ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478468 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◣ SRX10478468: MCF-7

◢ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
DUX4
SIRT4
FRG2C
MTRNR2L1
H2BC5
H1-4
FRG2
APPBP2
BCAS4
RGS22
GTPBP6
H1-2
PSMD6
PFDN4
POLG2
TXNRD1
H2BC11
H2AC11
PTPN6
C12orf57
WDR93
PEX11A
FKBP4
TRIM37
COL23A1
STX16
NRAS
H4C8
SCRIB
H2BC4
H2AC6
NPAS4
H3C15
H3C14
H2AC19
H2AC18
BCAS3
GREB1
TPD52L1
NPEPPS
NCOA3
PPM1D
H2BC21
H2AC21
H2AC20
TUBD1
RPS6KB1
SGK3
CRYAA2
CRYAA
PARD6B
CHD2
H4C5
ARFGEF2
CLTC
TMEM107
CALM1
VPS26C
RBL2
USP32
POLR2J3
TEX14
RAD51C
MAZ
H3C13
H2BC18
EIF2D
PRUNE1
MINDY1
TNFRSF12A
THOC6
HCFC1R1
BRIP1
DHX40
RNFT1
SIX2
H2AX
ENTPD5
BBOF1
SMARCD2
TPM1
GSTP1
TRMT12
OPRL1
LKAAEAR1
FBP1
RARA
AGR3
SLC45A4
MAN2C1
TPTEP2-CSNK1E
ZMYND8
AKAP1
SPATC1L
SLC25A24
H4C7
H3C7
H2BC9
HTR5A
H4C15
H4C14
AMZ2
EIF1
ABCA5
CDH18
LLGL2
TTLL3
FAM53C
CDC25C
IMPDH2
RBBP5
C1QTNF6
SYCE2
HEXIM1
CSDE1
EHMT1
BCAS1
CAP2
RAE1
WBP1L
ISG20
INTS2
PLEKHG2
ZFP36
DPP8
BMP7
COIL
CELSR2
ABCA3
PIK3R3
MICU2
PTPN1
STMN3
RTEL1
H3-3B
SCAMP3
ARL6IP1
NOL11
TRIM33
HNRNPH1
SLC44A1
ID2
STAP2
MPND
JUNB
C6orf226
EXOSC6
SPTSSB
HIPK1
MRPS23
LMAN1L
VEZF1
NSG2
H2AC16
H1-5
BCAS2
FAM227B
DTWD1
THAP5
DNAJB9
ARID4A
SPAAR
FBRS
POLD1
RNF114
ARNT
SRSF7
TEX22
RPL12
PPFIA4
LRSAM1
MPV17
BAHCC1
FIS1
ZNF217
HEXA
SLC16A6
LAMC1
ARSG
CD55
AKAP8
ATP5F1E
CPLX2
PDXDC1
USP8
NPIPB9
ATXN7
SETD5
POLDIP3
H1-3
NELFCD
SNAPC5
CYB561
UBQLN1
COQ7
ATP6AP2
FUT8
EPN1
PBX3
DCLRE1B
AP4B1
EBAG9
TFF1
ATXN7L2
WDR6
ELAVL3
TMEM223
TMEM179B
SRSF2
PRMT6
MFSD11
KMT5B
FAM133B
CRBN
PRKRIP1
H4-16
H2AJ
FUT11
NAA60
TIPARP
GTF2A1
SLC25A19
IRF9
ARAP1
ARIH1
RERG
PRKAR1A
FNIP2
SRSF5
DENND2C
SLC24A1
PRMT2
INTS14
ADNP
MYL6
PHAX
ZC3H10
RPL41
MDP1
CHMP4A
PA2G4
LINGO1
ANKRD13D
POR
RPLP0
MTHFS
GID8
DPY19L3
DPM2
DIDO1
UTP18
MBTD1
NXF1
METTL2A
P4HA1
CYB5R4
TUFT1
HECTD1
FOS
EGR1
YJU2
USP42
GNG3
BSCL2
GTF2IRD2B
PIK3C2B
MAP3K3
DMRT2
BANP
SENP8
MYO9A
ACTRT3
MEMO1
ZC3H14
TRIM25
CYTH2
ID1
ESR1
ZC3H6
VCPKMT
TRIM44
C1orf56
TDRKH
NBN
H2BC12
H2AC12
NUCKS1
CSKMT
C11orf98
FAM220A
TBX2
PPIC
SLC44A2
KLHL12
STRADA
ZER1
HIGD2B
BBS4
STX10
IER2
TACO1
EDC4
DDX42
CCDC47
C3orf14
TDRD7
H4C4
ERAP1
CDK11A
BCAR1
KMT2E
SVIL
TOMM40
KRTCAP3
HBQ1
HBA1
ESYT2
C16orf95
L3HYPDH
JKAMP
LRRC37A3
GATD3B
GATD3A
SRCAP
LOC730183
ADPGK
TP53BP2
PPP1R3D
FAM217B
DHPS
LRCH3
TRIP4
PSMC5
FTSJ3
PSMB4
ZCWPW1
MEPCE
OTUD7B
GALK1
CCDC59
THOC3
NPIPB6
RAD23A
PHC3
THOC7
SH2B1
MVK
KRT15
PPP6R3
XKR7
NDUFS3
KBTBD4
SLC35C2
NOTCH2NLA
VMP1
PTRH2
NME1-NME2
NME1
NR4A3
RBM48
PEX1
SEMA4B
FBXW9
LYRM1
DCUN1D3
ROPN1B
UBC
MRPL21
IGHMBP2
RCCD1
PCTP
KLHL20
MRPS28
RINT1
MAPK1IP1L
C12orf66
PPM1E
NGRN
KCTD3
PFKFB3
CYB561D1
TRNT1
TMEM186
PMM2
IDI1
CNBP
CUL7
ST20-MTHFS
PWP2
LOC102724159
TCAF2
ERCC6L2
RPP25
MPPE1
LMAN2
CYP1B1
DGKZ
SMG8
PRMT5
MED13
ZNF43
DYRK1B
ALDOA
WWOX
MAN1B1
CACYBP
C2orf42
DSTYK
TSEN54
DPY19L4
CASKIN2
LEKR1
RIPK1
NPDC1
GSK3B
TPD52L2
ABHD16B
SSR3
STAT1
SEC22B
MAPK6
MDM4
IER5
IQSEC3
PAIP2
OSBPL2
BNIP1
AOPEP
PSMG1
RNF7
CLPB
PTP4A1
H4C11
DDX59
TMEM191B
PEX2
YWHAZ
WDR4
CYP51A1
RGS9
MEF2A
MRPS18C
HELQ
MSL2
NAPEPLD
EIF4A3
TMEM168
SEC13
PPDPF
ZNF768
SYT1
MRPL10
LRRC46
PSG5
PSG9
ARHGAP5
PLA2G4D
PSG1
PSG11
SLC5A10
MTRNR2L8
GLG1
EXOSC2
RNF43
WWP1
NIPSNAP1
PSG7
AP3D1
HSD17B4
ADAM17
PSG3
PSG8
MTRNR2L2
MSH3
DHFR
CCDC141
YTHDF1
ZDHHC1
TMEM52B
RAB17
ITGAM
PPP1R14D
ANKRD23
PSG4
LRP2
BCL2L13
ATP6V1E1
SLBP
CRPPA
MTDH
IFNAR1
KRTAP2-1
GTPBP4
DPEP2
ATP2B1
FAM110A
PIWIL3
RABGGTB
TMTC2
KRTAP3-1
MIS12
DERL2
PATJ
CDH1
C18orf21
SLC10A6
NAGLU
GSTO1
ENTPD1
ANKRD40CL
SLCO2A1
PSPN
RYK
ENPEP
COLEC12
ADGRG3
FRY
PKIB
BACE1
DNAJC15
GEMIN2
PHLDB2
RASA2
SEMA6A
ANKRD1
AMN1
ZBED1
DHRSX
CCDC81
COMMD8
SLC7A6
MEST
ABLIM1
CDK19
AMD1
SFXN5
RARS1
LNX1
ARHGEF18
PXMP4
SLC19A3
LIMS4
LIMS3
OSBP
EHF
FDFT1
LIMS1
UBE2J1
SH3BP4
EFNA1
OR10V1
DLG2
IL1R1
FAM89A
OLFML1
PRKCZ
SYBU
SH3YL1
ACP1
TSPAN10
NPLOC4
VPS37C
IGSF22
EID2
SLC7A7
TRMT9B
NTAN1
FGD3
ID3
SLC18A1
SH2D4A
PGS1
ZNF474
TMEM88B
ANKRD65
TRPM6
PTTG1IP
ZNF749
TMEM245
TAF6
CNPY4
SLC15A2
CCR5
TTC23L
CTPS1
ZNF592
ZNF343
PSG2
TMEM212
CHST6
PKP2
ZNF407
LSM14A
PACSIN2
NIBAN2
LDLR
ZNF503
IKZF3
HMOX1
ACER3
ACVR1
NKX2-3
NR4A1
KRT71
TACC1
MGARP
KIT
DECR2
USP6NL
IL34
USHBP1
TMPPE
GLB1
BABAM1
CLCN4
KLHL5
POU5F1
SAA1
CXCL2
CROCC2
PLAAT5
ZNF641
ZNF367
LGR5
C6orf163
ZNF398
GSTA4
INSL4
ERP27
OLR1
CALML5
SIX1
RBM15
SLC20A2
STARD8
SLC7A9
P2RX6
TET1
MARVELD3
RGPD2
RGPD1
SETD4
LHX8
HACD2
RALBP1
FBL
PLAC8
ATP13A2
CCNL1
NSD3
KRAS
GABRR3
SAMD7
DNAJC21
VIT
RGL1
ARPC5
ADGRF4
RBFOX2
ARHGEF10L
C6orf132
PIK3C2A
BAZ1B
CXADR
MED15
RHOH
CLDN10
IQGAP2
DGKD
CMTR2
IBTK
BIN1
LIFR
STS
SLC6A9
TSHB
SNAP23
CITED4
HPDL
TTLL7
SYNPO
RIPOR1
MIGA1
ASPSCR1
TRA2B
SLC12A3
FEM1B
C1GALT1
TRPM1
RTN4
ADHFE1
EVPLL
LTA4H
LSMEM1
KRT19
TRIM17
ITGB6
H3-4
SLC7A2
CBL
RASSF2
FREM2
ACER2
SNX27
TACC2
ATG9B
ABCB8
SEH1L
CTNNAL1
SLC38A9
SRI
LOC389199
FGF1
AFAP1
ZNF853
MYO6
KDM5C
SLC1A5
POLD4
OSBPL8
SLC25A34
PIP4P2
NBR1
KRT8
TSTD1
RPS14
MPP4
SPTLC2
MIDEAS
DUSP21
UIMC1
ST8SIA6
FUT3
CTNND1
FOXN4
CMC2
BANK1
CLYBL
DEPP1
HAPLN1
SLC23A2
HOATZ
BTG4
PLD5
MTUS1
LHX4
SUPT7L
SLC4A1AP
SLC17A5
KEL
GJA10
GALNT11
FHDC1
ASPRV1
PELO
ITGA1
ORAI3
BNC1
SVOPL
SLC25A13
ANXA3
NANOGNB
IFNL4
TMEM254
SCNN1A
LTBR
TLK1
ANKRD10
RFLNA
RAPGEF1
ZNF358
ZG16
SPAM1
HSD17B1
IGFL4
POLR2J2
BRD4
CSGALNACT1
ULK2
GAS2L3
SIK3
IL22RA2
GGCT
DAW1
RNASE7
RHPN2
NPL
RHOV
MREG
FGFRL1
ANKRD2
CDCA4
HSPB3
TTR
KCNJ15
CLPSL1
KIFC3
SLC25A26
CREB1
TENM3
PRSS8
TPST2
TMCC3
GRHL3
PTPRE
TTC8
FAM53B
DEK
CALD1
FBRSL1
KRT18
GM2A
TMPRSS11F
TNFAIP8
SMARCA2
CAMK2G
ANKRD31
RIPOR2
CORO2A
AIG1
SALL4
NEDD9
EPHB2
ACOT2
TRIM22
HCAR1
CXXC5
CDC14B
RABGAP1L
GHR
EHHADH
OVOL2
FRYL
CSRNP2
MRPL38
TTC39C
FAP
ATMIN
TTLL4
MAGI1
PTPN3
OR5H14
DLC1
STON1-GTF2A1L
ST6GALNAC1
WIPI1
FERMT1
NRBP1
MBOAT2
CALHM4
RHEX
MFSD4A
AMOTL2
SULF2
NIT2
EXPH5
SLC52A3
HAVCR2
CD164
TNIP3
LRRC14B
EPS8
MYBBP1A
GGT6
EGFR
FMN1
TGFB3
IFT43
CNNM3
NAGK
TMC1
ZFPM1
CREM
IGSF5
DNMT3A
TMEM150A
PPARG
ZNRF3
MS4A7
TMEM94
CLIC4
TFPI
SLC4A8
PLEKHM2
PAK6
GALNT6
CD36
RHNO1
FOXM1
CYB5A
EPB41L3
CCKBR
APOBEC3B
EDARADD
DNAJB2
CD2AP
APBB1IP
ZNF697
PCCB
TNF
LTB
DNM1L
SPNS3
NR1D2
NKIRAS1
RESF1
PLEC
MTF1
GPD1L
ADGRF3
GMFB
TNRC18
TSPAN3
HEXB
ARHGAP45
MRAP2
PLGRKT
CDK3
SLC29A1
NFIL3
CITED2
PPY
CSPP1
ZNF552
SHROOM3
ALDH3B2
NCOA1
MARCHF7
ILF3
MRTFB
ADGRG1
TYW3
SPAG9
CRYZ
GCM1
PRPH2
MID1
ATXN7L1
PTPRD
KLRC3
MRS2
ELF3
YY1
SLC39A10
ELMO2
DUSP14
USP44
CD177
TMC5
SMIM6
DOT1L
KRTAP4-2
KRTAP4-1
KMT5C
WDR91
LOC388282
RBBP7
ERVW-1
SLC22A23
PICALM
KTN1
CXCR6
CCDC88C
DCTD
CS
C1QBP
SULT1A4
SULT1A3
BOLA2
POLR1H
ARHGAP35
ZNF76
SPR
LACTBL1
EHBP1
TMEM185B
TPGS1
ARHGAP40
AIF1L
ACE2
WIPF1
PHLDB3
CAPN5
OR2B11
IGF2BP3
CSF2RA
SERPIND1
SCAMP4
KLF6
EPS15L1
ADAT3
SIRPA
DENND6A
NAALADL2
PLCXD3
TTYH3
SELENOI
PORCN
JCAD