ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX208062 | ES cells
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◣ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Eapp
Tex14
H3c6
H3c7
H2bc9
H3c3
H3c2
H2bc12
H2ac12
H4c11
H4c3
H3c10
H3c11
H3c4
H3f3b
H2bc4
H2ac6
H2ac4
H4c18
H3c8
H2bc22
H2ac22
Gm3448
Gm3417
Tcte3
Gm3435
Polr2a
H4c12
H4c9
H4c1
H3c1
H4c4
H3c13
H2bc18
H2bc14
H2bc1
H2ac1
Rdm1
H2bc11
H2ac11
9030025P20Rik
H2bc8
H2ac8
H2ac10
Sspn
H2bc21
H2ac21
H2ac20
H4c17
Ermard
H4c8
H1f4
H2bc6
Poldip3
H1f3
H2bc13
H2ac13
H4c6
Sfi1
H2ax
H1f2
Gtf2a1
Srsf7
Taf4
Zbtb37
H4f16
H2bc7
H2ac7
Ubb
H3c15
H3c14
H4bc24
H2bc23
H2ac24
H2ac23
H2ac19
H2ac18
Grcc10
H2bc3
Mpp7
H2bc15
H2ac15
Gtf3c6
H4c2
Tob1
Errfi1
Atp1b2
H1f5
Ing1
Srsf2
Mfsd11
Hnrnpab
Ints6
Rsrp1
Mphosph9
2810006K23Rik
Rps12
Fam53c
Calr
Eif4a1
Slc9a1
Jpt1
Npm1
Gtf2f1
Arrdc2
Smc3
Csrnp2
H4c14
Pnp
Eif4g2
BC005537
Tex19.1
Klf6
Cdk12
Nabp1
Gfpt2
Rpl27
Rcl1
Sgf29
Rack1
Ifrd1
Ccdc110
Rpl3
Smarca5
Dhx9
Ccn2
Rpl15
Nkiras1
Urgcp
Hexim1
Nufip2
Ftl1
Hspa5
Srsf3
Hsp90ab1
Ier2
Ier5l
Insig1
Pik3r3
Slc25a4
Sf3b1
Wsb1
Pcna
Ddx5
Cep95
Trpm3
Tfrc
Sde2
Mcl1
Zfp119b
Matr3
Arid5a
Smurf2
Shoc2
Bbip1
Gadd45a
Mbtps1
Dhx8
Sqstm1
Rpl6
Rpl13
Tti2
Lsm14a
Ccdc12
Dnajb9
Arl4d
Rpl23
Rpl41
Btg2
Sub1
Mrpl39
Gls
Taf4b
Nasp
Spg11
Kansl2
Utp14b
Acsl3
Mat2a
Naca
Snrpg
Hnrnph1
Snrpb
Zfp119a
Tmpo
Nme1
Pafah1b1
Caprin2
Pkm
Hspa8
Nop58
Cdc5l
Taf13
Ddit4
Peli1
Cbx8
Crebzf
Pole4
Hsp90aa1
Rps24
Ptpa
Crat
Pabpc1
Txn1
H2aw
Kpna2
Farsa
Erdr1
Fus
Marchf3
Rpl9
Lias
Lman1
Srsf1
Eef1e1
H2bu2
Pdhx
Apip
Unk
Ppia
Gm3667
Dynll1
Gtf2b
Uhrf1bp1l
Rpl26
Med6
Mknk2
Tsc22d1
Styxl1
Mdh2
Fyco1
Hmgb2
Pbk
Znfx1
Zfp959
Nxf1
Rps2
Arc
Tmem270
Mre11a
Ankrd49
Mest
Arl6ip1
Sod1
Rnf149
Kat6a
Srrm2
Hjurp
A730008H23Rik
Ksr1
Zfp943
Zfp942
Ap1g1
Amd2
Amd1
Clcn4
Por
Dusp1
Cirbp
Nfat5
Selenot
Thoc1
Rtcb
Tcea1
Rps27a
Clhc1
Hpf1
Ncl
H2az1
Rita1
Maml1
Ctnnb1
Impdh2
Ddx54
Ppil4
Rtn4
Zwilch
Rpl4
B4galt3
Pigg
Btg1
Psme4
1810009A15Rik
Rps15a
Atp1a1
Rps20
Upf3a
Wiz
Asmt
Mterf1b
Drg1
Srsf5
Prdx1
Rps26
Snx18
Tubb4b
Slc36a1
Tial1
Rps6
Zfp36l1
Hnrnpa2b1
Cbx3
Zfand5
Ppp1r15a
Plekha4
Mak16
Fntb
Rpl7a
Med22
G3bp1
Kcnh1
Ier5
Gapdh
Elp5
Ctdnep1
Sertad2
Dars
Srp54c
Srp54b
Vcpkmt
Rps8
Dhx30
Sephs2
Dgat1
Cited2
Clu
Rhob
Ulk2
Klf2
Ahctf1
Mtpap
Traf7
Eef2
Arrdc3
Calm1
Pts
Cop1
Fastk
Cabyr
Tbrg1
Canx
Gpx1
Smg5
Rcn2
Tuba1c
Ppp1r8
Ubac2
Acly
Ube2s
Timm22
Cdh1
Appl1
Ppcdc
Cep295
Ankfy1
Slc2a1
Fut8
Scfd1
Aqr
H1f1
Snx5
Mgme1
Ccnt1
Stmn1
Rpl35a
Iqcg
Cltc
Agpat2
Calm2
Rbbp7
Tnrc6c
Ncoa4
Pex3
Adat2
Ptcd3
Polr1a
Tma16
Scnn1g
Bclaf1
Pradc1
Cct7
Yeats4
Nudt1
Mrm2
Oxnad1
Dph3
Cep43
Setd5
Sfpq
Rpl19
Hspa9
Srp68
Slc25a3
Srp19
Ppan
Klf7
Rps3
Ccnq
Nprl3
Zfp981
Zfp991
Lyzl6
Rnf19b
Mylip
Rps3a1
Ptma
Hif1an
Spata20
Srcap
Ppp1r10
Mrps18b
Taf1d
4931406C07Rik
Adpgk
Rab33b
Crlf3
Ddrgk1
Psma4
AY074887
Rnaset2b
Rnaset2a
Atp6v0a1
Rrp15
Psmd5
Atf2
Trmt10a
Mttp
Rnf7
Mtf2
Glul
Tra2b
Ubr3
Rapgef6
Ddb1
Tsg101
Mrpl35
Fxn
Rbm39
Ptpn2
Polg2
Map3k3
Dus4l
Cog5
Jade1
Pdia3
Catsper2
Rpl12
Lrsam1
Ddx52
Rccd1
Kdm4d
Cwc15
Trp53inp1
Zfp963
Rps7
Sphk2
Rpl18
Add3
Prpsap2
Psme3
Crls1
Actb
Tcta
Rhoa
Dnajb1
Tdp2
Acot13
Opa1
Rnps1
Tmem80
Deaf1
Smim7
Ptrhd1
Cenpo
Cdkn2aip
Atf6
Bdh2
Adss
Zfp433
Gm32687
Kansl1
Hnrnpc
Gm10406
Arl15
Snrpe
Rplp0
Mapk1
Rpl8
Tm2d1
Ccdc86
Mterf1a
Med21
Usp53
Rps19
Zfp207
Ints12
Gstcd
Dynlt1b
Strap
Skp1
Eif3a
Guk1
Zfp143
Ccnyl1
Cpsf1
Wdr82
Hectd4
Ythdc1
Ephb3
Sac3d1
Gk5
Haus1
Atp5a1
Uspl1
Fos
Napepld
Dip2b
Etfrf1
Casc1
Taok1
Eif5a
Kctd5
Paxip1
Rps9
Vps52
Rps18
Rpl17
Paip2
AU041133
Ahcyl1
Kat8
Nubp1
Blmh
Rnf34
Aldh3a2
Tcf15
Carmil1
Hmga1b
Hmga1
Acer2
Zswim3
Acot8
Ppm1b
Zfp866
Haus4
Nmt1
Ccna2
Sptbn1
Nup62
Il4i1b
Atf5
Slc38a2
Edrf1
Timm17a
Pmf1
Myh10
Rab8a
Fasn
Rpl18a
Ptpru
Rbm34
Ergic2
Cfl1
Etf1
Uchl1
Zcchc17
Snrnp40
Eef1g
Trappc1
Cntrob
Zscan21
Spc25
Dnaja1
Pcif1
Gadd45b
Serbp1
Dbnl
Rpl31
Rptor
Slc25a39
Rsrc2
Kntc1
Slc18a1
Atp6v1b2
Zfp654
Cggbp1
Fbxw2
Rps4x
Smc5
Sp2
Mdh1b
Fastkd2
Ska3
Mrpl57
Fancd2
Emc3
Odc1
Amdhd2
Atp1b1
Chmp2a
Mmaa
Fnbp1
Ttc17
Mrpl17
Zfp97
Iba57
Pigq
Mettl14
Tagap1
Clcn3
5730455P16Rik
Cdc42se2
Cct4
Polr3gl
Copb2
N6amt1
Set
Smndc1
Pfdn2
Nit1
Prr14l
Slbp
Rps27rt
Rab13
Rbm25
Ubap2l
4933434E20Rik
Coq3
Uqcrb
Gm10767
Atxn2l
Cops3
Eef1a1
Mrps28
Pgrmc1
Chmp5
Bag1
Kat7
Bbs10
Kifc5b
Aplp2
Sertad1
Ddx3x
Cpm
Actg1
Tnrc6b
Rad23a
Rab7
Prdm10
Ogfod1
Nudt21
Zfp330
Gosr2
Slc4a11
Irgm1
Pir
Gtf2a2
Txnip
Snrnp70
Tra2a
Csde1
Mlh1
Epm2aip1
Ipo7
Wdhd1
Socs4
Ndufb1
Cpsf2
Rif1
Col1a1
Ckap2
Gpx4
Zc3h13
Ubl7
Mtif2
Id1
Cct5
Atpsckmt
Rbis
Zfp955b
Sdad1
Ints10
Smyd4
Rpa1
Tasor
Slirp
Nrp
Alkbh1
Gm3005
Tbpl1
Srsf11
Pelp1
Arl2bp
Ppp1r3c
Mrpl30
Mitd1
Cks2
Ccng1
Kdm3a
Nsun4
Arhgef7
Mad2l1
Vps4a
Zfp882
Rnd3
Pcnp
Uqcrq
Kctd20
Rc3h2
Micos10
Fah
Zfp868
Atad2
Rpl36
Pcnt
Rpl39
Nqo1
Kmt5b
Ankrd11
Exd1
Chp1
Glce
Ankrd39
Esyt2
Txnrd1
Megf9
Luc7l
Map3k7
Birc6
Fmr1
B230219D22Rik
Rpl30
Dcaf12
Kbtbd8
Dcp1b
Rnaseh1
Cep55
Dmxl1
Sirt1
Atp5e
Nfyb
Gbe1
Eloc
Rps23
Rft1
Polr3d
Xpc
Lsm3
Selenof
Hs2st1
Cdkn1a
Zfp638
Ints13
Fgfr1op2
Ppih
Ccni
2010109A12Rik
Exosc6
Rchy1
Zfp512
Smn1
Ccm2
Cdk1
Arf3
Sae1
Rnf150
Rbm14
Gm21992
Hspa1l
Hspa1a
Atp5b
Spg7
Srek1
Ddx17
Rad1
Brix1
Gtf2h3
Eif2b1
Trak2
Ercc6l2
Ccnb1
Micalcl
Akip1
Hddc2
Dnajc19
Sugp1
Mau2
Wnk1
Ssr3
Sugct
Mplkip
Tgfbrap1
AI597479
Nat10
Tmx3
Rbm3
Oxa1l
Kit
Raf1
Jun
Plk2
Serinc3
Slc7a5
Clk1
Trir
Ywhae
Tmco1
Tm2d3
Zdhhc7
Ccdc88a
Mrpl1
Actn4
Mtr
Tgoln2
Tgoln1
Tmem126a
Tubd1
Rps6kb1
Map11
Ube2a
Ngdn
Rsbn1
Tbcd
Tars2
Snu13
Slc25a45
Gata3
Chic2
Denr
Rad51d
Ptpn12
BC031181
Cfap97
Pnn
Atp9b
Wac
2610507B11Rik
Gpbp1
Angel2
Nelfcd
Utp23
Zfp160
Fscn1
Pole2
Rab5b
Morc3
Zzz3
Stxbp4
Cox11
Mapk1ip1l
Nudt2
Kif24
Nsrp1
Ctbs
Dpy19l4
Eci1
Zfp655
Rrm2b
Dele1
Tmx1
Commd8
Trap1
Ube2l3
Cdk11b
Actr6
Fam161b
Coq6
Suz12
Coa7
Usp37
Cnot9
Rbbp6
Fam43a
Depdc7
Tmem131
Mfsd8
Tbx3
Cyc1
Laptm4a
Aars2
Septin11
Arl6
Fbxo5
Ipo11
Atp5g3
Eif1
Rpl37a
Rcc1
Rbm12
Cpne1
Chrac1
Ppie
Fkbp3
Mbtd1
Utp18
Tuba1a
Dhx37
Pfdn1
Dnajb4
Kbtbd7
Fubp1
Topbp1
Asxl2
Nras
Ttf1
Gtf2h2
Prpf4
Cdc26
Chd2
Mrps31
Pcx
Mtg1
Rps28
Ndufa7
Rpl14
Hdhd5
2510002D24Rik
Xpo1
Eif4b
Rraga
Atf7ip2
Mcoln1
Ccdc174
9130401M01Rik
Mrpl44
Hint1
Trip4
Manf
Bcl2l13
Diablo
Slc1a5
Rab3gap1
Hars2
Hars
Nyx
Dapk3
Zfhx3
R3hcc1
Vegfa
Fth1
Ywhaq
Rnft1
Efnb1
Nob1
Vps29
Rad9b
Tinf2
Bard1
Tob2
Itpr1
Alg1
Amotl2
Rplp1
Aspscr1
Rpl36al
Mgat2
Tor1aip2
Rpl21
Hibadh
Cul1
Aaas
Cenpt
Rnpc3
Parl
Srrt
Zc3h18
Pdcd11
Atp5md
Txndc9
Eif5b
Mcm9
Cse1l
Tcerg1
2410141K09Rik
BC024063
Cldn4
Becn1
Snrpa
Paip2b
BC024978
Nop2
Psma3
Trappc8
Ppp1r12a
Fem1b
Ndufc2
Zbtb44
Snx11
Scrib
Mphosph6
Smarcc1
Srpk1
2310009B15Rik
Timm44
Nek11
Aste1
Xrcc5
Pibf1
Dis3
Nufip1