ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10562781 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◣ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Slc6a16
Tomm5
Cdk15
Cltc
Rbks
Babam2
Enpp4
Dedd
Palb2
Dctn5
Mkrn1
Hivep3
Fubp3
Mymx
Gm3667
Cdx1
Psmd3
Asmt
Tmem191c
Adgra2
Mtf2
Dusp9
Tcp11
Rpl22
Agbl5
Tmbim4
Dppa2
Amdhd2
Snrpb2
Exoc2
Sugp2
Armc6
Ankrd28
Fbxo31
Pomt1
Ifitm7
Bmerb1
Denr
Ndufs7
Vamp4
Slc43a1
C1qa
H2-Bl
Smarca5
Sspn
Mbd3
Ctnna3
Exd1
Chp1
Ttpal
Pdcd5
Guf1
Zdhhc18
Trmt2a
Ranbp1
Ppdpf
Ercc2
Kmt5b
Mettl26
Phf5a
Aco2
Ilf2
2610042L04Rik
Rbsn
Ttk
Dnase2a
Cox19
Iqgap3
Sfi1
Tfrc
Atp6v0b
Knl1
Ubr4
Letmd1
Vps28
Rab11a
Gm3739
1810020O05Rik
Kmt2a
Tspan9
Mylpf
Rilp
Dux
Plekhb1
Smarcc2
Clcn4
Vps13d
Lamp1
Hrob
Ndufs8
Oxnad1
Dph3
Rhobtb1
Odc1
Tia1
Gins3
Polg
Gm2237
Ccdc107
Mrps15
Acp6
Ghdc
Sycp3
Wbp4
Elf1
Txnl4a
Gm16286
Rps29
Gm10406
Ifnz
Gm13276
Alkbh7
Zbtb40
B4gat1
Icam1
Kctd5
Phc1
Gnb2
Fmc1
Gne
Cpsf1
Cacnb3
Znhit3
Unk
Pyroxd1
Erdr1
Herc4
Stard6
4930503L19Rik
Tm7sf3
Sacm1l
Kdm8
Spata33
Chmp1a
U2surp
Usp31
Acp5
Sbno2
Nipsnap2
Lsm5
Gm13283
Mynn
Amt
Snx12
H4c12
Rab3gap2
Dph1
Nek2
Mllt6
Ap1b1
Med16
Mettl25
Ccdc59
Sdha
Ccdc127
Snx18
Fam25c
Taok3
Slc35d1
Myrf
Etfa
Adprhl2
Fyco1
Snrnp70
Ubc
Abcb7
Ncam1
Efcc1
Tex14
2610301B20Rik
A930018P22Rik
Zfp984
Atp6v0d1
Atp2a2
Dok4
Prmt8
Ccdc124
Npas4
Gm3752
Prss47
Uspl1
Kansl3
Lipe
Mfsd1
H2-Q8
H2-Q6
Mtg1
Rarb
Poldip3
Atxn7l2
Knop1
Iqck
Tbrg1
Dhx32
Snrpa1
Trim6
Psma2
Mrpl32
Rbm48
Pex1
Gm3448
Gm3417
9030025P20Rik
Lta4h
Gpcpd1
Tti2
Mief1
Cyb5r4
H2-Q9
H2-Q7
Clpb
Slc39a3
Plekhg4
Plekhg2
Hagh
Fahd1
Sh3glb1
Kcnb1
Gm3264
Utp3
Ube2j2
Spink10
Fbxo38
Cc2d1a
4930432K21Rik
Eif4e
Lman1
Ndufs1
Eef1b2
Telo2
Gtpbp4
Adnp
Uqcc2
Ptpmt1
Gipc2
Dcaf10
Ndufa6
Wsb2
Irf5
Dcp1a
Rrs1
Cog6
Rasl10b
Sumf2
Mlst8
Med4
Gm10130
Fus
Uqcrc1
Trip4
Saysd1
Ptcd1
Cpsf4
Snrpd3
Gucd1
Cryzl2
Usp30
Msh4
Muc1
Cenps
Eapp
Gm3005
Crtc1
Srp19
Cdk5rap1
Ap3s2
Cstf1
Aurka
Polr3e
Drg2
Cdk12
H2bc22
H2ac22
AU041133
H4c18
Hspa5
Mrpl44
Ptprz1
Mrs2
Cct8
Mkrn3
Sppl2b
Lsm7
Cacng2
Vps29
Rad9b
Zmym4
Zfp948
Tcte3
Gm3435
Atxn2
Nudt15
Get1
1700102P08Rik
Fam32a
Chchd1
Preb
Styxl1
Mdh2
Tsc1
St3gal3
Man2b2
Dffb
Cep104
Btbd9
Slx1b
Tcea1
Klhl20
Pstk
Hemk1
Taco1
Stx12
Pcyt1a
Clptm1l
Rab8a
Vwa8
Fignl1
Trmo
Cilk1
Pigc
4930558K02Rik
Cdk5rap2
Mrpl39
Psmb2
Fam53c
Slc9a1
Ptp4a1
Pemt
Ube2f
Qrich1
Pafah2
Ogfod3
Hexdc
Mif
Cnot2
Ndrg3
Aurkc
Adrm1
Ndufaf1
Rps3a1
Ddx56
Tbc1d14
Mtdh
Oga
Ywhae
Man2c1
Med6
Bhmg1
Wdsub1
Dguok
Ddost
Nsfl1c
Osbpl1a
Trmt10c
Ndufab1
Mrps28
Dars
Syce1
Wdr77
Atp5pb
Wdr82
Aip
Ambra1
Btbd8
Agk
Mpc1
Mrpl4
Hdac2
Pex14
Gm7347
Dpy19l4
Ints14
Them6
H1f2
Rtcb
Zcchc4
Faah
Gm21190
Pip5k1c
Ccni
2010109A12Rik
Rrm1
Dnm1l
Tfdp1
Stk31
Klhdc10
Grcc10
Ybey
Mcm3ap
Pom121
Rbck1
H2bc7
H2ac7
Dpp9
Gm3636
Zfp770
Ankrd13c
H4f16
Hexa
Mdk
Snx29
Rad23a
Fank1
Mcm6
Mrps33
Snrnp27
Lamtor3
Tbcb
Polr2i
Gm13285
Gm13275
Gm13272
Cherp
Gabpb2
Bcas2
Gm13287
Nsun3
Nudt9
Mapk14
Vmac
Ndufa11
Rmnd1
Armt1
Nup214
Itgb1bp1
Cpsf3
Selenot
Car3
Gm3411
Ufsp2
1700029J07Rik
Gtf3c5
Usp21
Nfyc
Oasl1
H4c8
H4c3
Slc15a1
Trim29
H3c6
H3f3b
Rdm1
Srsf7
Polr2a
H3c7
H2bc9
H4c4
H3c11
Adam5
H3c15
H3c14
H4c11
Ing1
H3c2
Mettl14
Crebzf
H4c9
H3c3
H2ac19
H2ac18
Gm20594
H3c13
H2bc18
H2bc21
H2ac21
H2ac20
H2bc4
H2ac6
H2ax
Trib3
Hnrnpab
Bmt2
H2bc12
H2ac12
H1f4
Arrdc2
Jund
Nabp1
Rsrp1
H3c10
Btg2
Mphosph9
2810006K23Rik
H4c17
Ubb
Hspa8
Taf4
H4c1
Scn8a
Calr
Zbtb37
Tob1
Arid5a
Arf4
Taf13
Gtf2a1
Ints6
H3c4
Pcx
Porcn
H4c2
Dcpp1
Hexim1
Rpl3
Calm2
Sde2
Nufip2
Junb
Utp14b
Acsl3
Mpp7
Sgk1
Hsp90aa1
H3c1
Stk3
Srsf5
Insig1
Sntb2
Csrnp2
Sumf1
Haus1
Atp5a1
Ppp1r10
Mrps18b
Dnajb9
Uck1
Pbld2
Gtf2a1l
Klf6
H2bc6
Dgat2
Arl15
Ddit4
Calm1
H4c14
Rbm14
Gm21992
Gtf2b
Gpx1
Sub1
Ctsl
Ier2
Znfx1
Raf1
Atp1a1
Cbx4
Pnp
Aplp2
Gadd45a
H2ac4
Cited2
Actb
Jpt1
Tas2r134
Eif4g2
Rnf19b
Tsc22d1
Rnaset2b
BC005537
Clu
Mat2a
Tubb4b
Ermard
Prdx1
H2bc11
H2ac11
Errfi1
Eif2s3y
Rnaset2a
Cox17
Srsf2
Mfsd11
Sf3b1
Dag1
Eif4a1
H1f3
Smc3
Mknk2
Mib2
H3c8
Pcna
P4ha1
Mcl1
Arl4d
Wsb1
Hsp90ab1
Srsf3
Dhx8
Zfp36l1
Btg1
Amd2
Amd1
Hnrnpa2b1
Cbx3
Gtf2f1
H2bc13
H2ac13
Mrpl37
Cyb5rl
Amacr
Selenbp1
Arl6ip1
Trp53inp1
H2bc1
H2ac1
Slc38a2
Ftl1
Vegfa
Ifrd1
Sephs2
H2ac10
Slc38a5
H2bc8
H2ac8
Ier5
Mill1
Gcm2
Spg11
Zfp710
Tuba4a
Kcnn2
Dmxl1
H4bc24
H2bc23
H2ac24
H2ac23
Marchf3
Ddx5
Cep95
Slbp
Rita1
Cfl2
Gtf3c6
Prdm14
Luzp1
Hjurp
A730008H23Rik
Zfand5
Zfp438
Cpt1a
Tnrc6c
Sqstm1
Rhob
Pabpc1
Ppp1r3c
Dusp1
Fos
Skp1
Acly
Tob2
Klf7
Rcbtb1
Msh6
Vcl
Rnd3
Peli1
Slc25a39
H4c6
Katna1
Dennd6a
Cep43
Slc25a3
Dhcr24
Rps12
Gapdh
Ep400
Msmo1
Etv3l
Dnaja1
Fxyd1
Pigt
Eef1a1
Cnga1
Eif4e1b
Hnrnph1
H2bc15
H2ac15
Gfpt2
Mafb
Abr
Ccnyl1
Slc9a3r1
Inmt
Maml1
Rps3
Epha2
H2-M5
Glul
Rps20
P4hb
Jun
Plk2
Clic4
Ncl
Pdia3
Mbtps1
Catsper2
Snrpe
Mterf1b
Herc2
Dhx9
Gtf2a2
Traf7
Sap18b
Sap18
Cebpa
H2bc14
AU018091
Ctnnb1
Ppp1r2
Mterf1a
Sirt3
Psmd13
Cirbp
Sirt1
Ubap1
Pdcl3
Ttc41
Tra2b
Hsp90b1
Impdh2
Trpm3
Depdc1a
Ipmk
Mad2l1bp
Idi1
Gria3
Itpr1
Fasn
Fanci
Chd9
Tcta
Rhoa
Ankrd11
Hhex
Frmd6
Mertk
Vamp1
Ppp1r15a
Plekha4
Atp5e
Smg5
Pcmtd1
Usp37
Cnot9
Urgcp
Musk
Tsc22d2
Slc25a51
Ndel1
Slc25a30
Sesn2
Slc44a3
Erf
Hmga1b
Hmga1
Napepld
Susd6
Map1lc3b
Gls
H2bc3
Klf10
Rps6
Paxip1
Creld1
Por
Txnip
Pdhx
Apip
Fdx1
Klhl21
Dusp5
Dnajb1
Mrpl1
Lilr4b
Acer2
Caap1
Ncoa3
Gpx4
Dnajb4
Chchd2
Nfkbia
Il1b
Hspa1l
Hspa1a
Mylip
Ciao2b
Rsrc2
Kntc1
Cdkn2aip
Ifna6
Rnf103
Asb2
Med23
Kdm4c
Socs3
Dgat1
Ccdc110
Acy3
Arhgap19
Man1a
Fth1
Chordc1
Atp1b2
Sertad2
Rnf125
Proca1
Gas1
Tagap1
Serinc3
Rps2
Cd81
Rusc2
Rpl7a
Med22
Avpr1a
Txn1
Rpl23
Zfp119b
Slc31a1
Fkbp15
Nudt4
Eif3a
D230025D16Rik
Taf1d
4931406C07Rik
Whamm
Vgll4
Rpl13
Cyp2d9
Ern1
Adpgk
Gm51598
Zswim3
Acot8
Actn4
Irs2
Hspa1b
Rcl1
Cmas
Zswim8
Gadd45g
Degs1
Rplp0
Cebpd
Sertad1
Cyren
Smyd4
Rpa1
Lrrc28
Mapkapk2
Exosc2
Ddx3x
Rps24
Nrd1
Gclc
Rps27rt
Rab13
Cxcl5
Atp5g3
Ncoa4
Glce
Cpm
H3f3a
Ccnt1
Sgf29
Mak16
Igfbp2
Ppia
Nfe2l2
Eef2
Rpl9
Lias
Pcif1
Ulk2
Pdk1
Homer3
Rps9
Rbbp6
Baiap2
Shld2
Glud1
Gpr141
Cyp2f2
Rbm39
Zfp119a
Vmn2r4
Tnnt1
Actg1
Nr6a1
Arrdc3
Nsrp1
Map2k4
Scnn1g
Alox12b
Dip2b
Defb8
Rara
Pik3r3
Mapk1
Pigl
Ncor1
Ankrd39
Klf2
Snorc
Rcn2
Npm1
Hmox2
Gadd45b
Ndufaf3
Tuba1c
Rbm4b
Zfp959
Midn
Plec
Slc5a3
Mrps6
Commd1
Adk
Abcb8
Vps52
Rps18
Tmem39a
Naca
Bbs2
Trappc3
Sod1
Rpl17
Ost4
Map2k2
Ddx24
Ccar1
Zfp963
Slc16a10
Rtn3
Rab33b
Csrnp1
Nfe2l1
Slc20a1
Rpl8
Etfrf1
Casc1
Plk3
Kdm5a
Jak1
Nfkbiz
Ctdp1
Unc5b
Ggcx
Epc1
Eif1
Tpcn2
Slc2a1
Nme1
Cxcr3
Tango2
Ksr1
Cfap20dc
Ttc7
Rnf38
Smurf2
Ppib
Med21
Taf4b
Rnd1
Mob1b
Ly6l
Dnajc1
B2m
Paip2
Ssbp1
Id3
Hint1
Bsg
Rnase4
Ang
Gpat4
Pfn1
Setd5
Rhou
Spry4
Edrf1
Cat
B4galt3
2410002F23Rik
Lgr4
Irf8
Pcf11
Atp5j
Kcnk5
Sgpl1
Tiparp
Pgrmc1
Net1
Fxr2
Herpud1
Top1
Bclaf1
Acer3
Lsm14a