ChIP-Atlas: Target genes

Potential target genes for SOX9

Query protein: SOX9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX13867217 | MCF-7
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
SOX9's Target genes

◢ SOX9: Average

◢ SRX718108: hESC derived pancreatic cells

◢ SRX4065343: hESC derived retinal cells

◢ SRX4065344: hESC derived retinal cells

◢ SRX4065345: hESC derived retinal cells

◢ SRX4065346: hESC derived retinal cells

◢ SRX4065347: hESC derived retinal cells

◢ SRX4065348: hESC derived retinal cells

◢ SRX11220467: HT-29

◢ SRX11220468: HT-29

◢ SRX768290: HT-29

◢ SRX11416753: KARPAS-422

◢ SRX11856133: LNCAP

◢ SRX11856134: LNCAP

◢ SRX11856137: LNCAP

◢ SRX11856138: LNCAP

◢ SRX11856139: LNCAP

◢ SRX11856140: LNCAP

◢ SRX11856141: LNCAP

◢ SRX11856142: LNCAP

◢ SRX359919: LoVo

◢ SRX13867212: MCF-7

◢ SRX13867213: MCF-7

◢ SRX13867216: MCF-7

◣ SRX13867217: MCF-7

◢ SRX10175282: PANC-1

◢ SRX10175283: PANC-1

◢ SRX1510444: VCaP

◢ SOX9: STRING

SMARCD2
FAM102A
DGLUCY
MYH14
FAM227B
DTWD1
CNP
WWOX
PPDPF
KANK1
PFDN4
PAQR4
PDE4DIP
SLC35B2
MTF2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
RUBCNL
LAD1
TRIM37
PSMD6
B3GALT2
POR
MBNL1
PRR7
STX16
KMT5B
PARD6B
PPP2R2B
ZKSCAN1
RTKN
CDK2AP1
TMEM258
FEN1
BTBD3
C2CD4D
BACE1
PRORP
PPP2R3C
GPSM3
SPATA13
NCOA3
HR
ATL1
IFT46
MTMR7
DHX36
NFE2
DCLRE1B
AP4B1
ZCCHC4
ZHX3
EMSY
SYT1
COL9A1
LAMA4
CNIH1
ABCA5
N4BP3
DRAP1
C11orf68
STX18
CDYL
CTHRC1
PPP6R1
DPY19L4
CCDC130
HEATR5A
ZNF180
PAPSS1
CNPY2
MYADM
ARHGAP27
SART1
TRIM2
HEXIM2
GAL3ST4
SLC25A10
USP32
KANSL3
PDXDC1
SMIM5
ZNF609
CAPS2
CIPC
AP4E1
MEF2C
DLST
CSDE1
PLEKHG4
KMT2A
ZNF24
E2F6
RNFT1
HMGB1
USPL1
RMND5B
VMP1
PTRH2
SLC33A1
PCDH9
EIF2D
EPYC
WWP1
SULF1
CA8
NWD1
TRIM50
PCDH1
SSBP1
GAS7
MYO5C
SLC35E2A
TRIM33
EFNA4
PLA2G7
PMP2
PI16
HDAC11
USP15
TMCC2
NOXO1
SYT7
TMEM170A
PPP1R3D
FAM217B
SMC4
IFT80
SLC11A2
CNOT6
CCDC200
SCAF8
DCSTAMP
HOXA3
SOX6
EHF
PTP4A1
DGAT1
SORT1
RPL26L1
ETV4
H3C6
THEM4
SEC14L2
WDR53
FBXO45
GTF2H4
LCE2A
NME1
INTS12
GSTCD
RBBP5
ARL6IP1
STARD13
PDE4D
SUOX
WDR74
KLHL32
SLC44A1
CFAP20
KDSR
FGFR4
YLPM1
INPP4B
OGA
MKRN2
ZNF787
ARF6
CHST11
PPIB
MRPL21
IGHMBP2
VIRMA
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
RSAD1
HSPA2
COL9A2
POC1B-GALNT4
POC1B
GRK5
RPS7
LEPROT
LEPR
PIK3R1
MAP4K5
ANK3
CYTH1
ITGB4
NELFCD
ZNF277
DOCK4
CTNNB1
GBA
TPK1
DAAM1
USP3
STRADA
SPATA2
EEF1A1
USP8
HACL1
BTD
RPL27
NEDD4
FAM104A
C17orf80
PLEC
PPME1
C2CD3
TACO1
ARID2
MRPS18A
MYL12A
VGLL4
CGRRF1
TEX14
RAD51C
PREX1
MRPL40
HIRA
HNRNPH1
BARHL1
DMXL2
FAT1
MYL12B
HIPK1
CTDSP2
DNAJC14
BRIP1
RPL30
ATXN7
DSTYK
GABPB1
DECR1
CORO2B
BCAS3
AURKAIP1
KLF10
LTBP1
PRKAB2
CHD1L
SLAIN1
TRIM16L
ADAT1
DNAAF3
LIMCH1
GTPBP2
S100A13
EFCAB2
RAB17
S100A1
MAPK6
PRKCI
PPM1D
LCK
PRKDC
MCM4
COMMD2
SPDYE14
SPDYE10P
CASTOR2
POLR2J3
ARL8B
TRIM74
SRF
KIF21A
CPLX2
DKC1
EFNA1
PEMT
MMACHC
RHOJ
MED23
TBC1D31
DRG2
ATP5MC2
CLUAP1
OPA1
THAP12
GVQW3
ZNF444
MRPS31
BPTF
FAM207A
PELI1
SPAG1
SMG8
TIAL1
SLC39A6
ELP2
SRRT
CEP85L
PRDX2
WDR11
TADA1
ZC3H3
MAFF
AMOTL1
HK2
RTL9
CLTC
ATP10B
ARHGAP19
FZD1
LRRC37A3
SPTBN1
CDIPT
VCPKMT
OTUD6B
SPRYD3
GSTA4
HUS1
HERPUD2
RMDN1
TNRC18
TEN1
ACOX1
GNB2
RHOBTB3
WIZ
PEX3
ADAT2
KRT8
NHP2
CYP19A1
RBM4B
BRWD1
NSFL1C
POLR3E
NDUFAB1
EIF2S1
ATP6V1D
SLC6A14
MRPL44
CCDC12
EIF3E
RHOT2
UBE3C
DENND2C
DCUN1D1
NOL11
RBBP8NL
MLEC
CCDC146
CDK5RAP3
OAZ3
ITPK1
ETNK1
EIF1AD
BANF1
COBLL1
COPS4
CLDN4
CYB561
GTF2H2
RHPN1
TBC1D30
GNS
SLC35B1
CMTM5
CBX1
CARM1
MAT2A
BBS1
MAZ
LOC100421372
HSPA14
CDNF
SLC24A1
ZNHIT1
PLOD3
MAPK1IP1L
MBNL2
GMFB
SGTA
SEPTIN9
MTCH1
ITGB1
RTBDN
ZC3H15
VEZT
FGD6
PDLIM7
LEO1
SRFBP1
TJP3
CPPED1
TINAGL1
PTDSS1
MTERF3
RBM39
ANKRD39
KCTD5
RMND1
ARMT1
CCN1
CHD6
MRPS23
FLYWCH1
RGR
ZNF56
SERPINA3
TBXAS1
TOMM20L
ZNF572
MIA
GTPBP10
MALSU1
OSGIN2
FBXW7
GRHL2
PPP5D1
CALM3
PACSIN2
LTA4H
RBBP6
DCP1A
PHLDA1
TPD52L1
TBX2
ADGRL1
EXD2
ATXN7L2
SCRIB
NDUFV1
RIPK2
GLIPR1L2
RNF103-CHMP3
RMND5A
DDX41
PLEKHF2
DCAF10
WDR87
SIPA1L3
ERICH6
YIPF2
TIMM29
CHAMP1
LYSMD2
ACTR10
FKBP5
BCAS4
CDK13
RRM2B
MIDEAS
PRSS54
MOCOS
SLX1B
SLX1A
BOLA2B
BOLA2
ATAD2
BOLA2-SMG1P6
RBM48
PEX1
ZC3H6
PIK3C2B
OR2A1
RAF1
ATP5F1E
TMEM60
PHTF2
SND1
SQLE
ARPP19
LRP12
APOD
GDPD1
SLC27A2
NEMF
RPL7L1
ZFAND3
NREP
ADCK5
UBFD1
EARS2
EEPD1
TMUB2
PNN
METTL9
EEA1
EEF2K
HAPLN1
PAMR1
TARS2
ARID1A
COX16
DHRS13
SNAPC3
PCBP2
RAPGEF4
GNB5
CROT
GOLGA5
MINDY1
CENPN
HPS6
HEBP2
CTDP1
YOD1
PFKFB2
LRRC10B
NPAS4
NDUFAF6
ARHGAP18
WIPI1
ELAPOR2
ATP6V0C
METTL25
CCDC59
FAM228B
SF3B6
ANKRD36
VEPH1
NUP107
RPS29
MRPS18C
HELQ
SAP30BP
RECQL5
TSPAN17
ZNF410
ATXN2L
SLC37A4
UIMC1
DPP9
NBN
EEF1AKNMT
ZNF764
MEMO1
NFATC2
FBXO34
PKD1
ASAP2
ZMYM5
HBP1
SUPT4H1
TBC1D19
SF3B2
POP7
ZCCHC8
AZIN1
CDHR3
B4GALT7
SNX17
EIF2B4
RAB30
ARHGEF19
AMZ2
DNAH2
CFL1
TMEM150A
TMEM144
MBTPS1
XRRA1
SPCS2
USP30
LMCD1
GOLM2
PCMTD1
WWP2
YTHDC1
RBM25
PTGR2
LSG1
CYP51A1
KPNB1
ESRP1
SMAD5
GTPBP3
CDKN2D
WDR24
SPPL2A
ANO8
IQCH
AAGAB
GAS2L3
MCMBP
SRSF1
DDX59
TOP1
PRELID3B
ITGA6
DENR
UBC
SLC39A13
ARFGEF2
TEDC1
RABGAP1L
AMN1
TBC1D5
DUSP23
ELL
ATG16L2
PRRC2B
INO80C
MAPK14
POLD1
SAR1A
KIAA0232
ATP5MPL
GFRA1
KIAA2012
PLPP2
SELENOH
RWDD1
CHCHD3
KIF22
FGFBP3
ZHX1-C8orf76
ZHX1
RPIA
CCDC57
VAX1
SLC2A12
SLC25A11
RNF167
PON2
KMT2D
FUT1
HIP1
APC
LRWD1
ALKBH4
PRELP
TOM1L1
NBPF11
GOT1
FRA10AC1
NOP14
GRK4
ADRM1
ADAM22
TNPO1
RNF44
CYP21A2
LHX9
SLX4IP
RTF2
SPHK2
RPL18
TUBGCP3
FBXL19
CSRNP2
LCE1D
GPR22
STAG1
SLC25A40
DBF4
LARS2
GHR
MAP3K9
SNRNP70
ERGIC1
IMPA2
TFAP2C
SPATC1L
TRIP4
MRPL45
B3GLCT
CALB1
LARP1B
NDST2
PDE8A
TMEM41A
CPSF1
CCDC88A
DERL1
C10orf95
NUF2
CNPY3
CCNC
TK1
AFMID
NOTCH2
SCNM1
LYSMD1
PROSER1
NHLRC3
FUT8
RIMS1
SLC25A25
NAIF1
PSMF1
CLPB
ZNF148
KIAA1586
SIKE1
DDX5
SYAP1
DDX1
ACOT4
KLHL12
PPP1R11
MRPL38
PRMT3
RP9
RNF141
LTO1
KNTC1
LOC100289561
LARGE2
ISOC1
MYO5A
MTBP
MRPL13
ADPGK
TMCC3
ADNP
GGCX
ZMYND8
DNM1L
NAA80
HYAL3
RFLNB
PLEKHG1
TMEM243
ITGB3BP
EFCAB7
LNPEP
PHAX
BICD1
SMG5
MRNIP
ZNF786
CCNG1
ZCCHC14
GAS8
MYSM1
DBNDD1
VANGL1
SYCP2
KLK10
PDIA4
SH2B1
LATS2
INTS4
ARNT
HTRA2
CUEDC2
ATG7
FAM214A
TERF2IP
KARS1
ZNF862
PSMD5
INTS1
FAM3C
ZFYVE26
DICER1
FYN
MEF2A
TMEM127
CIAO1
NCBP3
PCCB
MAN2A2
NRAS
LUC7L
SCG3
CA5B
STXBP3
DSCC1
RPS16
ADPRHL1
PDSS2
FAM13A
RPN1
ARHGEF11
CDK12
PKM
MTIF2
PPM1K
SPAST
EXOSC4
TAOK2
USP20
C9orf78
IQSEC3
RUNDC3B
KEAP1
PPP2R2A
GTF2H2C_2
GTF2H2C
NARF
MRPL16
KMT2B
TNFRSF21
PCLO
RIPOR3
DDX3X
PPFIA2
ZNF18
WWC2
ZFAND4
POLR1F
PRPF18
RAG1
INTS2
CLP1
TMEM30B
CNKSR3
NPIPB6
CRBN
PSMD3
BRIX1
DYNC1H1
GSPT1
ZNF706
DHTKD1
PHACTR3
SAYSD1
PCTP
TUBD1
RPS6KB1
TSEN2
UBAP1L
H2AZ2
MRPL42
OARD1
NFYA
PA2G4
DCXR
PUS7L
IRAK4
AVPI1
SMPD3
MTRES1
PPP1R3E
OXR1
CBX5
GPR137
BAD
GTF3C3
RTRAF
ZNF276
VPS9D1
PTK6
SCO1
ADPRM
TRIM9
VGF
ABL1
MINPP1
RAB32
SLBP
C2orf42
H2BC12
H2AC12
TRMT61B
GTF3C5
NUFIP2
CSTF1
AURKA
ATP6V0A2
CUL7
MPZL2
DTD2
GOLGA3
WWC1
FA2H
TMEM52
CPQ
ARHGEF5
SEC13
ATR
UBQLN4
LAMTOR2
MTDH
CHMP7
SULF2
TBCD
HAX1
TATDN1
NDUFB9
YJU2
TOMM40
BNIP1
ZSCAN25
NOLC1
ASB6
LOC100287896
LIPT2
SLC25A36
ZNF668
ZNF646
SNRPD1
IL13RA1
PAX9
CFDP1
ANGEL1
RELT
FAM177A1
TIMM9
KIAA0586
VPS28
MRPS7
GGA3
MKS1
C6orf132
TMOD3
SIX2
TRAF3IP2
LMO3
GOLGA6B
LRATD2
FBXO33
TEFM
PLPPR1
CFAP410
TNKS
RAB5A
EFHB
RAD23B
ALDOA
SETDB2-PHF11
SETDB2
CAB39L
PLOD2
TUFM
FGF9
ANKRD36C
GPHN
PRKAB1
SENP1
PFKM
CEP70
LYPD1
NDUFS7
FAM133B
ZSCAN2
THAP5
DNAJB9
YDJC
TPBGL
WARS2
STK3
FLOT1
EGLN2
BCAR1
MAF1
LRCH4
FBXO24
NUDT16
SNAP47
JMJD4
ZGPAT
ARFRP1
PTPN1
WDR59
SLC66A3
CLDN3
PGC
NR1H3
ACP2
TPRN
ZNF273
RMDN2
PPIA
TECPR1
EMD
PPM1H
PHKG2
RIOX1
ZNF879
ZNF468
NFKBIA
TMEM129
TACC3
PSMB10
UCHL5
RO60
POC5
ZNF644
MRPL1
IPO4
CD58
CMTR2
SNX19
COQ8B
HS1BP3
ATRN
MAGIX
RBBP9
WDR38
C1QBP
PMVK
CBWD5
CBWD3
CBWD6
TDP2
ACOT13