ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520468 | F9
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◣ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Slc15a1
Adgra2
Mtf2
Hivep3
Cdk15
Rhobtb1
Mkrn1
Fubp3
Oxnad1
Dph3
Rarb
Tmem191c
Cdx1
Enpp4
Tomm5
Sntb2
Dusp9
Mylpf
Slc43a1
Dppa2
Phf5a
Aco2
Ifitm7
Bmerb1
Ttk
Phc1
Tcp11
Porcn
Plekhb1
Tm7sf3
Rbks
Babam2
Phf11d
Wsb2
Msh6
Uck1
Zdhhc18
Muc1
Ttpal
Mib2
Tfrc
Eif4e
Hrob
Dok4
Slc6a16
Arhgap19
Abr
Lpar5
Prdm14
Eif4e1b
Ghdc
Ndufa6
Cxcr3
Nr6a1
Gtpbp4
Alkbh7
Mymx
Acp6
Dhx32
Crybg2
Fam25c
Prmt8
Spata33
Chmp1a
Dennd6a
Klhl34
Tnnt1
Arf4
Rnf125
Abcb7
Rab8a
Rxrg
Sdha
Ccdc127
Abcb8
Fkbp8
Bmt2
Dedd
Slc25a39
Ptpmt1
Itpka
Icam1
Pbld2
Ptprz1
Zyg11a
Letmd1
Dag1
Slc39a2
Cog6
Cpt1a
Mllt6
Rbm14
Gm21992
U2surp
H2-Bl
Mpc1
Slc35f2
Gm18905
Nek2
Lipe
Hagh
Fahd1
Irf5
Agtpbp1
Zfp930
Rarg
Fbln1
Taf6l
Mbd3
Gabbr1
Pyroxd1
Gipc2
Sirt3
Psmd13
Mdk
Cst3
Zfyve28
Tspan9
Ccar1
Mrpl37
Cyb5rl
Foxn4
Rusc2
Ppdpf
Ubr7
Cfl2
Ccr4
Cfap20dc
Rcbtb1
Sugt1
Ankrd28
Atp2a2
Dpp9
Cox17
Rpe
Midn
Slx1b
Bola2
Fbxo8
Cep44
Sipa1
Sgk1
Dusp5
Adgrg5
Tmem39a
Gpr180
B230307C23Rik
Stra8
Wdr25
Wars
Dhcr24
Ubc
Fam32a
Pdk1
Wfikkn1
Pbx2
BC028528
Guf1
Cox5b
Aurkc
Racgap1
Hectd1
Rita1
Cep70
Phactr3
Atox1
Slc25a51
Lims1
Otud5
Rnf5
Plpp2
Pcmtd1
Mrpl40
Hira
St3gal3
Ubap1
Chchd1
Stard6
4930503L19Rik
S100a16
Lman1
Fam120a
Capn3
H2-Q8
H2-Q6
Ap1s1
Tab1
Acp5
Tle6
BC048679
Atp5e
Zfp710
Chordc1
Spa17
Siae
Snx29
Ndufa2
Ik
Slc2a3
Msmo1
Ccnb1ip1
Iars
Wnt8a
Dleu7
Wdr26
H2-M5
Zrsr2
Smyd4
Rpa1
Sec24c
Tafa4
A930018P22Rik
Gna12
Cln8
Zfp438
Trpm3
Krt222
Tlr5
Ino80c
Homer3
Rbpj
Iqgap3
Gm48552
Cnpy1
Gm45915
Rasl10b
Robo4
Tdgf1
Fjx1
Dennd10
Tatdn2
Zfp532
Atg10
Lekr1
Atp5j
Faah
Slc25a19
Pdcl3
Slc39a14
Trim56
Usp9x
Camk1d
Rfc4
Prrt3
Kremen1
Shisa5
Luzp1
Cyp46a1
Hspb7
Ciao2b
Abhd8
Knop1
Iqck
Trpm7
Erf
H2-Q2
Gmnn
Nfe2l1
Ppp1r10
Mrps18b
Colca2
Vegfc
Steap3
Kif21a
Cyb5r4
Mrpl45
Mpv17l2
Atxn2
Ankrd9
Trim29
Cryzl2
Ap1b1
Lrp10
Znrd2
Rasl11a
Ilf2
H3c11
Chd1l
Cfap161
Stat4
Spry4
Cacnb3
Arih2
1700019D03Rik
Calu
Asap3
1700102P08Rik
Slc13a2
Grid2ip
Nr5a2
Nr1d2
Rps29
Naca
Nploc4
Otp
Chd9
Zfp319
Usb1
Wdsub1
Amacr
Wdr82
Hexb
Gm14393
Triml2
Ppib
Rara
Akap1
Hhip
Cilp2
Src
Kbtbd7
Fignl1
Grk3
Adap1
Ttc24
Krt79
Mrpl4
Smad6
2310022A10Rik
Gng8
Haus1
Atp5a1
Lefty1
Amt
Rsph4a
Anxa5
1810062G17Rik
Mfsd3
Anpep
Ndufs8
Erdr1
Nt5dc3
Ccdc60
Mrps15
Nanos3
Ilvbl
Vash1
Scd1
Inppl1
Bhmg1
Anapc5
Stk35
Slc39a4
Uqcrc1
Ogdh
Slc25a1
H2-Q9
H2-Q7
Cdk17
Fam169a
Abca3
Abca17
Pgpep1
Ptf1a
Hspa5
Wdr77
Atp5pb
Hint1
Gm45871
Pnmal2
Zfp33b
Arl15
Pigt
Fads1
AI467606
Brwd1
Chchd3
Pla2g15
Zfp770
Mdh1b
Fastkd2
Gdf15
Nr0b1
Hnrnpab
Pfn1
Ist1
Trp53inp2
Otud7b
Heyl
Ccne1
Rgs3
Fam71e1
Emc10
Zcchc24
Tmem253
Dmxl1
Rps24
Yif1b
Slc16a13
Fam122b
Stk38
Dnase2a
Cops6
Sema4d
As3mt
Mettl14
Nectin1
Ubxn8
Cln5
Aqp7
Gpi1
Pex11g
Smarca5
Tmem259
Gjb1
Tmem143
Syngr4
Commd5
Gm8439
Atp6ap1l
Rhox11
Trip12
Fbxo36
Lgi2
Csn3
Gm3696
Por
Pank3
Pou5f1
Vcan
Fbxo7
Tbxa2r
Galt
Spata24
Ttc7
Cnot2
Cenpt
Reep3
Vwa8
Pym1
Gspt2
Dlg3
Arfgef2
Stub1
Pttg1ip
Tube1
Fam229b
Srek1
Lsm4
Csrnp1
Dnajc19
Macroh2a1
Klk15
Fbxo15
Tagap1
Dnajc22
Sulf2
Lynx1
Map1lc3b
Caap1
Ccn2
Spata5
Nudt6
Ntrk1
H2-Q1
H1f2
Tradd
Fbxl8
Pop7
Retn
2610044O15Rik8
Clpb
Agfg2
Rec8
Rps3
Mycbp
Smim7
Pttg1
Mbd2
Etfa
Arhgef19
Hoxa5
Ado
Tsc22d2
Armc8
Spint4
Zfp292
Zfp53
Zfp395
Smyd5
Gjc1
Ctsl
Ndufs7
Lims2
Ifna6
Tasp1
Snx15
Rbm41
Cndp2
Ptp4a2
Dhx35
Ing1
Lbh
Srms
Mobp
Fndc11
Cox6a2
Mrs2
Fam166c
Rp1l1
2610528J11Rik
1700016H13Rik
Tyw5
Maip1
1700008O03Rik
Got1l1
Pex2
Pus7l
Irak4
Otulin
Shoc2
Bbip1
Srebf1
Hax1
Spdya
Kat2a
Dennd2c
Hspb9
Prss47
Paqr7
Bmpr1b
Brap
Acad10
Set
Crem
Aspdh
Pam16
Tm4sf5
Kcnc1
Raf1
Sbno2
Stim1
Trmt2a
Ranbp1
Mrpl16
Pipox
Nr3c1
Mob1b
Grpel1
Mthfsl
Kif2c
Hadh
Sema4b
Bcl11a
Eif2b5
Dido1
Gid8
Npm2
Mif4gd
Cabin1
Emc9
Palld
Rbm47
Xkr5
Dkk4
Cyc1
Rxylt1
Cd38
Tlx2
Ywhag
Nqo2
Ccdc66
Prdm10
Anapc10
Abce1
Ppif
Tbc1d22a
Pdp2
Ogfod2
Nmnat3
Kcnd2
Tiparp
Il33
Got2
Cacna2d3
Acad12
Ankhd1
Ldb1
Uckl1
Abcg2
Zfp768
Cep43
Klhl22
R3hdml
Pth1r
Vmac
Ndufa11
Gpr12
Egr3
D830030K20Rik
Sulf1
Rgl3
Sertad2
Edrf1
Phf14
Ndufa4
Atp5g1
Kcnb1
Gtf2ird1
Sdhaf1
Use1
Ap5s1
3300002I08Rik
S1pr2
Dmtn
Btn1a1
Pspc1
Tmc8
Plac9b
Plac9a
Gm9780
Mapk8
Khsrp
Rfx4
Cbx1
Car3
Acot9
Dnpep
B4galnt1
Acp4
Jund
Hmox2
Ubac2
Ptgr2
Slc4a7
Qrsl1
Tmem121b
Mbd6
Tm9sf2
Mief1
Fah
Szt2
Med8
Elovl6
Sema4g
Msi2
Slc35d1
Dnaja3
Ascc2
Pcolce
Olfr96
Nipal1
Cd164
Pcca
Uspl1
Proca1
Haus4
Gadd45g
Tmem63c
Pik3r1
Acyp2
Nyap1
Nckap5l
Map1a
Whamm
Got1
Mthfs
Clcn4
Fdx1
Gabpa
Itga9
Atp5j2
Bcl3
Sirt6
Ankrd24
Eif2s3y
Rhot1
Mrps33
Gata6
Wdr72
Pcnx4
1190005I06Rik
Prelid3b
Phb
Rcsd1
Klk1b22
Cabcoco1
Rsrp1
Csnk1a1
Pabpc1
Mrps28
Nfe2l2
Gypc
Zfp473
Vrk3
Tmem222
Dnajc4
Aspscr1
Rasgef1a
Srp54a
Tjap1
Tank
Lsm11
Tedc2
Slco4a1
Gm2237
Pes1
Rom1
Eml3
Ripply1
Usp37
Cnot9
Pigl
Ncor1
Nudt16
Rif1
Pibf1
Dis3
Plekhd1
Nsa2
Gfm2
Zfp513
Nfic
Mettl27
Fam199x
2610042L04Rik
Jmjd7
Atl3
Dph5
Sowahd
Crip2
Mmaa
Sucla2
Senp1
Pfkm
Cdc20
Atp5mpl
Ltbp4
Ifitm5
Fzd10
Spp1
Sh2b1
Elovl7
Yars
S100pbp
Wdr7
Sspn
Gm3500
Tppp3
Septin12
Ppp2r3d
Kansl3
Sbno1
Aars
Fam169b
Dgke
Mecom
Tango2
Idh3b
Abcg4
Cep135
Zkscan6
Arvcf
Ctsf
Gga1
Vps13b
Phyhd1
Plpp3
Smim20
Prcp
Blvra
Zcwpw2
Azi2
Dzip1
Trerf1
Grip2
Casd1
Tmem129
Tacc3
Hmces
Zscan20
Gas1
Gm3005
Wdfy3
Zfhx3
Rnf10
Harbi1
Atg13
Trim2
Cdkn2aip
Mrps36
Bard1
Xiap
Oasl1
Get1
Kpna3
Gm5784
Lrp5
Zfp996
Mif
Dhrs7
Sun3
Gm11992
Alas1
Bcl2l12
Mrpl1
Tma7
Ccdc51
Notch1
Zfp3
Sec14l5
Med12
Cox20
Rad51
Tubb3
Wfs1
Satb1
Ctsz
Ano1
Rassf2
Stox2
Sptssa
Nras
Armc4
Eapp
Asmt
Tex14
H4c8
H4c3
H3c6
H3f3b
Rdm1
Srsf7
Polr2a
H3c7
H2bc9
H4c4
Adam5
H4c18
H3c15
H3c14
H4c11
H3c2
Crebzf
H4f16
H4c9
H3c3
H2ac19
H2ac18
Gm20594
H3c13
H2bc18
H2bc21
H2ac21
H2ac20
H2bc4
H2ac6
H2ax
H4c12
Trib3
H2bc12
H2ac12
H1f4
Fam53c
Arrdc2
Gm3448
Gm3417
Nabp1
H3c10
Btg2
Mphosph9
2810006K23Rik
H4c17
Ubb
Hspa8
Taf4
H4c1
Scn8a
Calr
Tcte3
Gm3435
Zbtb37
Tob1
Arid5a
Taf13
9030025P20Rik
Fbxo31
Gtf2a1
Ints6
H3c4
Pcx
Poldip3
Sacm1l
H4c2
Sfi1
Dcpp1
Hexim1
Rpl3
Slc9a1
Calm2
Sde2
Nufip2
Junb
Fus
Utp14b
Acsl3
Mpp7
Hsp90aa1
H3c1
Stk3
Srsf5
Insig1
Csrnp2
Sumf1
Dnajb9
H2bc22
H2ac22
Gtf2a1l
Klf6
H2bc6
Dgat2
Ddit4
Calm1
H4c14
Gtf2b
Gpx1
Cltc
Sub1
Ier2
Znfx1
Atp1a1
Cbx4
Gpcpd1
Pnp
Aplp2
Gadd45a
H2ac4
Cited2
Actb
Jpt1
Tas2r134
Eif4g2
Rnf19b
Tsc22d1
Rnaset2b
BC005537
Clu
Mat2a
Tubb4b
Kmt5b
Ermard
Prdx1
H2bc11
H2ac11
Errfi1
Rnaset2a
Srsf2
Mfsd11
Sf3b1
Eif4a1
H1f3
Smc3
Mknk2
H3c8
Pcna
P4ha1
Mcl1
Ctnna3
Arl4d
Wsb1
Hsp90ab1
Srsf3
Dhx8
Zfp36l1
Btg1
Amd2
Amd1
Hnrnpa2b1
Cbx3
Gtf2f1
H2bc13
H2ac13
Selenbp1
Arl6ip1
Trp53inp1
H2bc1
H2ac1
Slc38a2
Ftl1
Vegfa
Ifrd1
Sephs2
Kctd5
H2ac10
Slc38a5
H2bc8
H2ac8
Ier5
H2bc7
H2ac7
Mill1
Gcm2
Spg11
Tuba4a
Kcnn2
H4bc24
H2bc23
H2ac24
H2ac23
Marchf3