ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: MSX2 | STRING
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◣ MSX2: STRING

BMP4
SP7
FOXN1
PPARG
RBL2
WDR74
MTRNR2L8
RNF43
NIPSNAP1
HSD17B4
MTRNR2L2
SIRT4
CCDC141
TMEM52B
ITGAM
SIX2
ANKRD23
CRPPA
RABGGTB
KRTAP3-1
MIS12
DERL2
SLC10A6
ENTPD1
ATP2B1
COLEC12
PKIB
ANKRD1
SLC7A6
LNX1
SH3BP4
DLG2
OLFML1
PRKCZ
SH3YL1
SLC45A4
EID2
SLC7A7
FGD3
SH2D4A
TRPM6
ZNF749
TMEM245
CCR5
ZNF343
LSM14A
CLTC
NR4A1
WBP1L
BABAM1
CLCN4
POU5F1
H2BC5
PLAAT5
ZNF641
C6orf163
INSL4
ERP27
SLC7A9
P2RX6
RGPD2
RGPD1
LHX8
CCNL1
GABRR3
ADGRF4
PFDN4
POLG2
IQGAP2
BIN1
STS
NPAS4
TTLL7
LSMEM1
FAM110A
ITGB6
RASSF2
FREM2
SNX27
RGS22
TACC2
ABCB8
C12orf57
CTNNAL1
SRI
KDM5C
SLC25A34
PIP4P2
KRT8
MPP4
LGR5
UIMC1
FUT3
DEPP1
BCAS3
HOATZ
BTG4
PLD5
LHX4
SUPT7L
SLC4A1AP
GALNT11
ORAI3
ANXA3
NANOGNB
SCNN1A
TRIM37
RHOH
H3C15
H3C14
H2AC19
H2AC18
PSMD6
HSD17B1
IGFL4
SCRIB
CLPB
BRD4
APPBP2
DAW1
SLC7A2
NPL
H2BC4
H2AC6
SLC25A26
GRHL3
H1-2
SEH1L
NRAS
TNFAIP8
SMARCA2
STX16
H2BC11
H2AC11
ACOT2
TRIM22
CDC14B
H2BC21
H2AC21
H2AC20
H4C8
TTLL4
MAGI1
DLC1
FERMT1
NRBP1
AMOTL2
EXPH5
TNIP3
LRRC14B
WWOX
FMN1
ZFPM1
RFLNA
DNMT3A
CSGALNACT1
SLC4A8
GALNT6
NCOA3
SYCE2
DNAJB2
APBB1IP
PCCB
PIK3C2A
MTUS1
ARHGAP45
SHROOM3
C1QTNF6
KIFC3
ALDH3B2
NCOA1
ADGRG1
CCDC59
FGFRL1
PTPRD
TLK1
SMIM6
DOT1L
KMT5C
PICALM
CS
SULT1A4
SULT1A3
POLR1H
ZNF76
SPR
LACTBL1
EHBP1
CALHM4
DUSP21
SCAMP4
ADAT3
THOC6
HCFC1R1
DENND6A
SETD5
MID1
MTRNR2L9
MEF2A
PPM1D
ZNF444
GREB1
TNFAIP3
CCDC88C
TRIM45
LIMA1
SLC39A1
MICB
NBN
FOXJ3
C9orf131
C11orf94
PARP4
HERC4
SMARCD2
FBL
NRK
ULK2
TLE3
RNFT1
BAIAP2
ALDH4A1
USP32
TUBD1
RPS6KB1
NKIRAS1
PPFIBP2
ZC3H10
TREML1
CSF1R
TMPRSS11F
RNF19A
NEURL3
HDAC5
EPS8
VPS26C
YJU2
MORC4
H2AX
TMCO6
EHMT2
C2
EDNRB
PDCD1LG2
ZMYND11
HSPB7
TENM3
PPP2R3A
RIOX1
PEX3
OARD1
NFYA
ADAT2
TPD52L2
KRT71
ARID4A
ANXA6
CDS1
KIAA1586
TNRC6A
ZMYND8
GOLGA8B
FAM107B
BRIP1
SLC12A6
S100A16
H2AC15
HEXIM1
ZNF552
TRIM16L
PIK3C2G
IGFL2
AGAP3
ZBTB4
POLR2A
NFX1
BATF
AP5B1
NEBL
SASH1
MAZ
PGC
EIF2D
GRAMD1B
SYTL5
HTR5A
H4C5
ING2
LATS1
SEPSECS
GSTO1
DHX40
CYS1
ZNF331
IFT43
TFDP2
ADAP1
TRMT12
PRDX3
MPO
PPEF1
KLF7
USP36
VNN2
SPECC1L
NAPEPLD
NSFL1C
ISM2
H2AC16
H1-5
ZNF335
MYO18A
H3C13
H2BC18
SPINK4
RPF1
C1QBP
MBOAT2
ARFGEF2
SLC6A4
LAPTM4B
SLC4A7
ADIPOR1
RFWD3
PLAGL1
MKRN2OS
KLF6
SPTSSB
WDR87
SIPA1L3
SLC25A24
PRUNE1
MINDY1
MAN1A1
FLOT1
ARHGDIB
ZBED9
TIGD2
RANBP2
NHSL1
KYAT1
MPND
HK1
SGK1
H2BC12
H2AC12
TEX14
RAD51C
PLS1
IL22RA2
CRISP1
BEST3
CWF19L1
ATP1A1
ZNF337
TRIP4
SMC3
OR2B11
JUN
ZNF451
MEF2D
FKBP4
POLD1
PAPOLA
ALPK3
PPP6R3
PPP1R9A
CRY1
GSTA4
UBE2V1
HTRA4
PLXNB2
H4C15
H4C14
CHD3
LMO7
TMPPE
POLR2J3
MAB21L4
GLB1
CEP85
POLDIP3
PIK3R3
LOC112694756
CD59
BCAR3
PINK1
DACT2
RHOB
NDUFA4
AKAP1
RTEL1
H3C7
FAM83A
TXNRD1
SPHK1
USP11
GPRC5A
FUT8
TNS1
TMEM9
HMCN1
SNAPC5
MPP1
GNAI1
CBWD5
CBWD3
TFF1
ARHGEF3
PTN
ISG20
DUSP3
ARNT
SRSF5
PNKD
KMT2E
YEATS2
YWHAZ
TNFAIP1
IFT20
HSPA9
EPHA4
RAPGEF6
PES1
FAM53C
CDC25C
MYLK3
ZNF217
SDCBP2
INTS2
IL31RA
FOCAD
ZFHX3
RTN2
RPIA
RIOK2
MTR
SEPTIN9
PALM3
USP42
UCKL1
LDAH
GMEB1
EPB41L1
PARP2
MAN2C1
TIPARP
SRSF7
P2RY6
NAA60
SLC44A2
H1-3
ARL6IP1
PPP5D1
CALM3
VIM
RILPL1
FBXL18
EIF3D
ARAP1
P2RX7
PTK2
EIF1
CCNG2
ROPN1B
RPN2
NEU1
MROH8
TMEM68
TGS1
SPATC1L
TRIM34
SLC13A3
IMPDH2
PTP4A1
GJA5
U2SURP
MYBL2
LNP1
TBC1D15
PRORP
PPP2R3C
PDGFB
CLOCK
LAPTM4A
DUSP9
DCLRE1B
CALM2
AP4B1
THAP1
RAD23A
LOC644090
NXF1
LPP
ACSL1
YTHDF2
TGM2
BCAS2
TBC1D22A
LARS2
PRSS8
ARNTL
SUN1
CYB561
FAM227B
DTWD1
ZC3H6
VTCN1
CUL7
SRP68
MACC1
DDB2
XKR7
SPAG17
RNF144B
CLCC1
TMIGD2
POR
PFKFB3
NAA38
LSR
GPRC5C
CYB5D1
CTDSP1
C3orf14
TTLL3
SLC29A1
CBWD6
AXL
SLFN12
PARD6B
HNF4G
EDEM2
CYB5R4
CSDE1
TMEM211
RBBP5
IRF9
BLCAP
NANP
MRPS23
LYRM1
MRPS28
ART5
TNKS2
SCAMP3
ABLIM1
RXRA
LEKR1
HNRNPH1
HIPK1
GSTA3
RASGRF1
H4C11
CSKMT
C11orf98
PLEKHG2
ATP5F1E
ARIH1
PRKRIP1
FBXW12
CALM1
TNFRSF19
TDRKH
FBXO32
CHMP4A
BMPR1A
ADNP
TMEM267
RAD9A
RAB30
H2BC15
GPR146
RP1
KRT13
RNPEP
OSGIN2
ACTR1B
BRI3
ZZZ3
TGM1
NR1D2
NMI
NDUFB6
LGALS8
CPLX2
ZNF155
RBBP8NL
WT1
RBM48
PEX1
TRIML2
TLN1
RAD50
CREB3
GAR1
DENND2C
AKAP8
RPLP0
PCYT2
ELMOD2
DACT3
AKR1E2
PDXDC1
CRISPLD2
AMD1
MTARC1
LATS2
CAPN8
TUFT1
STARD13
RBM45
BCAS1
NOL11
MYL6
IQSEC3
GTF2H4
CRYGC
DDX41
TGIF1
SRCAP
LOC730183
ZNF799
TNFSF12-TNFSF13
TNFSF12
PRSS22
CCDC183
ANKRD36C
RIMKLB
PSMC5
GRHL2
FTSJ3
MGST3
H4-16
FUS
TRIB1
P4HB
CFAP45
MREG
PA2G4
CKB
BRD3
TMPRSS13
EBAG9
SMPDL3B
OSBPL2
MAPK6
VPS45
TRIQK
METTL2A
RFESD
FAM220A
CNN3
RPL6
PTPN11
PDCL
GTF2IRD2B
UTP18
SF3B4
MBTD1
SLC41A3
HSF1
BOP1
FSCN1
CYSLTR2
LRRC75A
KIAA0319
ENTPD5
DTD2
BBOF1
TOMM40
STK11IP
ERCC6L2
YIPF6
C11orf95
TACO1
TPM1
DHPS
ASAP1
MRPS24
GLDN
DDX59
CYP3A43
CHRNB1
BTRC
USP2
MYL6B
DGKD
CCNI2
SIGIRR
LMBRD1
GNA12
FBP1
AP2A1
AFAP1
FAM162B
STRADA
SLC49A4
HSPBAP1
DYSF
CEP78
ZER1
ZCWPW1
MEPCE
GAS2L3
ATG9B
WDR83
TBX2
SMG8
MAN2B1
C1QTNF9
AMOT
UBXN4
MEMO1
FER
ANK3
PPP6R2
PPP4R3A
MRPL21
IGHMBP2
EDC4
DDX42
CCDC47
UNKL
TBC1D24
CRYBA2
POLB
FGD4
CAMK2D
TMPRSS4
RASGRP2
MICOS10-NBL1
MICOS10
DCTN1
BZW2
SPATA2
GET4
FAM169A
TBL1XR1
SKA2
PRR11
NDUFS3
LAMP1
KBTBD4
ZNF221
MIEF2
IMPA1
FLII
PRRC2B
PODXL
CASP9
AMZ2
TTC6
SSR3
RCCD1
FOXA1
FBXO5
EPCAM
DUS3L
CREM
C16orf95
ABCA5
PHC3
CLN3
ADPRHL1
ERVW-1
CTH
DSTYK
CDH18
TCAF2
TBL1X
RESF1
MMP15
DGAT1
CYB561D1
CLCN3
SMPDL3A
SH2B2
RNF13
PSME1
LLGL2
ARHGAP27
NMT1
DCAKD
ARHGEF2
ZNF566
ZNF292
SLC37A4
SLC35E2A
RUVBL1
CD68
ANP32E
AGXT
ZNF263
RAB9B
NPPB
KLHL30
ETV6
DDX52
TFRC
SLC35C2
FCSK
TAGLN2
VGLL1
PSMG1
WSB1
CYP51A1
CGB2
KDM4C
EHMT1
DPP4
CCDC130
ZNF845
WWC2
RNF223
RAE1
PNMA1
L1CAM
CSF2RB
ZNF114
TBX3
SULT6B1
PHLDA1
INO80
CEBPZOS
ATG14
ZNF777
STAU1
SPECC1
DHDDS
ALAD
PPIA
NR2F2
SSTR5
PCGF6
L3HYPDH
JKAMP
FURIN
ESYT3
DAB2
CLUAP1
AXDND1
R3HCC1L
KRTAP2-2
KRT23
EML5
ADPGK
PAIP2
MAP11
DSTN
DPP8
BFSP1
ZNF318
RAPGEF2
POLR3B
HOPX
GMFB
CSTF1
COIL
AURKA
ABCA3
MRPS18C
MICU2
HELQ
CAMLG
TPRA1
SPTBN4
PTPN1
PRR19
PPP1R12C
PAFAH1B3
BRCA1
BLVRB
PRIM2
CIB3
CDKL1
UFD1
TRIM33
TMEM154
GPR1
CDC45
SLC25A51
HMGA1
ITGB3
DEAF1
SLC44A1
ATF6
SOWAHB
RNF44
MME
FAM161B
DNMBP
CUL9
COQ6
CCDC138
C6orf226
C4BPB
VTN
SUPV3L1
RGL1
RELT
RBM19
NUCB2
IAH1
EXOSC6
ROPN1
KIF3A
CDC42SE1
VEZF1
NT5C2
NSG2
MXD3
TMEM18
SEMA5B
PLLP
THAP5
SOS2
NOCT
DNAJB9
CCNP
PYROXD2
MRTFA
GXYLT1
CNOT8
SOCS2
SLC25A36
RHOBTB2
PLEC
KRAS
FZR1
C1orf105
ADCK1
ZNF587B
TMEM31
MRPL58
KLF5
FBRS
DNPEP
TMC4
STX7
STAT6
STAT1
SEC22B
RPS6KA4
MFSD10
MED28
IVNS1ABP
ZNF433
WDR4
RPS27
RNF114
RHBDD2
PITRM1
LSM10
HSH2D
CGB5
CD8A
WEE1
TOM1
TEX22
RPL12
RANBP3
PPFIA4
LRSAM1
IPMK
EVI5
CSNK1E
TMBIM6
NRBF2
MPV17
SGK3
ICA1L
FIS1
DHX30
COQ2
ZBTB10
TKFC
TADA3
SKIL
NR1H3
HEXA
DENND2A
DDB1
CSRNP2
ARPC4-TTLL3
ARPC4
SLC16A6
QPRT
PARD6A
LAMC1
ARSG
ACOT1
ACD
ZNF33A
VPS35
USP8
TMEM144
RTF2
PSMB10
POLR2J