ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478469 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◣ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
SIRT4
SIX2
SLC7A2
NPAS4
RBL2
POLG2
H2BC5
SRI
ADGRF4
C12orf57
H3C15
H3C14
H2AC19
H2AC18
PFDN4
RGS22
C1QTNF6
SCRIB
SLC4A7
H2BC4
H2AC6
PLAGL1
FLOT1
SETD5
SMIM6
ZNF337
ZC3H10
GSTA4
PSMD6
NRAS
SLC45A4
TRIM37
STX16
NCOA3
PARP2
BCAS3
H1-3
GREB1
FOXJ3
ARID4A
H2BC11
H2AC11
THOC6
HCFC1R1
ZNF331
ARNTL
MACC1
SMARCD2
H1-2
HEXIM1
PLEKHG2
PPP6R3
APPBP2
RNFT1
RP1
YWHAZ
KMT2E
RBBP8NL
H2AC16
H1-5
ZMYND8
AKR1E2
CLTC
H2BC21
H2AC21
H2AC20
OARD1
NFYA
UCKL1
HTR5A
LAPTM4B
GRHL2
SPTSSB
NFX1
TRIB1
P4HB
PPM1D
USP32
LSMEM1
ZNF76
TRIQK
H4C8
CCDC59
RFESD
POLR1H
MPND
FBXL18
KIAA0319
BRIP1
VPS26C
POLD1
POLDIP3
CYP3A43
TPD52L2
SRSF5
KRTAP3-1
ERP27
TUBD1
RPS6KB1
CBWD5
CBWD3
TFF1
CUL7
SNAPC5
USP42
RAD23A
C1QTNF9
USP36
PPP4R3A
FREM2
TRMT12
TMPRSS4
MICOS10-NBL1
MICOS10
EIF2D
MAZ
PFKFB3
SPATA2
ZBTB4
POLR2A
ALDH3B2
CDS1
XKR7
SKA2
PRR11
TIPARP
NAA60
SLC25A24
ARNT
CASP9
ARAP1
TTC6
FOXA1
CREM
PIK3R3
DHX40
RTEL1
TBL1X
DGAT1
ZNF217
LYRM1
MRPS28
SLC37A4
CD68
ANP32E
MIS12
DERL2
H2AC15
SEPTIN9
H2BC15
BCAS1
C3orf14
ZC3H6
TFRC
NXF1
TAGLN2
WSB1
SRSF7
RNF223
PNMA1
PHLDA1
ATG14
ACOT2
CS
PPIA
ISG20
SSTR5
ESYT3
DSTN
BFSP1
H3C13
H2BC18
H4C15
H4C14
DCLRE1B
AP4B1
HOPX
CSTF1
AURKA
PIK3C2G
PAPOLA
IQSEC3
CALM2
POR
CIB3
LNX1
RBM48
PEX1
SLC25A51
H4C5
CYB5R4
INTS2
CSKMT
C11orf98
FAM161B
CUL9
COQ6
CCDC138
SYCE2
ARL6IP1
CYB561
RELT
PPP5D1
CALM3
CDC42SE1
H3C7
SEMA5B
PRUNE1
MINDY1
CNOT8
RHOBTB2
LSM14A
TLE3
FAM53C
CDC25C
TDRKH
DNPEP
CBWD6
IRF9
STAT6
IVNS1ABP
LSM10
AKAP1
U2SURP
BCAS2
TMBIM6
CSRNP2
FAM227B
DTWD1
ARIH1
ZNF33A
RTF2
PSMB10
POLR2J
CHST15
CHMP4A
TMPRSS13
DDX59
SALL4
HES4
COX16
SRCAP
LOC730183
MGLL
LIMA1
PSMC5
FTSJ3
WNT1
LGMN
PRKRIP1
THTPA
THEM4
MYC
ZNF609
SPIRE2
HNRNPA2B1
DOLPP1
DLG2
P2RX7
HSF1
BOP1
ZFAND6
TMEM126B
PCK2
NRL
HSPB1
H2AX
TEX14
RAD51C
DBR1
ARFGEF2
ATP1A1
RNF224
GTF2H2C_2
GTF2H2
ZNF34
ST3GAL4
HEXIM2
TMTC2
MINDY4B
H2BC8
H2BC12
H2AC12
RPLP0
USP15
RBM3
NBN
IFT43
IMPDH2
LAPTM4A
ELK4
CHD4
CATSPER3
WWOX
ATP5F1E
DENND2C
SULT1A4
SULT1A3
ZNF425
ZNF398
CCNT1
ARSD
TUFT1
MTA3
KCNG3
EIF1
TSGA10
SECISBP2
PIP5KL1
PCGF5
C2orf15
TUBA1C
TLCD2
HBP1
TMEM126A
RPL13
COPS7A
B4GAT1
VPS45
TTLL6
PYGO2
LOC101928120
FAM131A
ABCB8
MRPS23
FUS
TNPO1
TFAP2C
SCFD1
DMXL1
CLBA1
MYL6
MYLIP
CEP63
BARHL1
ANAPC13
ATP2B1
FAM220A
SMG8
PLK2
CPPED1
CPLX2
KIF26A
ANKRD36
AARS2
TOMM40
SGF29
NADK
KLF10
HIPK1
DHPS
RAB11A
EIF2AK2
ARID1A
NIPSNAP1
MAN2C1
ANKRD36C
PMEPA1
CYRIB
RPL38
CHD1
RXRA
AKAP8
RPS20
RABGAP1
ELP5
CTDNEP1
CCNL1
H4C11
KPTN
EIF2AK3
HNRNPH1
TACO1
MRPL21
IGHMBP2
DDX5
SCAMP3
PA2G4
GTF2IRD2B
CHCHD5
RNF43
METTL2A
PDCD4
NDUFC2-KCTD14
NDUFC2
FZD1
FN3K
COMT
CCDC174
H4-16
ZCWPW1
MEPCE
ZNF3
TRIP4
SPATC1L
LMTK2
CSDE1
LEKR1
CYP51A1
GTF2H2C
UTP18
MBTD1
DSTYK
DAPK3
PPP2R5C
PTP4A1
TTLL3
PSMG1
YJU2
CASP7
NANP
GDPGP1
CIB1
RBBP5
STRADA
NDUFS3
KBTBD4
TCAF2
SLC50A1
POLR2J3
ZER1
RCCD1
ZNHIT2
ZNF225
RCOR1
PDE8A
PDCL3
NAT14
ID1
EBAG9
CYB561D1
NOTCH2NLC
MIS18BP1
GFOD1
FCF1
FAM214A
AREL1
EDC4
DDX42
CCDC47
GTF2H4
TBX2
AMOTL2
TPD52L1
PSMD12
EIF4B
AFF1
PHC3
ZC3H4
HOMER1
FAM43A
ACP3
PAIP2
USPL1
TEDC1
SREK1
NAT10
HSCB
HMGB1
GABPB2
CHEK2
KRT13
ZFP1
RNF32
RABIF
CHRM4
MTMR4
GFM1
EIF3E
MEMO1
C16orf95
MFSD14C
CLK3
TM9SF4
RUSF1
PKP2
CRELD1
EPS8
CLUAP1
ZKSCAN2
FANCI
ISY1-RAB43
ISY1
CRNKL1
CFAP61
NKIRAS1
NR1D2
NOL11
SVIL
LSMEM2
GBE1
SSBP1
SNX17
ITPR1
EIF2B4
ADAT1
ECI1
OSCAR
NDUFA3
MRPS7
IPO4
GGA3
GPRC5A
ZNF721
TDRD5
PIGG
DNAJC25-GNG10
DNAJC25
SRA1
BOD1L1
WDR4
EED
TRIM45
RPS29
MAPK6
SRP54
RNF103-CHMP3
RMND5A
RIPK4
ACYP2
CLPB
GPSM3
NOP16
HIGD2A
SEC22B
UNC13D
TNFAIP1
IFT20
STAT1
HEATR6
DIAPH1
USP2
L3HYPDH
JKAMP
ADPGK
RPP21
MROH1
YTHDF2
MAVS
EMC2
DUS2
DDX28
PDE7A
FBXO34
WDR61
MTRNR2L8
HSD17B4
MTRNR2L2
CCDC141
TMEM52B
ITGAM
ANKRD23
CRPPA
RABGGTB
SLC10A6
ENTPD1
COLEC12
PKIB
ANKRD1
SLC7A6
SH3BP4
OLFML1
PRKCZ
SH3YL1
EID2
SLC7A7
FGD3
SH2D4A
TRPM6
ZNF749
TMEM245
CCR5
ZNF343
NR4A1
WBP1L
BABAM1
CLCN4
POU5F1
PLAAT5
ZNF641
C6orf163
INSL4
SLC7A9
P2RX6
RGPD2
RGPD1
LHX8
GABRR3
IQGAP2
BIN1
STS
TTLL7
FAM110A
ITGB6
RASSF2
SNX27
TACC2
CTNNAL1
KDM5C
SLC25A34
PIP4P2
KRT8
MPP4
LGR5
UIMC1
FUT3
DEPP1
HOATZ
BTG4
PLD5
LHX4
SUPT7L
SLC4A1AP
GALNT11
ORAI3
ANXA3
NANOGNB
SCNN1A
RHOH
HSD17B1
IGFL4
BRD4
DAW1
NPL
SLC25A26
GRHL3
SEH1L
TNFAIP8
SMARCA2
TRIM22
CDC14B
TTLL4
MAGI1
DLC1
FERMT1
NRBP1
EXPH5
TNIP3
LRRC14B
FMN1
ZFPM1
RFLNA
DNMT3A
PPARG
CSGALNACT1
SLC4A8
GALNT6
DNAJB2
APBB1IP
PCCB
PIK3C2A
MTUS1
ARHGAP45
SHROOM3
KIFC3
NCOA1
ADGRG1
FGFRL1
PTPRD
TLK1
DOT1L
KMT5C
PICALM
SPR
LACTBL1
EHBP1
CALHM4
DUSP21
SCAMP4
ADAT3
DENND6A
MID1
MTRNR2L9
MEF2A
ZNF444
TNFAIP3
CCDC88C
SLC39A1
MICB
C9orf131
C11orf94
PARP4
HERC4
FBL
NRK
ULK2
BAIAP2
ALDH4A1
PPFIBP2
TREML1
CSF1R
TMPRSS11F
RNF19A
NEURL3
HDAC5
MORC4
TMCO6
EHMT2
C2
EDNRB
PDCD1LG2
ZMYND11
HSPB7
TENM3
PPP2R3A
RIOX1
PEX3
ADAT2
KRT71
ANXA6
KIAA1586
TNRC6A
GOLGA8B
FAM107B
SLC12A6
S100A16
ZNF552
TRIM16L
IGFL2
AGAP3
BATF
AP5B1
NEBL
SASH1
PGC
GRAMD1B
SYTL5
ING2
LATS1
SEPSECS
GSTO1
CYS1
TFDP2
ADAP1
PRDX3
MPO
PPEF1
KLF7
VNN2
SPECC1L
NAPEPLD
NSFL1C
ISM2
ZNF335
MYO18A
SPINK4
RPF1
C1QBP
MBOAT2
SLC6A4
ADIPOR1
RFWD3
MKRN2OS
KLF6
WDR87
SIPA1L3
MAN1A1
ARHGDIB
ZBED9
TIGD2
RANBP2
NHSL1
KYAT1
HK1
SGK1
PLS1
IL22RA2
CRISP1
BEST3
CWF19L1
SMC3
OR2B11
JUN
ZNF451
MEF2D
FKBP4
ALPK3
PPP1R9A
CRY1
UBE2V1
HTRA4
PLXNB2
CHD3
LMO7
TMPPE
MAB21L4
GLB1
CEP85
LOC112694756
CD59
BCAR3
PINK1
DACT2
RHOB
NDUFA4
FAM83A
TXNRD1
SPHK1
USP11
FUT8
TNS1
TMEM9
HMCN1
MPP1
GNAI1
ARHGEF3
PTN
DUSP3
PNKD
YEATS2
HSPA9
EPHA4
RAPGEF6
PES1
MYLK3
SDCBP2
IL31RA
FOCAD
ZFHX3
RTN2
RPIA
RIOK2
MTR
PALM3
LDAH
GMEB1
EPB41L1
P2RY6
SLC44A2
VIM
RILPL1
EIF3D
PTK2
CCNG2
ROPN1B
RPN2
NEU1
MROH8
TMEM68
TGS1
TRIM34
SLC13A3
GJA5
MYBL2
LNP1
TBC1D15
PRORP
PPP2R3C
PDGFB
CLOCK
DUSP9
THAP1
LOC644090
LPP
ACSL1
TGM2
TBC1D22A
LARS2
PRSS8
SUN1
VTCN1
SRP68
DDB2
SPAG17
RNF144B
CLCC1
TMIGD2
NAA38
LSR
GPRC5C
CYB5D1
CTDSP1
SLC29A1
AXL
SLFN12
PARD6B
HNF4G
EDEM2
TMEM211
BLCAP
ART5
TNKS2
ABLIM1
GSTA3
RASGRF1
FBXW12
CALM1
TNFRSF19
FBXO32
BMPR1A
ADNP
TMEM267
RAD9A
RAB30
GPR146
RNPEP
OSGIN2
ACTR1B
BRI3
ZZZ3
TGM1
NMI
NDUFB6
LGALS8
ZNF155
WT1
TRIML2
TLN1
RAD50
CREB3
GAR1
PCYT2
ELMOD2
DACT3
PDXDC1
CRISPLD2
AMD1
MTARC1
LATS2
CAPN8
STARD13
RBM45
CRYGC
DDX41
TGIF1
ZNF799
TNFSF12-TNFSF13
TNFSF12
PRSS22
CCDC183
RIMKLB
MGST3
CFAP45
MREG
CKB
BRD3
SMPDL3B
OSBPL2
CNN3
RPL6
PTPN11
PDCL
SF3B4
SLC41A3
FSCN1
CYSLTR2
LRRC75A
ENTPD5
DTD2
BBOF1
STK11IP
ERCC6L2
YIPF6
C11orf95
TPM1
ASAP1
MRPS24
GLDN
CHRNB1
BTRC
MYL6B
DGKD
CCNI2
SIGIRR
LMBRD1
GNA12
FBP1
AP2A1
AFAP1
FAM162B
SLC49A4
HSPBAP1
DYSF
CEP78
GAS2L3
ATG9B
WDR83
MAN2B1
AMOT
UBXN4
FER
ANK3
PPP6R2
UNKL
TBC1D24
CRYBA2
POLB
FGD4
CAMK2D
RASGRP2
DCTN1
BZW2
GET4
FAM169A
TBL1XR1
LAMP1
ZNF221
MIEF2
IMPA1