ChIP-Atlas: Target genes

Potential target genes for HDAC4

Query protein: HDAC4
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8213853 | SK-LMS-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC4's Target genes

◢ HDAC4: Average

◢ SRX2140208: MM.1S

◣ SRX8213853: SK-LMS-1

◢ SRX11525509: SK-UT-1

◢ SRX11525512: SK-UT-1

◢ SRX13466113: SK-UT-1

◢ SRX13466116: SK-UT-1

◢ SRX6054277: SK-UT-1

◢ HDAC4: STRING

MTRNR2L2
MSH3
DHFR
MTRNR2L1
DUX4
FRG2C
MTRNR2L8
NPAS4
H4C12
FRG2
H4C3
H1-6
DNM2
H4C11
SPAAR
SP2
CLPB
COL23A1
RFX1
CCDC200
PHB
EVI5L
UNK
H3-3B
H2BC4
H2AC6
RAG2
IFTAP
H4C2
H3C2
FEM1A
SP1
ALKBH3
PHF12
KHSRP
CIC
CHMP4B
RAB5B
SLC35B1
PAK1IP1
C6orf52
POLR3F
DZANK1
H4C5
H2BC7
EIF3F
DDX49
COPE
PWWP2A
RPL32
ZNF143
MACC1
PHC2
H4C15
H4C14
LAS1L
TMEM70
ELOC
HIKESHI
ZNF165
ZFYVE1
UBB
RBBP5
ZBTB38
RPL35A
IQCG
ANKHD1-EIF4EBP3
ANKHD1
GPR137
NDUFS7
RPS7
SF3B6
FAM228B
TEPSIN
NDUFAF8
C19orf53
AP2S1
GTF2H4
SCNM1
LYSMD1
RPS3
FBXL19
CALR3
C19orf44
INTS9
HMBOX1
PHF19
TMEM208
LRRC29
PSMC5
FTSJ3
ASAP1
BOD1
WDR74
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
CCDC146
RWDD1
TPCN1
TMEM60
PHTF2
CACTIN
STX16
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NCLN
H4C8
SUCLG1
NDUFS3
KBTBD4
PRMT1
MRPL24
SLC25A25
NAIF1
HNRNPC
UFD1
CDC45
NME1-NME2
NME1
ZNF335
RPS20
PNPLA6
UCKL1
STIP1
DCAF7
SPATC1L
WDPCP
MDH1
PIN4
PRICKLE3
GTPBP6
OPRL1
LKAAEAR1
TMEM101
SH3BP4
PAFAH2
MAPKAPK5
TSSC4
SPHK2
RPL18
FAM83E
ANKRD40
CDCA8
C1orf109
NPRL2
CYB561D2
RASGRP3
MRPL54
APBA3
OSBP
ANAPC5
SMG8
EXOSC5
BCKDHA
H4C4
ZNF687
ABCF2
AURKAIP1
WDR97
MAF1
NLK
PES1
TOM1L2
DRC3
LARS1
POLR2E
ZNF367
PPP1R12B
CENPA
VIPAS39
AHSA1
ZNF17
UBR2
CYCS
TES
CCN1
ARHGAP22
G3BP1
LMO7
MMACHC
CCDC163
SEC61B
ALG2
TNIP1
CCL26
RBM42
NEGR1
NDUFA4
LOC100996750
KRTAP4-7
LRCH4
FBXO24
CGGBP1
ZNF654
SLX4IP
MKKS
ASB2
GSK3A
YIPF2
TIMM29
ZNF576
IRGQ
KRTAP4-9
ING4
PEMT
XAB2
PCP2
KATNB1
ZNF223
CCDC124
EIF2AK3
PPRC1
CCDC174
CARD16
THAP1
ISY1-RAB43
ISY1
SIRT2
NFKBIB
API5
YJU2
LSG1
TRIP10
GPR108
STT3A
PSENEN
LIN37
C19orf67
NRP1
SLC39A9
ERH
AK2
NVL
RPL18A
TNFRSF19
ADAMTSL1
CABCOCO1
SLC8A1
IFRD2
VPS50
HEPACAM2
CALCOCO1
FAP
NAV3
TCEA2
ARID5B
DDX23
TMEM115
ID3
IRF2BP2
PEX14
DFFA
NEBL
THRAP3
TBL1X
HDAC9
GSPT1
BANP
PRCC
TSN
CCDC90B
TSNAXIP1
RANBP10
EHF
GALM
SMPD3
C16orf91
TSC2
NTHL1
MTOR
PNKD
AAMP
SYMPK
FOXA3
OR4M1
ZNF225
ID1
NUP205
ST3GAL2
CCAR2
C8orf58
INVS
ERP44
ZNF268
UBQLN4
LAMTOR2
ZNF547
TRAPPC2B
PRR14
ORMDL3
SIRT4
SCAF1
RRAS
NUF2
BUB1B
POLDIP3
COMMD1
CCT4
SF3A3
RGPD2
RGPD1
SUPV3L1
C1orf159
FASTKD1
SLC35E2B
RANBP2
FAM168A
NUDCD1
PRRG2
NOSIP
PSMD11
DSTYK
OR4Q3
TMEM107
TACO1
NDC80
METTL4
OAZ3
MRPL9
NFKBIL1
ATP6V1G2
TBL3
SNX17
EIF2B4
GBA
DYNC1I2
ZNF383
TMEM94
TXNRD1
SSR3
SLC39A1
CRTC2
SPSB3
HEXB
FRMPD4
ZSCAN22
SUPT7L
SLC4A1AP
BMF
STAM
TFPT
PRPF31
ARID2
GATB
SSBP1
SP5
UFSP2
SART3
ISCU
C4orf47
VCPIP1
C8orf44-SGK3
SCRIB
ZNF140
UBAC1
TSNAX
SNX16
SUFU
ACTR1A
HRCT1
MICOS13
HSD11B1L
FARSB
HEXIM2
RNASEH2A
PRDX2
FLAD1
NUP107
CP
COMMD9
NR6A1
ZNF608
TIMM21
MTRNR2L9
FBXO15
VTI1B
COX16
DDX39B
ING3
ZNF235
TNFRSF12A
THOC6
HCFC1R1
PSPN
ALKBH7
KHDC4
LMAN2
WDR46
PFDN6
RPIA
ZNF417
RAB11B
CNIH4
MEIS1
EXOC3L1
E2F4
PANK4
HES5
MRPL53
ZC3H10
RPL41
ZNF444
TBL1XR1
TRDMT1
KRR1
REXO1
BAHCC1
PIGL
NCOR1
FAM187A
EFTUD2
CCDC103
SEC11C
TRAF7
NFIB
DDX41
EMILIN1
KBTBD6
TRAPPC6B
PNN
TMTC3
CEP290
CAND1
GOSR2
NMT1
DCAKD
MRPL21
IGHMBP2
METTL3
TULP2
NUCB1
SRSF11
LRRC40
C19orf48
INTS1
MED27
AHCYL2
ZBTB45
TTI2
TMEM242
ZSWIM3
ACOT8
RNF121
LOC100133315
ZFYVE19
DNAJC17
UTP11
UBE2I
HNRNPL
CDK5RAP2
TM4SF18
PCM1
CCP110
ZFPL1
TMEM262
CDCA5
TATDN3
NSL1
COX7C
NUDT13
TBC1D10B
RPL27
PSMB6
MYLPF
ATP6V1G1
EMILIN2
TCERG1
MTRNR2L10
ATP5F1B
SSBP3
ZMAT2
GTF3C3
VWA5A
RPS27A
IPO13
CLHC1
PHB2
SLC25A20
BUB3
NEDD8-MDP1
NEDD8
GMPR2
GET3
TAOK3
SUDS3
PCBP1
KRT15
CLN3
APOBR
RPS6KB2
MRPS7
GGA3
ZNF337
SUGP1
MAU2
C12orf43
MRPL28
SEL1L
PPP5D1
CALM3
USP17L22
USP17L20
USHBP1
BABAM1
JOSD2
HNRNPUL1
FNDC3A
ASPDH
ZNF384
SHPK
EMCN
CTNS
CAPN15
NOC4L
NDUFAF5
ESF1
DDX51
NDUFB5
MRPL47
CTDP1
ZNF691
MITD1
RHOT2
KMT2B
ZNF500
RPL9
LIAS
RARB
CTU1
ZNF776
EXOC4
STK36
RNF25
RBL1
ZNF605
EXD2
SMARCAL1
PPP1R12C
ARHGEF1
PPP6R1
SRD5A1
EMC4
TRIP4
KRT23
MRPS23
SEC13
COPS7A
TRMO
GSTO2
VPS25
TOP2A
SMARCD2
SELENOH
PABPN1
DLGAP1
DHX8
RPAIN
NUP88
CD2BP2
PEAK1
NOP16
HMG20A
HIGD2A
LYRM4
FARS2
AP2M1
SSBP2
MRPS18C
HELQ
TMEM160
USP48
SNX1
CIAO2A
VEZT
IARS2
FGD6
BPNT1
SMAD3
RPL37
EPS15
CRADD
STAM2
UBE2J1
FBXW11
PDE6D
INO80C
COPS7B
ATP5MG
H3C15
H3C14
H2AC19
H2AC18
CCNL1
ZNF211
SYT7
MTMR9
SLC25A19
OR6B2
NDUFA10
TLE3
GLIPR1L1
CAPS2
USP30
PRORP
PPP2R3C
RCAN1
PTEN
KLLN
CCL3
MARS1
ARHGAP9
TMEM109
DMAC1
NDUFB3
MTRF1
INTS10
FAM126B
ZCCHC4
ARHGAP17
MYOM2
MT2A
TPRKB
METTL26
LTN1
CSDE1
TM9SF4
STK25
GABPB2
DYNC2I2
RABAC1
ZNF688
ZC3H12A
SESN1
GUF1
CEP57L1
TOMM40L
APOA2
ARHGEF2
TBP
PSMB1
ZNF420
BRWD1
ZCCHC8
TRAPPC9
VARS1
VRK1
KLHL29
FCF1
AREL1
DENND1B
TOR1AIP2
TOR1AIP1
GORAB
PLEKHM3
SF3B3
COG4
COMMD2
RPS23
ATP6AP1L
SREK1IP1
LTA4H
HSPA9
CWC27
HEMK1
C3orf18
ZNF628
NR1H3
ACP2
SYNGR4
ID2
ZSCAN5A
RPL21
BMERB1
NFATC2IP
EIF4A1
ABT1
TJP3
SF3B5
ZC3H6
SIX1
PROSER3
HSPB6
ZNF286A
UTP3
RBM28
PNKP
CCL3L3
CCL3L1
RPGRIP1L
MAMDC2
FTO
MDM2
ENPP4
EIF4A3
CLIC5
ZMYND8
TRIM55
ACTL6A
NMNAT1
LZIC
KLF2
ZSCAN32
ZNF174
XPNPEP3
ST13
GCLC
ZNF548
LNPEP
ATP2C1
ZKSCAN8
PEX3
ADAT2
KLF6
CA11
TMEM256
NLGN2
IER3
FLOT1
HBP1
RPL14
PTDSS2
MED24
TEKT2
ADPRS
FUT10
SCT
CDHR5
CCDC59
TMEM63C
RAB5C
RAP2B
PRDM15
CCL5
TXNL4B
TIMMDC1
DHX38
ASXL1
ALG10B
SMCO1
CXCR5
MYEOV
MPV17L2
HCAR3
MCAT
DPP9
CNOT1
CCDC39
ADO
UQCRC2
TPGS1
PEX26
ZNF56
RTRAF
RTF2
KCTD5
MDM4
ILF2
CCM2
UBE2H
NCOA7
KANSL3
FER1L5
TJP1
RUFY3
VPS52
RPS18
C1orf198
TTC33
TRMT10C
TGIF1
COX7A2L
TRAPPC3
KDM6B
ZPBP2
USP3
RGS8
IKZF3
UBC
SNRPB
SKA2
PRR11
DRAP1
C11orf68
KAT6B
CSNK1G3
WHAMM
HEXA
FSD2
CHST12
BBX
NDUFC2-KCTD14
NDUFC2
KMT2C
HOOK1
RIIAD1
NUP153
MED23
MAP2K3
IRF2BPL
CELF3
NGB
NAT16
SLC33A1
CMSS1
BIN2
PARP2
BTRC
SNRPD3
LAMP1
GUCD1
EML2
DOLPP1
LRRC14B
FMO4
DHX33
AQR
AP1G1
MNT
FGG
POLG
MRM3
GLOD4
SNX15
MRPL1
DCP1B
C2orf42
HSD11B1
LIME1
INSR
NTMT1
C9orf50
ANP32C
SATB1
PXMP2
POLE
LEFTY2
FAAP24
CEP89
TPST1
RPS13
IFIT1
COPS8
TP63
CCDC77
ZNF26
WBP1L
MRPL20
LUC7L2
FMC1-LUC7L2
FMC1
CDC20
CEP295NL
ZNF451
WAPL
GALK2
COPS2
TYK2
TMEM79
STMN3
SMG5
RTEL1
PSMD4
KDSR
TLR5
TIMM22
STAP2
SMARCE1
RAD51AP1
PRPF19
NR1H2
MPND
EPYC
CWC25
C12orf4
RBM25
PRPF18
WDR83OS
WDR83
TUT1
TMX2
SPTLC3
MED19
MAN2B1
KIF16B
FDPS
ZNF749
ZNF609
EPRS1
ZNF565
ZNF146
SCYL3
MRPL44
ZNF552
RAP2A
GEMIN6
CRB1
C16orf72
KIF22
COPZ1
CCR2
ARNTL
SPC25
SCAMP4
RAD51AP2
FOS
ADAT3
ZNF226
SAP30BP
RECQL5
FAM156B
FAM156A
OCSTAMP
MYCBP2
NCDN
MFAP3L
KIAA0319L
CDK8
ATP5MC2
TSC1
TDRKH
RPL29
RAB40B
PHF23
GFI1B
DVL2
ZNF584
ZNF419
RANGAP1
RABL2A
MAMSTR
FOXP2
DHX16
WBP2
PTMA
NPIPB5
KLHL20
CLEC7A
SART1
PLCD3
DPEP3
ATG4C
ACBD4
UNC93B1
TBCK
STOML2
MED6
AIMP1
NWD1
HAX1
ERVMER34-1
C3orf38
ATXN2L
PEX2
P2RY10
OXCT2
CYP2R1
CRYAA2
CRYAA
SNAPC3
PSMD1
IFI44L
DDR2
TLDC2
CSTF1
AURKA
SH3GL1
GABARAP
CHAF1A
PSAP
NDUFAB1
NDUFA2
IK
EMX1
ECT2
TOMM40
TFB2M
RGS3
MTR
KCNN3
FBXW9
DDI2
CNST
ZSWIM1
ZNF668
ZNF646
SLMAP
HIRIP3
CHD6
TAF6
PTGES2
PNISR