ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520462 | F9
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◣ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Trim29
Trib3
Ilf2
Mill1
Adam5
Gtf2a1l
Mettl14
Rps29
Stk3
Dcpp1
H4c8
AU018091
Sumf1
Slc38a5
Gria3
Eif2s3y
Katna1
Fxyd1
Etv3l
Musk
Defb8
Cbx4
Il1b
Gpm6a
Asb2
Pomgnt2
Lilr4b
H2-M5
Inmt
Naaa
Ostn
Gpr141
Tas2r134
Gm51598
Snorc
Avpr1a
Tpcn2
Slc44a3
Shank1
Fanci
Alox12b
Kcnn2
Pcx
Ifna6
Dytn
Cxcl5
Wipf2
Iigp1
Coro6
Zp1
Igfbp2
Cnga1
Cdh26
Olfr125
Cyp2d9
Depdc1a
Cyp2f2
Gcm2
Agbl5
Cxxc4
Ly6l
Ltbp1
Foxp2
Pabpc5
Lrrtm4
Pde4a
Klri1
Scgb2b3
Selenbp1
Cmas
Pak3
Chic1
Nkx2-5
Rpl37rt
Gas1
Cyren
Herc6
Retnla
Enpep
Ndp
Trim34a
C130073F10Rik
Zfp710
Olfr1200
Oasl1
Tgtp1
Cyp3a16
Echdc2
Dclk3
Ctnna3
Gm45337
Scgb2b2
Ces2a
Vmn1r205
Prss47
Cngb3
Lamp5
Acsm2
Scn8a
Syngap1
Gnb5
Npm2
Knl1
Mboat1
Fuom
9930111J21Rik2
9930111J21Rik1
Rftn2
Fmc1
Cped1
Exosc2
Fuca2
Lmo3
Olfr813
Krtap6-1
Pate4
Dysf
Trarg1
Oxgr1
Crebzf
Cd163l1
Vgll4
Rffl
0610010F05Rik
Olfm5
Shox2
Ikzf4
Zswim8
Fbxo31
Sacm1l
Prss51
Zic4
Olfr222
Nt5c1b
Ces1f
Nxf2
Abcc3
Meikin
Paqr5
Fam71f1
Sspn
Proca1
Mlxipl
Samd14
Gfpt2
R3hdm2
Stau2
Ppp6r3
Brk1
Lsm6
Ccdc85b
Alx4
Hs1bp3
Slx4ip
Rfx3
Zfp846
Fam126a
Fabp6
Irak3
Prickle2
Ucn3
Serpinb12
Alox5ap
Casp14
Sgk3
Kcnip1
Olfr1337
Myo1e
Sstr2
Stbd1
Mpp7
Mynn
Cdx1
Slc2a9
Frmd4b
Tfrc
En2
Trhr2
Ttk
Scgb2b1
Scaper
H2-Eb2
Pcdhb9
Cd22
Fam50b
Cd200r4
Enpp4
Pros1
Paip1
Strip1
Fubp3
Mknk1
Tm7sf3
Dpp9
Alkbh7
Ghdc
Emp2
Sema3g
Abcb7
Rarb
Snupn
Tdpoz3
Zfp385a
Olfr1286
Fabp9
1700021F07Rik
2200002J24Rik
Usp17la
4931406B18Rik
Zdhhc18
Pxn
Gpr132
Porcn
Kdm5a
Epgn
Slc43a1
Rbks
Babam2
Cog6
Fam32a
Dcpp3
Spp1
Usp17lb
Gpm6b
Oxnad1
Dph3
Tmem191c
Cox7a1
Arf4
Hhip
Phc1
Tcp11
Rnase4
Ang
Homer3
Atp5e
Gtpbp4
Lpar5
St3gal3
Jsrp1
Mkrn1
Kif2b
Eapp
Adgra2
Asmt
Hivep3
Tomm5
Tex14
Plekhb1
H4c3
Mtf2
Cdk15
Slc15a1
H3c6
H3f3b
Rdm1
Slc6a16
Srsf7
Polr2a
H3c7
H2bc9
H4c4
H3c11
Ttpal
H4c18
H3c15
H3c14
Hspa5
Rhobtb1
H4c11
Dusp9
Ing1
Phf5a
Aco2
H3c2
H4f16
H4c9
H3c3
H2ac19
H2ac18
Gm20594
H3c13
H2bc18
H2bc21
H2ac21
H2ac20
H2bc4
H2ac6
H2ax
Ifitm7
Bmerb1
Icam1
H4c12
Hnrnpab
Bmt2
H2bc12
H2ac12
Ppdpf
H1f2
Dedd
H1f4
Fam53c
Arrdc2
Gm3448
Gm3417
Jund
Nabp1
Rsrp1
H3c10
Btg2
Mphosph9
2810006K23Rik
H4c17
Ubb
Hspa8
Taf4
H4c1
Calr
Tcte3
Gm3435
Zbtb37
Atp2a2
Tob1
Arid5a
Sdha
Ccdc127
Mymx
Taf13
Smarca5
9030025P20Rik
Gtf2a1
Ints6
H3c4
Acp6
Mylpf
Hrob
Poldip3
H4c2
Nek2
Sfi1
Hexim1
Rpl3
Letmd1
Slc9a1
Calm2
Guf1
Sde2
Nufip2
Junb
Fus
Utp14b
Acsl3
Sgk1
Mbd3
Dppa2
Hsp90aa1
H3c1
Srsf5
Insig1
Sntb2
Csrnp2
Spata33
Chmp1a
Haus1
Atp5a1
Ppp1r10
Mrps18b
Dnajb9
Uck1
Pbld2
H2bc22
H2ac22
Klf6
H2bc6
Hagh
Fahd1
Dgat2
Arl15
Ddit4
Calm1
H4c14
Rbm14
Gm21992
Gtf2b
Gpx1
Cltc
Sub1
Ctsl
Ier2
Znfx1
Ankrd28
Raf1
Atp1a1
Ndufs7
Ndufa6
Gpcpd1
Pnp
Aplp2
Gadd45a
H2ac4
Cited2
Actb
Jpt1
Eif4g2
Rnf19b
Tsc22d1
Atxn2
Rnaset2b
BC005537
Clu
Mat2a
Lman1
Tubb4b
Kmt5b
Rab8a
Ermard
Prdx1
H2bc11
H2ac11
Errfi1
Dhx32
Rnaset2a
Cox17
Srsf2
Mfsd11
Sf3b1
Dag1
Eif4a1
H1f3
Smc3
Mknk2
Mib2
H3c8
Pcna
P4ha1
Mcl1
H2-Bl
Arl4d
Wsb1
Hsp90ab1
Pyroxd1
Ubc
Srsf3
Lipe
Dhx8
Zfp36l1
Btg1
Wsb2
Amd2
Amd1
Hnrnpa2b1
Cbx3
Gtf2f1
Muc1
H2bc13
H2ac13
Mrpl37
Cyb5rl
Amacr
Ndufs8
Arl6ip1
Trp53inp1
H2bc1
H2ac1
Slc38a2
Ftl1
Vegfa
Ifrd1
Sephs2
Kctd5
H2ac10
H2bc8
H2ac8
Ier5
H2bc7
H2ac7
Clcn4
Spg11
Tuba4a
Dmxl1
H4bc24
H2bc23
H2ac24
H2ac23
Marchf3
Ddx5
Cep95
Slbp
Rita1
Cfl2
Gtf3c6
Dok4
Prdm14
Styxl1
Mdh2
Luzp1
Hjurp
A730008H23Rik
Zfand5
Zfp438
Cpt1a
Uspl1
Tnrc6c
Sqstm1
Rhob
Pabpc1
Ppp1r3c
Dusp1
Erdr1
Fos
Skp1
U2surp
Acly
Tob2
Klf7
Rcbtb1
Msh6
Vcl
Rnd3
Peli1
Slc25a39
H4c6
Dennd6a
Cep43
Slc25a3
Dhcr24
Rps12
Gapdh
Ep400
Msmo1
Fyco1
Dnaja1
Ptpmt1
Prmt8
Pigt
Eef1a1
Eif4e1b
Hnrnph1
H2bc15
H2ac15
Mafb
Abr
Ccnyl1
Slc9a3r1
Maml1
Rps3
Epha2
Glul
Wdr77
Atp5pb
Rps20
P4hb
Jun
Trmt2a
Ranbp1
Mrpl39
Plk2
Clic4
Ncl
Pdia3
Mbtps1
Catsper2
Snrpe
Mterf1b
Herc2
Dhx9
Gtf2a2
Denr
Traf7
Snx18
Sap18b
Sap18
Cebpa
H2bc14
Ctnnb1
Ppp1r2
Mterf1a
Sirt3
Psmd13
Cirbp
Uqcrc1
Sirt1
Ubap1
Pdcl3
Mpc1
Ttc41
Tra2b
Hsp90b1
Grcc10
Impdh2
Trpm3
Ipmk
Mad2l1bp
Idi1
Cpsf1
Itpr1
Fasn
Fam25c
Chd9
Tcta
Rhoa
Ankrd11
Hhex
Frmd6
Tti2
Tspan9
Mertk
Odc1
Exd1
Chp1
Vamp1
Ppp1r15a
Plekha4
Smg5
Pcmtd1
Eif4e
Usp37
Cnot9
Urgcp
Tsc22d2
Slc25a51
Ndel1
Slc25a30
Sesn2
Erf
Chchd1
Hmga1b
Hmga1
Napepld
Susd6
Map1lc3b
Gls
H2bc3
H2-Q8
H2-Q6
Klf10
Rps6
Paxip1
Creld1
Por
Txnip
Pdhx
Apip
Fdx1
Klhl21
Dusp5
Dnajb1
Mrpl1
Acer2
Caap1
Ncoa3
Iqgap3
Gpx4
Dnajb4
Chchd2
Nfkbia
Mrps28
Hspa1l
Hspa1a
Mylip
Ciao2b
Rsrc2
Kntc1
Cdkn2aip
Mllt6
Rnf103
Med23
Kdm4c
Socs3
Dgat1
Ccdc110
Acy3
Arhgap19
Man1a
Knop1
Iqck
Fth1
Chordc1
Atp1b2
Wdr82
Sertad2
Rnf125
Tagap1
Serinc3
Rps2
Cd81
Rusc2
Rpl7a
Med22
Txn1
Rpl23
Zfp119b
Slc31a1
Fkbp15
Srp19
Nudt4
Slc35d1
Eif3a
D230025D16Rik
Taf1d
4931406C07Rik
Whamm
Acp5
Rpl13
Slx1b
Amdhd2
Ern1
Adpgk
Unk
Taco1
Zswim3
Acot8
Actn4
Irs2
Hspa1b
Rcl1
Gadd45g
Degs1
Rplp0
Cebpd
Sertad1
Smyd4
Rpa1
Lrrc28
Mapkapk2
Mapk14
Ddx3x
Rps24
Rasl10b
Nrd1
Gclc
Rps27rt
Rab13
Atp5g3
Ncoa4
Glce
Cpm
H3f3a
Ccnt1
Sgf29
Mak16
Sbno2
Ppia
Nfe2l2
Eef2
Rpl9
Lias
Pcif1
Cyb5r4
Ulk2
Pdk1
Rps9
Rbbp6
Ints14
Baiap2
Wbp4
Shld2
Glud1
Elf1
Rbm39
Zfp119a
Vmn2r4
Tnnt1
Actg1
Nr6a1
Ptp4a1
Arrdc3
Nsrp1
Map2k4
Scnn1g
Zfp770
Dip2b
Rara
Cryzl2
Pik3r3
Mrpl44
Mapk1
Stard6
Pigl
Ncor1
Ankrd39
4930503L19Rik
Klf2
Rcn2
Npm1
Hmox2
Gadd45b
Palb2
Ndufaf3
Dctn5
Tuba1c
Rbm4b
Zfp959
Midn
Plec
Slc5a3
Mrps6
Commd1
Adk
Abcb8
Polr3e
Vps52
Rps18
Tmem39a
Naca
Bbs2
Trappc3
Sod1
Rpl17
Mdk
Ost4
Map2k2
Irf5
Ddx24
Ccar1
Zfp963
Slc16a10
Rtn3
Rab33b
Csrnp1
Nfe2l1
Slc20a1
Rpl8
Etfrf1
Casc1
Plk3
Mtg1
Jak1
Nfkbiz
Ddost
Ctdp1
Unc5b
Ggcx
Epc1
Eif1
Slc2a1
Nme1
Cxcr3
Tango2
Ksr1
Gm3667
Cfap20dc
Ttc7
Rnf38
Smurf2
Psmd3
Ppib
Med21
Taf4b
Preb
Snx29
Rnd1
Mob1b
Dnajc1
B2m
Paip2
Ssbp1
Id3
Hint1
Bsg
Gpat4
H2-Q9
H2-Q7
Pfn1
Gipc2
Rps3a1
Setd5
Rhou
Spry4
Edrf1
Cat
B4galt3
2410002F23Rik
Lgr4
Irf8
Pcf11
Atp5j
Kcnk5
Sgpl1
Tiparp
Pgrmc1
Net1
Fxr2
Herpud1
Top1
Cdk12
Bclaf1
Acer3
Lsm14a
Ubr3
Rpl15
Nkiras1
Usp53
Rapgef6
Psme4
Phf11d
Ctbs
Stra8
Snrpg
Sugt1
Ptma
Fbxo8
Cep44
Atp5b
Ywhag
Fam43a
Acad12
Trip4
Hs3st3b1
Mtr
Kbtbd7
Esyt2
Dpy19l4
Ell2
Ndufa2
Ik
Wdr25
Wars
H2aw
Rpl41
Plpp1
Pikfyve
Idh1
Tgoln2
Tgoln1
Nop58
Flnb
Oga
Dars
Atg4d
Nt5dc3
Rpl10a
Alg1
Rab5b
Ints8
Crot
Ptpa
Crat
Rnf149
Manf
H2az1
Rab43
Kansl2
G3bp1
Nfyb
Mtfr1
Gabbr1
Becn1
Sec22b
Selenok
Irak2
Dynll1
Tab1
Fra10ac1
Ddit3
Sfpq
Endog
Bcl2l1
Ahcy
Crybg2
Ulk1
Arc
Sorbs1
Gpi1
Sp1
Tpi1
Lrrc8a
Polg
Rps28
Ndufa7
Pih1d1
Dennd10
Aldh16a1
Eprs
Cebpb
Zfp930
Rbp4
Neu1
Atl2
Tpcn1
Rhot1
Rack1
Mrpl45
Iqcd
Slc18a1
Atp6v1b2
Id2
Rbpj
Drg2
Stat2
H2-K1
Ddx20
Atp6v0a1
Mpv17l2
Gorasp2
Hspb8
Cnbp
Trf
Usp42
Nr3c2