ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10003070 | Trophoblast stem cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◣ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

RBL2
RNF43
NIPSNAP1
TMEM52B
ATP2B1
RABGGTB
CCDC141
ANKRD23
TRPM6
ITGAM
SLC10A6
ANKRD1
SLC7A6
HSD17B4
SH3BP4
RHOH
DLG2
LHX8
OLFML1
PKIB
LGR5
COLEC12
KRTAP3-1
PRKCZ
ZNF343
TMEM245
CRPPA
TTLL7
MPP4
ENTPD1
DLC1
BABAM1
SH2D4A
NPL
CCR5
PIP4P2
FGFRL1
PLAAT5
ZNF749
FGD3
ITGB6
RASSF2
SH3YL1
CLCN4
SCNN1A
EID2
EXPH5
C6orf163
PLD5
MIS12
DERL2
IGFL4
SHROOM3
SLC7A7
GALNT11
ZNF641
BIN1
NR4A1
INSL4
PPFIBP2
NRBP1
LSM14A
TNIP3
ORAI3
IQGAP2
STS
TACC2
TTLL4
SIX2
PPARG
WBP1L
PCCB
KRT8
NANOGNB
POU5F1
SLC25A34
CCNL1
SLC25A26
FERMT1
SMARCA2
FREM2
SLC4A8
GALNT6
CTNNAL1
ABCB8
FUT3
TNFAIP8
HSD17B1
SLC45A4
DNMT3A
TMPRSS11F
PGC
HOATZ
BTG4
DENND6A
GSTO1
SNX27
CLTC
HDAC5
SUPT7L
SLC4A1AP
P2RX6
BRD4
EPS8
LNX1
ERP27
DAW1
SLC39A1
SLC7A9
VNN2
RFLNA
PTPRD
MID1
ANXA3
GABRR3
UIMC1
RFWD3
MAGI1
SEH1L
TREML1
KIFC3
DEPP1
LHX4
PPEF1
CHRNB1
CSGALNACT1
S100A16
EDNRB
GNA12
MPO
SGK1
RIOX1
AMOT
C11orf94
RPIA
ANK3
MICB
MTRNR2L8
CLPB
KDM5C
ARHGAP45
PARP4
BCAR3
BATF
CWF19L1
TBL1XR1
TMCO6
TNS1
CCDC88C
MAN1A1
SPINK4
SMC3
PPP2R3A
GRAMD1B
SULT1A4
SULT1A3
BAIAP2
SLC12A6
FAM110A
APBB1IP
ALDH4A1
ALDH3B2
PINK1
NEU1
PDCD1LG2
DACT2
EHBP1
CALHM4
LRRC14B
FAM107B
BMP4
ZBED9
MAB21L4
VGLL1
GOLGA8B
PIK3C2A
DPP4
CDC14B
YEATS2
TRIM22
SPR
ALPK3
UBE2V1
STAU1
TLK1
MORC4
ADGRF4
ADIPOR1
NHSL1
HK1
SDCBP2
PICALM
KRT23
SPECC1L
DNAJB2
PRDX3
CRY1
RPN2
MROH8
CLOCK
GRHL3
SYTL5
TMEM9
SLC6A4
PES1
LOC112694756
CRISP1
CTDSP1
ITGB3
NEURL3
TRIM16L
GPRC5C
SLC29A1
RPF1
LPP
ABLIM1
MME
DNMBP
ZNF451
TNFAIP3
NRK
ANXA6
NAA38
CYB5D1
LGALS8
KMT5C
LACTBL1
ZMYND11
NSFL1C
PLS1
FMN1
SLC13A3
HNF4G
TNKS2
ADGRG1
NEBL
DUSP9
RAB30
C9orf131
KYAT1
PRSS8
KRAS
HSPB7
TNRC6A
WDR87
SIPA1L3
TGM2
CYS1
RANBP2
GNAI1
EPHA4
LNP1
AP5B1
RHBDD2
SASH1
LATS1
TMEM267
WEE1
KIAA1586
NAPEPLD
SKIL
ACSL1
HMCN1
IL31RA
LSR
CRYGC
IGFL2
ZFHX3
RNF144B
BRD3
LIMA1
DUSP3
TNFRSF19
SLC6A9
SLC16A7
ZFPM1
VIM
GJA5
MYBL2
FAAP20
MTUS1
CLCC1
YAP1
HK2
PNKD
H2AC15
TFDP2
YJU2
TMIGD2
POLR1H
SCAMP4
ADAT3
RAPGEF6
EPB41L1
PIK3C2G
PTK2
CST6
BEST3
YIPF6
WDR74
CD59
GMEB1
DACT3
ARHGEF18
PPP1R9A
MPP1
RILPL1
SPAG17
RNPEP
TIGD2
THAP1
ACOT2
SYCE2
PEX3
ADAT2
HTRA4
P2RY6
VOPP1
SFTPD
SEPSECS
EHMT2
C2
ARHGDIB
TMEM68
TGS1
RNF19A
ISM2
SLC41A3
CD63
TENM3
GPR146
ING2
ZNF335
TRIM34
MKRN2OS
LOC644090
YTHDF2
RAD50
CRISPLD2
ROPN1B
TTI2
AMOTL2
LRFN4
MEF2A
ACTR1B
HAT1
DAPK1
NBN
LMO7
TBC1D15
SUN1
SRP68
BTRC
MYL6B
MEF2D
CSF1R
GPRC5A
HSPA9
VTCN1
CFAP45
SIGIRR
FAM162B
CCDC68
FBXW12
DYSF
DUS3L
QRICH1
RIOK2
RASGRF1
SMPDL3B
UTP3
LARS2
DDB2
PPP6R2
OVOL1
JPT1
TLE3
ZZZ3
NDUFB6
CBFA2T3
GSTA3
AHCYL2
LSMEM1
ZNF444
TRIM45
ART5
CMC2
CNN3
MAD2L1BP
GTPBP2
COL4A6
COL4A5
NCOA1
PTN
PALM3
PDCL
DOT1L
AGAP3
FBXO32
WWOX
CCNG2
TUBGCP5
ELF5
CDK12
FOCAD
SLC44A2
GAR1
GLIS2
ZNF155
TRIM38
STX3
STARD13
CAPN8
BZW2
TGIF1
VIT
MTRNR2L2
ZNF552
CHD3
ARHGEF3
EDEM2
POLB
BAG3
TBC1D22A
TMCC1
TRIML2
TMPRSS13
SYNPO
MGST3
CEP85
TGM1
TNFSF12-TNFSF13
TNFSF12
MREG
FTH1
RAD9A
SDCBP
BRCA1
C16orf72
NDUFA4
ITGBL1
APOC1
BMPR1A
ADAMTS6
RPL6
PTPN11
LRRC75A
RUVBL1
CNOT2
KLF7
TXNRD1
NMI
ELMOD2
ARHGAP27
OARD1
NFYA
BRI3
CCDC130
SMIM30
ARHGAP19
SIRT4
H2BC5
RGPD2
RGPD1
PFDN4
POLG2
NPAS4
RGS22
C12orf57
SRI
BCAS3
TRIM37
H3C15
H3C14
H2AC19
H2AC18
PSMD6
SCRIB
APPBP2
SLC7A2
H2BC4
H2AC6
H1-2
NRAS
STX16
H2BC11
H2AC11
H2BC21
H2AC21
H2AC20
H4C8
NCOA3
C1QTNF6
CCDC59
SMIM6
CS
ZNF76
DUSP21
THOC6
HCFC1R1
SETD5
MTRNR2L9
PPM1D
GREB1
FOXJ3
HERC4
SMARCD2
FBL
ULK2
RNFT1
USP32
TUBD1
RPS6KB1
NKIRAS1
ZC3H10
VPS26C
H2AX
TPD52L2
KRT71
ARID4A
CDS1
ZMYND8
BRIP1
HEXIM1
ZBTB4
POLR2A
NFX1
MAZ
EIF2D
HTR5A
H4C5
DHX40
ZNF331
IFT43
ADAP1
TRMT12
USP36
H2AC16
H1-5
MYO18A
H3C13
H2BC18
C1QBP
MBOAT2
ARFGEF2
LAPTM4B
SLC4A7
PLAGL1
KLF6
SPTSSB
SLC25A24
PRUNE1
MINDY1
FLOT1
MPND
H2BC12
H2AC12
TEX14
RAD51C
IL22RA2
ATP1A1
ZNF337
TRIP4
OR2B11
JUN
FKBP4
POLD1
PAPOLA
PPP6R3
GSTA4
PLXNB2
H4C15
H4C14
TMPPE
POLR2J3
GLB1
POLDIP3
PIK3R3
RHOB
AKAP1
RTEL1
H3C7
FAM83A
SPHK1
USP11
FUT8
SNAPC5
CBWD5
CBWD3
TFF1
ISG20
ARNT
SRSF5
KMT2E
YWHAZ
TNFAIP1
IFT20
FAM53C
CDC25C
MYLK3
ZNF217
INTS2
RTN2
MTR
SEPTIN9
USP42
UCKL1
LDAH
PARP2
MAN2C1
TIPARP
SRSF7
NAA60
H1-3
ARL6IP1
PPP5D1
CALM3
FBXL18
EIF3D
ARAP1
P2RX7
EIF1
SPATC1L
IMPDH2
PTP4A1
U2SURP
PRORP
PPP2R3C
PDGFB
LAPTM4A
DCLRE1B
CALM2
AP4B1
RAD23A
NXF1
BCAS2
ARNTL
CYB561
FAM227B
DTWD1
ZC3H6
CUL7
MACC1
XKR7
POR
PFKFB3
C3orf14
TTLL3
CBWD6
AXL
SLFN12
PARD6B
CYB5R4
CSDE1
TMEM211
RBBP5
IRF9
BLCAP
NANP
MRPS23
LYRM1
MRPS28
SCAMP3
RXRA
LEKR1
HNRNPH1
HIPK1
H4C11
CSKMT
C11orf98
PLEKHG2
ATP5F1E
ARIH1
PRKRIP1
CALM1
TDRKH
CHMP4A
ADNP
H2BC15
RP1
KRT13
OSGIN2
NR1D2
CPLX2
RBBP8NL
WT1
RBM48
PEX1
TLN1
CREB3
DENND2C
AKAP8
RPLP0
PCYT2
AKR1E2
PDXDC1
AMD1
MTARC1
LATS2
TUFT1
RBM45
BCAS1
NOL11
MYL6
IQSEC3
GTF2H4
DDX41
SRCAP
LOC730183
ZNF799
PRSS22
CCDC183
ANKRD36C
RIMKLB
PSMC5
GRHL2
FTSJ3
H4-16
FUS
TRIB1
P4HB
PA2G4
CKB
EBAG9
OSBPL2
MAPK6
VPS45
TRIQK
METTL2A
RFESD
FAM220A
GTF2IRD2B
UTP18
SF3B4
MBTD1
HSF1
BOP1
FSCN1
CYSLTR2
KIAA0319
ENTPD5
DTD2
BBOF1
TOMM40
STK11IP
ERCC6L2
C11orf95
TACO1
TPM1
DHPS
ASAP1
MRPS24
GLDN
DDX59
CYP3A43
USP2
DGKD
CCNI2
LMBRD1
FBP1
AP2A1
AFAP1
STRADA
SLC49A4
HSPBAP1
CEP78
ZER1
ZCWPW1
MEPCE
GAS2L3
ATG9B
WDR83
TBX2
SMG8
MAN2B1
C1QTNF9
UBXN4
MEMO1
FER
PPP4R3A
MRPL21
IGHMBP2
EDC4
DDX42
CCDC47
UNKL
TBC1D24
CRYBA2
FGD4
CAMK2D
TMPRSS4
RASGRP2
MICOS10-NBL1
MICOS10
DCTN1
SPATA2
GET4
FAM169A
SKA2
PRR11
NDUFS3
LAMP1
KBTBD4
ZNF221
MIEF2
IMPA1
FLII
PRRC2B
PODXL
CASP9
AMZ2
TTC6
SSR3
RCCD1
FOXA1
FBXO5
EPCAM
CREM
C16orf95
ABCA5
PHC3
CLN3
ADPRHL1
ERVW-1
CTH
DSTYK
CDH18
TCAF2
TBL1X
RESF1
MMP15
DGAT1
CYB561D1
CLCN3
SMPDL3A
SH2B2
RNF13
PSME1
LLGL2
NMT1
DCAKD
ARHGEF2
ZNF566
ZNF292
SLC37A4
SLC35E2A
CD68
ANP32E
AGXT
ZNF263
RAB9B
NPPB
KLHL30
ETV6
DDX52
TFRC
SLC35C2
FCSK
TAGLN2
PSMG1
WSB1
CYP51A1
CGB2
KDM4C
EHMT1
ZNF845
WWC2
RNF223
RAE1
PNMA1
L1CAM
CSF2RB
ZNF114
TBX3
SULT6B1
PHLDA1
INO80
CEBPZOS
ATG14
ZNF777
SPECC1
DHDDS
ALAD
PPIA
NR2F2
SSTR5
PCGF6
L3HYPDH
JKAMP
FURIN
ESYT3
DAB2
CLUAP1
AXDND1
R3HCC1L
KRTAP2-2
EML5
ADPGK
PAIP2
MAP11
DSTN
DPP8
BFSP1
ZNF318
RAPGEF2
POLR3B
HOPX
GMFB
CSTF1
COIL
AURKA
ABCA3
MRPS18C
MICU2
HELQ
CAMLG
TPRA1
SPTBN4
PTPN1
PRR19
PPP1R12C
PAFAH1B3
BLVRB
PRIM2
CIB3
CDKL1
UFD1
TRIM33
TMEM154
GPR1
CDC45
SLC25A51
HMGA1
DEAF1
SLC44A1
ATF6
SOWAHB
RNF44
FAM161B
CUL9
COQ6
CCDC138
C6orf226
C4BPB
VTN
SUPV3L1
RGL1
RELT
RBM19
NUCB2
IAH1
EXOSC6
ROPN1
KIF3A
CDC42SE1
VEZF1
NT5C2
NSG2
MXD3
TMEM18
SEMA5B
PLLP
THAP5
SOS2
NOCT
DNAJB9
CCNP
PYROXD2
MRTFA
GXYLT1
CNOT8
SOCS2
SLC25A36
RHOBTB2
PLEC
FZR1
C1orf105
ADCK1
ZNF587B
TMEM31
MRPL58
KLF5
FBRS
DNPEP
TMC4
STX7
STAT6
STAT1
SEC22B
RPS6KA4
MFSD10
MED28
IVNS1ABP
ZNF433
WDR4
RPS27
RNF114
PITRM1
LSM10
HSH2D