ChIP-Atlas: Target genes

Potential target genes for SOX9

Query protein: SOX9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX4065345 | hESC derived retinal cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SOX9's Target genes

◢ SOX9: Average

◢ SRX718108: hESC derived pancreatic cells

◢ SRX4065343: hESC derived retinal cells

◢ SRX4065344: hESC derived retinal cells

◣ SRX4065345: hESC derived retinal cells

◢ SRX4065346: hESC derived retinal cells

◢ SRX4065347: hESC derived retinal cells

◢ SRX4065348: hESC derived retinal cells

◢ SRX11220467: HT-29

◢ SRX11220468: HT-29

◢ SRX768290: HT-29

◢ SRX11416753: KARPAS-422

◢ SRX11856133: LNCAP

◢ SRX11856134: LNCAP

◢ SRX11856137: LNCAP

◢ SRX11856138: LNCAP

◢ SRX11856139: LNCAP

◢ SRX11856140: LNCAP

◢ SRX11856141: LNCAP

◢ SRX11856142: LNCAP

◢ SRX359919: LoVo

◢ SRX10175282: PANC-1

◢ SRX10175283: PANC-1

◢ SRX1510444: VCaP

◢ SOX9: STRING

SNX16
HBB
FAM72C
FAM72A
MTRNR2L2
MTRNR2L8
DOLPP1
PRKACA
ARRDC4
MEIS1
HMGCS1
FAM72D
HRK
KHSRP
MAF1
ZNF775
RRM2
FBXO5
ARHGAP19
FAM72B
HLTF
FDFT1
SLC24A4
SLC35E2B
TINAGL1
SLC35E2A
POR
C2CD4D
SNAP29
PI4KA
RGPD2
RGPD1
TAF15
GPSM3
POLG
PARK7
NOXO1
SH3KBP1
IQCH
AAGAB
PDXDC1
PRKCI
WDR74
PPDPF
KLK6
PPIB
CDC25C
PGBD4
EMC7
FAM53C
NOP56
OGA
PRDX2
CDYL
ANKRD13A
PHRF1
EIF3B
MTF2
PFDN4
CNOT6
RHBDD3
EWSR1
PTDSS1
MTERF3
PIK3R3
FRAT2
AKIRIN1
LSR
EED
ATG101
RNF13
PCDH1
SLC35A5
ATG3
DLST
MYO9B
HAUS8
GNB2
MTRNR2L9
ATG16L2
PRR19
PAFAH1B3
MRPS24
YY1AP1
DAP3
NDST2
COMMD6
KCNH8
LAMB3
PTOV1
CDCA7L
BCL6
USP15
UCHL3
SLBP
ACSS1
CENPN
UIMC1
FOS
PMVK
TSPAN4
POLR2L
BZW2
ANKMY2
WASL
UBE2C
UROS
BCCIP
FUS
DNMT1
CDON
FLCN
TMEM160
DBP
PAXIP1
UNKL
STK35
ETNK1
PRKDC
MCM4
FRAT1
MBLAC1
STIP1
ZNF219
DNAAF3
KAT7
SETD5
RASSF7
LMNTD2
C21orf91
RBM7
C11orf71
NOL8
CENPP
UBE2B
CDKL3
LIN54
SELENOW
RPL35
ARPC5L
PSIP1
PDE8A
PROSER3
HSPB6
SHKBP1
MRPS11
MRPL46
SPTBN1
TIGD5
EEF1D
MYL12B
XRRA1
SPCS2
FRMD5
PIP4K2B
ZNF335
MYH14
UFSP2
DGAT2
SLC5A1
SPATC1L
CIC
MTBP
MRPL13
PLEKHG4
PRDM10
MYL12A
TARDBP
HHIPL1
CCDC85C
C6orf226
ZNF8
HNRNPL
METTL25
CCDC59
RNASEK
UBA1
PPP5D1
CALM3
SYVN1
TTLL7
ARNTL
CCNL2
FAM83D
FANCI
CDIPT
TOP2A
PSMD14
PNN
OXR1
ATP6V0C
ZFAND3
ZNHIT1
PLOD3
RPL22
HDAC2
TP53BP2
RPN2
MROH8
RRBP1
ITGA6
PRCP
DDIAS
PPP1R13L
UQCRQ
GDF9
PRR3
GNL1
ADAP1
DPP9
WRAP53
TP53
LUC7L2
TEPSIN
NDUFAF8
STX16
SLC25A42
TBC1D17
AKT1S1
TANGO2
ARVCF
MSANTD4
SS18
RNF103-CHMP3
RMND5A
DISP3
RAB4B
CNOT1
TMEM45A
UQCRC2
ANKRD12
ALKBH7
NOCT
CENPE
RPL19
WASHC5
NSMCE2
TCP11L2
RMND5B
CNOT3
HDAC1
THOC1
CYP2R1
CFDP1
NUCB2
MRPS31
USP3
ACAP2
NFYC
ABTB2
PGP
DOHH
SRI
ZMYM2
SP2
UBE2A
NDUFB1
CPSF2
AP2A1
NR6A1
STK32C
LRRC27
NCDN
KIAA0319L
TMPRSS3
MYT1
NWD1
LANCL2
MAT2A
PTP4A2
ANP32A
TMEM260
RBM39
ATP8A1
GTF2IRD2
HNRNPA1
CBX5
ZNF609
UFD1
FMC1-LUC7L2
FMC1
CDC45
SSBP1
ARAF
SOD2
ZNF519
POLR1G
SMC3
HMGB1
PIF1
FOSL1
MIA3
LEMD2
C2orf42
PPP6R1
ATP5PD
SLX1B
SLX1A
BOLA2B
BOLA2
USPL1
SSNA1
FGFR4
ANAPC2
STXBP3
MIA2
ANKRD39
FMN1
ZNF300
TRAF2
OGDH
ZFAND4
TUBB4B
ATP5MC1
ATAD2
PELATON
TLE3
GTF2IRD2B
SERTAD1
SELENOH
ZMYM5
HNRNPUL1
HECTD2
PRKAG2
BAZ1B
RASEF
SKA2
PRR11
CD164
KIF1B
ATF7-NPFF
ATF7
PCLAF
UTP23
CSNK2A1
ZNF572
TMEM168
VBP1
RBM42
LEPROT
LEPR
GGNBP2
RAB33B
AK2
LRCH4
FBXO24
ECPAS
PELI1
OSBPL2
ATP5F1B
SMARCD2
FAM227A
CBY1
CCT5
ATPSCKMT
PANK2
MADD
FAM227B
DTWD1
RABGEF1
UTP18
MBTD1
ARHGEF38
ISOC2
E2F6
KCNAB2
MGRN1
BOLA2-SMG1P6
PMF1-BGLAP
PMF1
SMARCAL1
KATNB1
TRIP4
ZNF687
NUF2
INAVA
RTKN
OPA3
EIF2D
ASH1L
GIPC1
FAM110A
COPS5
HDGFL2
CDK16
ZCCHC4
NLK
COQ8A
KCTD7
PAIP2B
TMEM218
EFR3A
ZNF574
TES
RNF6
H3C15
H3C14
ANKHD1-EIF4EBP3
ANKHD1
LRPPRC
CCDC200
KMT5C
H3C6
MRPL21
IGHMBP2
EFNB2
PLPP2
MOCS3
DPM1
SREK1IP1
PDK2
CWC27
H2AZ2
PLAG1
CHCHD7
MRPL45
LRATD2
NOTCH2NLC
WDR62
THAP8
CKAP5
PTCD3
POLR1A
NOTCH2NLB
NOTCH2NLA
TFPT
PRPF31
OSBP
HOMEZ
POLR2J3
GGCT
CBWD5
PPFIA3
C19orf73
ALDH4A1
PRRC2B
ABCB8
ITGB3BP
EFCAB7
NECTIN3
H4C14
TMTC4
CFAP77
EIF2AK3
SF3A3
COA1
FSIP1
TTBK2
KANSL3
LRRC61
ACTR3C
ECHDC2
MTCH1
SRXN1
IVD
KANSL1
DOT1L
ADPGK
TADA3
ARPC4-TTLL3
ARPC4
KLF5
MPHOSPH8
CANX
STX18
NUP107
FAM228B
WDR45
CBWD3
RAB28
TPBG
HBP1
ATP5IF1
LSG1
HNRNPC
ANLN
PRMT1
DIAPH1
CWC25
TMEM209
RAB7A
C7orf57
CENPA
RLN2
PLEKHG5
CALR
CALU
NDUFS3
KBTBD4
EIF3F
DNAJC14
KLF6
SEPTIN9
TMEM242
PTCD2
MRPS27
DIAPH3
CDK5RAP2
RB1
YJU2
PPWD1
MZT1
KANSL2
IFT52
FANCF
CENPK
BORA
MTMR14
HYAL2
GTF2H2
ABHD2
ZNF484
RBM27
ZSWIM1
AAR2
SLC24A1
CNPY3
PRR14
SUPT20H
USP31
FCHSD2
CHCHD6
PAK4
PRDX1
SPRYD3
FRMD6
GATAD2B
FBXO33
ZSCAN22
PKNOX1
COPS7B
TYK2
NPL
RAVER1
RBM28
PSPH
CCT6A
POLR3B
ZNF862
SCAND1
MED23
LDHA
RUVBL1
NF2
CEP63
ANAPC13
H4C15
TOM1
SH3TC2
HIBADH
PLXNA3
MRPL40
HIRA
TMEM39A
HGS
DENR
ARL16
SIRT2
NFKBIB
PAQR4
CEP164
RUVBL2
GYS1
FOXA2
CAPS2
NAT10
SUPT4H1
AFF1
ETV6
ATP5F1E
HSCB
CHEK2
MTMR12
GTF2H2C
GTF2H2C_2
COMMD2
ANKRD17
SNX17
PDIA4
EIF2B4
ZSWIM4
SLC46A3
LMTK2
HEXA
FAAP24
CEP89
DAZAP2
RMI1
OTUD7B
INTS12
HNRNPK
GSTCD
DGCR8
ZNF77
SPATA17
GPATCH2
G3BP1
ZNF564
BCAS3
H4C12
CUL2
NDUFS7
ANKZF1
RLN1
CCNB2
UQCRH
MAOA
LRRC41
GOT1
GALK2
COPS2
UNG
RBM48
PEX1
LAMP1
CCDC102A
SIGMAR1
RPS19
NOL7
MRPL44
ACAT2
SHOC2
BBIP1
ACTN1
F11R
WDR36
SRPK2
RPS29
RITA1
DDX54
ALKBH3
BICD2
NARF
DCUN1D4
SPTLC2
SPATA5L1
GATM
PXMP4
TATDN1
NDUFB9
LENG1
GBA
TTC26
DPY19L4
STAT1
DRAP1
C11orf68
MRPS23
RWDD1
H2AC19
H2AC18
ENSA
SKA3
MRPL57
JPT2
ZNF143
PABPN1
H2BC12
H2AC12
WDR11
SLX4IP
RBBP6
LYRM1
DCUN1D3
SP1
SDHAF1
PGBD2
CBWD6
RFX1
RNF139
PRKCZ
YIF1A
EIF1AD
BANF1
MAP1LC3B
FBXO31
ARHGEF5
TBL3
WDR61
SPSB3
SC5D
OBP2B
NUBP2
METTL3
GPR108
FAM98B
PPP4R3B
GFM2
ERCC5
TARS1
CDKN3
TESK2
CCDC77
COMMD9
ARL14EP
HMGCR
STRIP1
HACD2
ZBTB3
GTF3C3
RCL1
ISG20
ENPP5
FRA10AC1
FASN
TNRC6B
TCERG1
SLC44A1
CPSF4L
UGP2
TMEM65
MCM10
DNM2
USP1
SETDB2-PHF11
SETDB2
CCDC12
CAB39L
TBC1D10B
PEX3
MYLPF
ADAT2
CDCA3
KMT2E
DUT
ZDHHC5
SAP30L
NLE1
RBBP5
P4HB
AP2B1
GOLGB1
GARS1
CDK12
ZNF138
RRP15
RPS7
FZD1
SASH1
TUT1
TSR3
TPST1
SPAG7
GNPTG
ZNF92
TDRD7
UBE2I
MTIF2
ZNF212
CLDN3
MRM3
GLOD4
TMEM222
TTC23L
GET3
SIPA1L2
RTTN
ITGA2
HSPA5
ARHGEF7
SFXN5
FAM20B
TMEM94
CCNI
NDUFB2
MED30
SPNS1
GATAD2A
RECQL
GOLT1B
ZBTB45
VDR
TIMM50
PTMA
LMO7
ZNF165
SLC35B4
RAB5B
EFNA4
CXorf56
RPL37
PPP2R5A
USP48
RPL13A
ZNF830
HAGH
FAHD1
CCT6B
VPS26B
NCAPD3
GSN
SORT1
IMMP1L
ELP4
WDR93
TTC30B
TOMM40
PEX11A
FAM133B
EIF4A1
C1orf174
AMACR
PLEKHM3
MBD4
IFT122
CXXC1
TRAPPC9
NOL11
HSP90B1
HSD17B12
FLAD1
ZNF180
XKR8
TRMT2A
RANBP1
PGAP2
MAN1A2
CLTC
SRM
LRRC6
DNAJA4
MAN2C1
ZSWIM3
SSR3
ACOT8
SUPT7L
SLC4A1AP
DYNLL1
TMEM183A
TMCC3
RAD21
HNRNPA2B1
CBX3
RPS6
AHCYL2
ZMPSTE24
STAT3
GCA
FAM126A
ERCC6L2
ACTL6A
OTULIN
HNRNPAB
TRIB1
MRPS15
CLN5
WDR70
SMC4
PDE4DIP
NAGPA
MRPS35
IFT80
DSTYK
TPRN
CCDC174
PRKCSH
CCDC151
TATDN3
SECISBP2
NSL1
RAB40C
RAB40B
ETV4
ALG10B
MAST4
SLC3A2
MRPS33
MIA
OPA1
EHD4
STYXL1
PPP6R3
NUP42
MDH2
CDT1
ING1
ATL3
VIRMA
MTERF4
MAMSTR
EHBP1
ZNF770
C8orf76
SUPT5H
NAGK
PSMC4
COG2
WDPCP
TRMO
MDH1
SECISBP2L
TSPAN31
RPS20
LAPTM4A
ZSCAN25
ZNF576
IRGQ
SPHK2
RPL5
ORC5
H3C3
MORN4
NUDT16
CYTH2
TXNDC15
SLC25A38
RPL18
PPM1D
ZNF672
ZNF175
RHPN1
GOLPH3L
NCOA5
GSTO2
CYP4F11
DDX41
USP30
TMEM248
SPTLC1
MCIDAS
KAT6B
AKT2
RPS13
PACSIN2
FKBP3
EGR2
TOM1L2
DRC3
UBN1
GLYR1
PPIC
BCL2L1
ANAPC5
RGS3
PBLD
NUDT2
KIF24
HNRNPH3
WASHC2C
SYS1
STEAP2
MTERF1
IMP3
FAM156A
VPS50
MAPK14
HEPACAM2
ATAD3B
RPS3A
TRAFD1
SRSF7
SLMAP
PTPN13
TDRKH
GTF2H3
EIF2B1
PSMA7
NUDCD3
POLR2G
MICU2
STT3A
SRP14
SEC31A
MRPL30
MITD1
LGR6
ECT2
DDX1
CFAP20
CCNL1
RALY
KRT8
ERCC1
PLS1
GSK3B
TRIAP1
SIRT4
CDK5RAP1
GRIPAP1
ZNF777
RNF135
MYH9
RCN2
QTRT2
HINT2
DYRK1B
CCDC191
GLCCI1
LAMTOR5
ZNF273
TMEM60
RPL6
PTPN11
PHTF2
TMEM199
POLDIP2
HEXIM1
ENPP4
CLIC5
SF3B6