EFCAB7
ECHDC2
COA1
H4C15
H4C14
ATG9A
ANKZF1
KANSL3
MTMR12
SRXN1
STX18
SPRYD3
PABPN1
GATAD2A
DIAPH1
DOT1L
MPHOSPH8
DCUN1D4
KLF5
FSIP1
CUL2
RUVBL2
GYS1
FAM228B
RMI1
HNRNPK
TNRC6B
ENSA
TPBG
SPTLC2
RAB28
KLF6
CWC25
RAB7A
PRKCZ
LSG1
KANSL1
JPT2
NUP107
CENPA
DNAJC14
HBP1
ADPGK
GTF2H2
HSCB
CHEK2
DYNLL1
KMT2E
NDUFS3
KBTBD4
CCNB2
EGR2
WDR45
TOM1L2
DRC3
DIAPH3
ATP5F1E
TMEM209
IFT52
PDIA4
ANLN
RLN1
CDKN3
PLEKHG5
P4HB
FCHSD2
MTMR14
EIF3F
TMEM242
SLC24A1
SEPTIN9
SAP30L
PACSIN2
INTS14
CDK5RAP2
PTCD2
MRPS27
KANSL2
AFF1
ZNF484
PPP2R5A
CNPY3
PRR14
SUPT20H
SORT1
RAB40B
MZT1
BORA
ZNF143
CHCHD6
SC5D
FRMD6
BCAS3
SDF2L1
SPSB3
TOMM40
PPP6R3
AAR2
FBXO33
ZSCAN22
USP31
GSN
PRDX1
LENG1
GPR108
COPS7B
RAVER1
GTF2H2C_2
CEP63
ANAPC13
TESK2
CYTH2
RAB40C
NPL
SCAND1
ZNF862
RBM28
SRM
LDHA
RUVBL1
TDRKH
POLR3B
H2AC19
H2AC18
SLC46A3
MAPK9
NF2
HGS
ARL16
ZNF138
FAAP24
CEP89
DENR
AKR1E2
HSPA5
FOXA2
SH3TC2
METTL3
FRYL
ETV6
LMTK2
HIBADH
IER5L
ANKRD17
PLXNA3
MRPL40
HIRA
SPATA17
GPATCH2
GALK2
COPS2
WASF2
RCL1
INTS12
GSTCD
SNX17
EIF2B4
CAPS2
ZNF92
PAQR4
BCL2L1
TBC1D10B
MYLPF
ZNF77
RAB5B
HEXA
COMMD2
UGP2
OTUD7B
MAOA
H4C12
NAT10
DNM2
GOLGB1
TSPAN31
SIGMAR1
VPS26B
NCAPD3
RPS29
RPS19
EIF4A1
SPAG7
ARHGEF7
GTF2H2C
UCKL1
SPATA5L1
GATM
WDR36
UQCRH
LRRC41
FAM126A
TPRN
HINT2
HSP90B1
RCN2
RBM48
PEX1
NOL7
MRPL44
TATDN1
PTPN13
NDUFB9
STAT1
DRAP1
C11orf68
WDR74
RWDD1
SHOC2
MRPS23
BBIP1
ALKBH3
NDUFS7
SRPK2
RITA1
DDX54
BICD2
GOLPH3L
ARHGEF5
DPY19L4
SLX4IP
MED23
LYRM1
IMMP1L
ELP4
DCUN1D3
PXMP4
SKA3
SDHAF1
MRPL57
GBA
EIF1AD
BANF1
UBN1
GLYR1
MAP1LC3B
FBXO31
TTC26
EHBP1
TMEM60
PHTF2
TBL3
TARS1
PGBD2
H2BC12
H2AC12
RBBP6
PPP4R3B
RNF139
WDR11
LOC101927572
HMGCR
FLAD1
ALKBH6
WDR61
CCDC77
ZBTB3
OBP2B
COMMD9
RAB11B
KAT6B
ISG20
NSA2
GFM2
ZFYVE21
XRCC3
CPSF4L
ERCC5
TMCC3
GTF3C3
FAM98B
LAPTM4A
DROSHA
C5orf22
IGSF9B
DUT
STRIP1
SLC44A1
NUDT2
KIF24
HACD2
ZDHHC5
SETDB2
FRA10AC1
CAB39L
ARL14EP
TMEM65
RBM14-RBM4
RBM14
MYH9
ZNF273
AP3M2
LRRC45
CENPX
WHAMM
CCDC12
GARS1
RBBP5
CDK12
AP2B1
CXorf56
USP1
UBE2I
MACO1
TCERG1
RPS7
GET3
CBLB
TUT1
ZBTB45
PEX3
NLE1
ADAT2
TIMM50
SFXN5
TSR3
TMEM94
GNPTG
STRIP2
SASH1
MED30
LMO7
CBX8
FZD1
TMEM222
SZRD1
GET4
TDRD7
AGFG2
ZNF212
SLC35B4
MRM3
GLOD4
DHCR7
CLDN3
TTC23L
VDR
SF3B6
RTTN
MTIF2
CCNI
NDUFB2
KPNB1
FAM20B
TPST1
PGAP2
RGMB
ZNF165
MSH2
SPNS1
SLC11A2
FFAR4
ERV3-1-ZNF117
ERV3-1
EFNA4
RECQL
GOLT1B
FAM133B
USP48
HAGH
FAHD1
ZNF180
CLTC
OPRD1
RPL37
PTMA
ZNF830
CCT6B
XKR8
LRRC6
AMACR
RPL13A
SSR3
MAN1A2
FAR1
TTC30B
TRMT2A
RANBP1
CXXC1
HSD17B12
WDR93
PEX11A
KDM4B
HNRNPA2B1
CBX3
MAN2C1
SUPT7L
SLC4A1AP
LAMP1
GATA2
CBWD5
ZMPSTE24
WDR70
TRAPPC9
PLEKHM3
NOL11
MRPS15
DSTYK
DNAJA4
C1orf174
NUP42
HNRNPAB
SLC3A2
PRKCSH
MRPS35
CCDC151
MBD4
IFT122
CCDC174
ZSWIM3
RAD21
ACOT8
GRK6
NAGPA
DCAF7
CLN5
TATDN3
NSL1
MRPS33
TRIB1
ATL3
ZNF654
RPS6
MAST4
ERCC6L2
CGGBP1
STAT3
SMC4
IFT80
H2AJ
ACTL6A
TOB1
SUPT5H
AHCYL2
GLRX5
VIRMA
OTULIN
GCA
RRP15
DDA1
ZNF680
SECISBP2
PTBP1
EHD4
DPP8
RAB3A
MIA
ALG10B
GLO1
MYH10
C8orf76
SECISBP2L
STK11
CCDC61
MAMSTR
ZNF770
H3C3
CDT1
NAGK
ZSCAN25
DNAJB5
ZNF576
ZBTB20
IRGQ
TRMO
RPS13
RPS20
PRPF40A
LMAN2
COG2
ARL6IP6
WDPCP
PSMC4
NCOA5
MDH1
CTPS1
SARNP
ORMDL2
ORC5
MORN4
FKBP3
SPHK2
AKAP8
ZNF672
WASHC2C
UBALD2
RPL5
NUDT16
CYP4F11
RALY
PPM1D
PBLD
HNRNPH3
RPL18
GTF2H3
EIF2B1
SYS1
ASPM
TXNDC15
RHPN1
DDX41
TMEM248
MCIDAS
LSM5
ERCC1
VPS50
RPS3A