ChIP-Atlas: Target genes

Potential target genes for MSX2

Query protein: MSX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10478469 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
MSX2's Target genes

◢ MSX2: Average

◢ SRX10478468: MCF-7

◣ SRX10478469: MCF-7

◢ SRX10003070: Trophoblast stem cells

◢ SRX10003071: Trophoblast stem cells

◢ SRX10003072: Trophoblast stem cells

◢ MSX2: STRING

WDR74
SIRT4
DUX4
FRG2C
FOXN4
MTRNR2L1
BCAS1
TXNRD1
SIX2
SLC7A2
MFSD4A
POLR2J3
CD36
GREB1
POLR2J2
TSPAN3
NPAS4
SLBP
NPEPPS
TMEM107
RBL2
POLG2
BMP7
TRA2B
BCAS4
H2BC5
H1-4
HES1
SRI
ADGRF4
PTPN6
C12orf57
NCOA3
FOS
BAHCC1
TMEM205
RAB3D
CCDC159
EDARADD
H3C15
H3C14
H2AC19
H2AC18
PFDN4
HSPA4
WDR93
PEX11A
RGS22
PSG5
SGK3
C1QTNF6
SCRIB
RUBCNL
ATP6AP2
SLC4A7
H2BC4
H2AC6
SLC51A
PLAGL1
IER3
FLOT1
SETD5
SMIM6
SPINK1
ID1
ID2
EGR1
ZNF337
ZC3H10
RPL41
FRG2
GSTA4
PSMD6
USP3
NRAS
SLC45A4
TRIM37
STX16
COL23A1
MITD1
PARP2
BCAS3
H1-3
VPS37C
TMEM94
HDGFL3
FOXJ3
ARID4A
H2BC11
H2AC11
GMNN
BANP
CD55
CHD2
PSG9
TNFRSF12A
THOC6
HCFC1R1
ZNF331
SMYD3
ARNTL
ADAMTS16
SLC25A25
NAIF1
INSM2
MACC1
CAPN13
SMARCD2
H1-2
PRSS41
GTSF1L
HEXIM1
GTPBP4
TACC1
QSOX1
ARHGEF6
PLEKHG2
PPP6R3
APPBP2
RNFT1
MIDEAS
CAP2
RP1
YWHAZ
KMT2E
ARPIN-AP3S2
ARPIN
RBBP8NL
BMPR1B
H2AC16
H1-5
RUVBL1
SFXN2
ARL3
ZMYND8
AKR1E2
CLTC
GSTP1
FURIN
JPT1
RASEF
KLK11
KLK10
KCNJ15
FAM214A
H2BC21
H2AC21
H2AC20
OARD1
NFYA
OPRL1
LKAAEAR1
ZBED1
DHRSX
C2CD4D
UCKL1
HTR5A
LAPTM4B
GRHL2
SPTSSB
TUBD1
RPS6KB1
NFX1
TRIB1
P4HB
PPM1D
USP32
MACROH2A1
LSMEM1
ZNF76
TRIQK
KIAA1217
H4C8
CCDC59
RFESD
GTPBP6
STX10
IER2
KL
MPP7
IL1R1
POLR1H
BIRC5
STAP2
MPND
FBXL18
KIAA0319
BRIP1
VPS26C
POLD1
FANK1
NAALADL2
PRKAG2
POLDIP3
CYP3A43
ENSA
ID3
TPD52L2
ABHD16B
TFF1
EPB41L4B
SRSF5
KRTAP3-1
ERP27
CBWD5
CBWD3
CERK
ESR1
CUL7
IGSF5
SNAPC5
USP42
RAD23A
IER5
C1QTNF9
USP36
ZFP36
PPP4R3A
FREM2
TRMT12
SERPINA3
RPEL1
PTPRE
DUSP14
FAM160B1
VEGFC
TMPRSS4
MICOS10-NBL1
MICOS10
EIF2D
PALLD
MAZ
RARA
PFKFB3
SPATA2
ZBTB4
SLC35G6
POLR2A
ALDH3B2
CDS1
JUNB
XKR7
SKA2
PRR11
MRPS18B
NAA60
TIPARP
ZHX2
PLEKHH2
ROPN1B
SLC25A24
ARNT
DNAJC16
CASP9
SULF2
CREM
ARAP1
TTC6
FOXA1
PIK3R3
IFNGR1
DHX40
SULF1
STMN3
RTEL1
ARHGEF18
RHOV
ERVW-1
TBL1X
SPRR2F
DGAT1
ZNF217
POLR3E
C10orf67
APOL4
ZBTB7C
LYRM1
DCUN1D3
MRPS28
SLC37A4
MPDU1
LOC100996842
CD68
ANP32E
MIS12
DERL2
SEPTIN9
H2BC15
H2AC15
CLDN10
IL22RA2
C3orf14
CHST6
ZC3H6
TFRC
PTPRR
NXF1
TAGLN2
GPD1L
NXNL2
HSFX4
WSB1
GTF2A1
SRSF7
RNF223
PNMA1
ATG14
PHLDA1
ACOT2
CS
TMEM217
TBC1D22B
PPIA
HDAC11
ISG20
SSTR5
GPBP1
ESYT3
SPAAR
EPPK1
EDDM3A
RNF170
HOOK3
ITPRID1
DSTN
BFSP1
H3C13
H2BC18
H4C15
H4C14
DCLRE1B
AP4B1
HOPX
CSTF1
AURKA
NQO1
MYOG
PAPOLA
PIK3C2G
H3-3B
IQSEC3
CALM2
POR
CIB3
LNX1
PGS1
CALML5
RBM48
PEX1
TPD52
RAB11B
CSNK1A1
SLC25A51
ANKRD35
CLYBL
H4C5
CYB5R4
PRICKLE2
FKBP4
INTS2
CSKMT
C11orf98
TM4SF19
FAM161B
CUL9
COQ6
CCDC138
SYCE2
LGALS8
ARL6IP1
CYB561
RELT
ELAC1
PPP5D1
CALM3
UFL1
MLLT11
CDC42SE1
AP3D1
DCAF4
H4C7
H3C7
H2BC9
AADAC
SEMA5B
SDC4
LRRFIP2
ARMC1
ZNF398
PRUNE1
MINDY1
MNT
CNOT8
B3GNT6
RHOBTB2
VASN
LSM14A
TLE3
FAM53C
CDC25C
TDRKH
FARP2
DNPEP
ZNF367
CBWD6
IRF9
STAT6
IVNS1ABP
OSBPL8
C2CD2
LSM10
C11orf80
FGF1
CRYAA2
CRYAA
MTHFD1L
AKAP1
U2SURP
BCAS2
TMBIM6
SPO11
FAM53B
CSRNP2
MS4A7
TPD52L1
SVIL
MTUS1
FAM227B
DTWD1
ARIH1
ZNF33A
RTF2
PSMB10
POLR2J
CTRL
KLF6
TNFSF15
STX1A
GNE
FHL1
CHST15
SALL4
MDP1
CHMP4A
TMPRSS13
DDX59
HES4
COX16
SERPIND1
SRCAP
LOC730183
MGLL
FAM24A
LIMA1
PSMC5
FTSJ3
WNT1
LGMN
PRKRIP1
HSPA1B
ZFHX2
THTPA
THEM4
MYC
SPIRE2
ZNF609
SLC35A3
HNRNPA2B1
DOLPP1
CBX3
DLG2
RHOD
HSPB1
P2RX7
HSF1
BOP1
ZFAND6
TMEM126B
PCK2
NRL
LY6D
LRRC6
TEX14
H2AX
RAD51C
DBR1
CLDN4
ARFGEF2
ATP1A1
GTF2H2
SLC34A3
RNF224
KYNU
INTS1
GTF2H2C_2
CYSRT1
RERG
ZNF34
ST3GAL4
RPL8
HEXIM2
TMTC2
MYO6
TRIM7
MINDY4B
H2BC8
H2AC8
H2BC12
H2AC12
RPLP0
USP15
RBM3
MTFR1
TGFB3
IFT43
NBN
IMPDH2
LAPTM4A
S100P
CATSPER3
HOXA3
ELK4
CHD4
ADCY5
CSGALNACT1
WWOX
ATP5F1E
DENND2C
SULT1A4
SULT1A3
BOLA2
ZNF425
CCNT1
ARSD
TUFT1
SLC22A5
NOTCH3
MTA3
KCNG3
EIF1
IDH2
PKIG
AHCY
TSGA10
SECISBP2
PIP5KL1
PCGF5
C2orf15
ACTRT3
TUBA1C
TLCD2
SLC25A43
HBP1
DGKZ
C19orf33
TMEM126A
RPL13
COPS7A
BRMS1
B4GAT1
VPS45
TTLL6
TFAP4
PYGO2
LOC101928120
FAM131A
MRPS23
ATG9B
ABCB8
EPO
FUS
TNPO1
TFAP2C
SCFD1
DMXL1
CLBA1
MYL6
UBC
MYLIP
CEP63
BARHL1
ANAPC13
ATP2B1
FBXO43
CPPED1
FAM220A
SMG8
PLK2
GLTP
CPLX2
KIF26A
ANKRD36
AARS2
TOMM40
SGF29
NADK
KLF10
KRT18
HIPK1
DHPS
RAB11A
EIF2AK2
ARID1A
NIPSNAP1
CALHM4
TNRC18
CYRIB
PLD1
MAN2C1
ANKRD36C
PPP2R5E
PMEPA1
RPL38
CHD1
PTP4A1
AKAP8
RXRA
SHOC2
RPS20
RABGAP1
PRRT1B
ELP5
CTDNEP1
BBIP1
CCNL1
H4C11
KPTN
EIF2AK3
HNRNPH1
RCAN3
TACO1
MRPL21
IGHMBP2
DDX5
SCAMP3
PA2G4
GTF2IRD2B
CLIP4
CHCHD5
ATP2A3
RNF43
KLRC2
METTL2A
PDCD4
NDUFC2-KCTD14
NDUFC2
FZD1
FN3K
COMT
CCDC174
ASB2
H4-16
H2AJ
ZCWPW1
MEPCE
ZNF3
TTC39C
TRIP4
SPATC1L
LMTK2
CSDE1
LEKR1
GTF2H2C
CYP51A1
NR4A2
UTP18
MBTD1
DAPK3
DSTYK
RPTN
PPP2R5C
DHRS7B
MEF2A
PSMG1
TTLL3
YJU2
RPL10
LOC102723996
ICOSLG
CASP7
NANP
GDPGP1
CIB1
TCAF2
RBBP5
STRADA
NDUFS3
KBTBD4
DKK1
SLC50A1
PEDS1-UBE2V1
PEDS1
IP6K3
DPM3
CLDN9
ZER1
RCCD1
ZNHIT2
ZNF225
SSC5D
RCOR1
PDE8A
PDCL3
NAT14
FAU
MTMR11
EBAG9
CYB561D1
TPCN1
NOTCH2NLC
MIS18BP1
GFOD1
FCF1
AREL1
EDC4
DDX42
CCDC47
IRF2BPL
GTF2H4
TBX2
AMOTL2
AFF1
PSMD12
EIF4B
HOMER1
PHC3
ZC3H4
SIDT1
FAM43A
ACP3
SREK1
TEDC1
CRIP1
PAIP2
USPL1
NAT10
HSCB
HMGB1
GABPB2
CHEK2
KRT13
ZFP1
RNF32
RABIF
CHRM4
MTMR4
GFM1
EIF3E
MEMO1
C16orf95
MFSD14C
CLK3
PKP2
TM9SF4
RUSF1
CRELD1
EPS8
CLUAP1
C16orf90
ZKSCAN2
FANCI
VPS54
ISY1-RAB43
ISY1
CRNKL1
CFAP61
NR1D2
NKIRAS1
NOL11
NFYC
LSMEM2
GBE1
ADAT1
TBX4
SSBP1
SNX17
SERTAD1
ITPR1
EIF2B4
CTBP2
TSPAN15
ECI1
OSCAR
NDUFA3
MRPS7
IPO4
GGA3
PLEC
GPRC5A
ZNF721
TDRD5
PIGG
DNAJC25-GNG10
DNAJC25
SRA1
BOD1L1
WDR4
EED
TRIM45
RPS29
MAPK6
SRP54
RNF103-CHMP3
RMND5A
RIPK4
ACYP2
CLPB
GPSM3
NOP16
HIGD2A
SEC22B
UNC13D
HEATR6
TNFAIP1
IFT20
STAT1
DIAPH1
USP2
L3HYPDH
JKAMP
ADPGK
RPP21
MROH1
EMC2
YTHDF2
MAVS
DUS2
DDX28
FBXO34
PDE7A
WDR61
ARHGAP5
PLA2G4D
PSG1
PSG11
SLC5A10
MTRNR2L8
GLG1
EXOSC2
WWP1
PSG7
HSD17B4
ADAM17
PSG3
PSG8
MTRNR2L2
MSH3
DHFR
CCDC141
YTHDF1
ZDHHC1
TMEM52B
RAB17
ITGAM
PPP1R14D
ANKRD23
PSG4
LRP2
BCL2L13
ATP6V1E1
CRPPA
MTDH
IFNAR1
KRTAP2-1
DPEP2
FAM110A
PIWIL3
RABGGTB
PATJ
CDH1
C18orf21
SLC10A6
NAGLU
GSTO1
ENTPD1
ANKRD40CL
SLCO2A1
PSPN
RYK
ENPEP
COLEC12
ADGRG3
FRY
PKIB
BACE1
DNAJC15
GEMIN2
PHLDB2
RASA2
SEMA6A
ANKRD1
AMN1
CCDC81
COMMD8
HECTD1
SLC7A6
MEST
ABLIM1
CDK19
AMD1
SFXN5
RARS1
PXMP4
SLC19A3
LIMS4
LIMS3
OSBP
EHF
FDFT1
LIMS1
UBE2J1
SH3BP4
EFNA1
OR10V1
FAM89A
OLFML1
PRKCZ
SYBU
SH3YL1
ACP1
TSPAN10
NPLOC4
IGSF22
EID2
SLC7A7
TRMT9B
NTAN1
FGD3
SLC18A1
SH2D4A
ZNF474
TMEM88B
ANKRD65
TRPM6
PTTG1IP
ZNF749
TMEM245
PTPN1
TAF6
CNPY4
SLC15A2
CCR5
TTC23L
CTPS1
ZNF592
ZNF343
PSG2
TMEM212
ZNF407
SLC44A1
PACSIN2
NIBAN2
LDLR
ZNF503
IKZF3
HMOX1
ACER3
ACVR1
NKX2-3
NR4A1
KRT71
MGARP
KIT
DECR2
USP6NL
WBP1L
IL34
USHBP1
TMPPE
GLB1
BABAM1
CLCN4
KLHL5
POU5F1
SAA1
CXCL2
CROCC2
PLAAT5
ZNF641
LGR5
C6orf163
INSL4
OLR1
SIX1
RBM15
SLC20A2
STARD8
SLC7A9
P2RX6
TET1
MARVELD3
RGPD2
RGPD1
SETD4
LHX8
HACD2
RALBP1
FBL
PLAC8
ATP13A2