ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX118692 | mESC derived neural cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◣ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Cldn34d
Adgra2
Hivep3
Tmem181a
Adgre5
Notch4
Fubp3
Xylb
Tomm5
Olfr806
Cdx1
Socs3
Mafa
Oxnad1
Dph3
Mreg
Abhd6
Tcp11
Ints3
Mkrn1
Slc6a16
Cd37
Ect2
Gpx4
Zdhhc18
Aqp3
Hoxb13
Ncmap
Wwox
Cidea
Slc43a1
Itga5
Brwd1
Gabarapl2
Kcnk5
Nphs1
Mobp
Aadacl2fm1
Tm7sf3
Hrob
Gstp2
Cdk15
Fbxo6
Thrsp
Pmepa1
Ifitm7
Bmerb1
Ksr1
Nkg7
Lim2
Pidd1
Slc25a22
Slc7a15
Baz1b
Capns1
Rusc1
Prdm14
Spc25
G6pc2
Sec31b
Tmem63c
Mtg2
Vmn2r102
Ube2o
Hoxa1
Ttpal
Kpna1
Enpp4
Dcaf4
Icam1
Cic
Gtpbp4
Bcar1
Dppa2
Gpcpd1
Grtp1
Rarg
Calr
Mmgt2
Lrrc75a
Slc15a1
Efnb3
Tmem191c
Agrp
Atp2a2
Zfp532
Insyn1
Kazn
Rbks
Babam2
Cyp26a1
Pdgfrb
Abl1
Impa1
Mis18bp1
Nodal
Abr
Megf8
Mtf2
Psmb7
Ankrd44
Ttll3
Ppp3ca
Zfyve28
Cfap99
Plekhb1
Slc4a1
S1pr2
Brsk1
Mok
Mib2
Spred2
Galnt2
H2-Bl
Ccdc80
Kat7
Dusp9
Resf1
Tmco2
Gm973
Rreb1
Trim7
Nme1
Csf2ra
Hbegf
Ino80c
Trmt1
Plxdc1
Letmd1
Rhox11
Zfp827
Prmt8
Dedd
Pbld2
Hnrnph3
Serpinf2
Megf11
Pdlim1
Hspb8
Znrf1
Krt79
Ryr1
Atg14
Acp6
Col9a2
Camk1
Prdx6
H2ap
H2al3
Smim38
Pik3ip1
Vars
D17H6S56E-5
Bmt2
Kank3
Il3ra
Znfx1
Ppdpf
Pspn
Alkbh7
Evi5
Fam131c
Capn3
Usp28
Crtap
Gm7244
Nek2
Capza2
Nudt4
Slc22a21
Sec22c
Trim17
H3f4
Ankrd45
Amacr
Rusc2
Ppp1r15b
C1qa
Ago2
Tyrobp
Tent5c
Itpk1
Phc1
Msh6
Rnf19b
Drd4
Gm867
Chchd10
Fxn
Fam160b1
Ankrd28
Gipc1
Ccdc102a
Adgrg5
Aebp2
Bcl2a1d
Cpt1a
Cfl2
Tnnt1
Ilrun
Phf5a
Aco2
Epp13
Dpp4
Acp5
Rnf13
Nsd1
Ghdc
Scyl1
1810020O05Rik
Zfp316
Tmem116
Erp29
Lipe
Rxrb
Col11a2
Nupr1l
4921517D22Rik
Rfc5
Zfp438
Zyg11a
Sgk1
Best3
Oasl1
Men1
Eras
Gabbr1
Stk35
1810010H24Rik
Vwa8
Kcnk4
Slc29a1
Mymx
Rnf213
Tmem64
Gm3558
Fam166c
Zfp143
Pyroxd1
Misp3
Agpat2
Cdsn
Slc25a36
Tmem184b
Trim56
Ank1
Rfx2
Shisa5
Hspb7
Clcnkb
Crlf2
Gipc2
Bcl2a1a
Rnf169
Mllt6
Lman1
Muc1
Agpat3
Il31ra
Zfp523
Gpr20
Map1b
Septin4
Ubxn2a
Sema4g
Fam171b
Ptgir
Dag1
Ttc24
Iqgap3
Usp45
Tstd3
St6galnac6
Erich3
Ctsd
Rasl10b
Dcp2
Colca2
Stat4
Crybb1
Cryba4
Vmn2r22
Arhgap19
Ggt6
Nfyb
Jarid2
Zfp979
Irf5
Bcl11b
Spint4
Smarca5
Cfap161
Rarb
Rnf125
Hoxc4
Uqcrc1
Sycp3
Arih2
Kng2
Wsb2
Rgl2
Foxp1
Arf4
Cacng6
Zfp600
Smyd4
Rpa1
Fbxo46
Bhmg1
Trpv3
Adora2a
Arfgef2
Gcgr
Spata33
Chmp1a
Dlgap3
Slc12a7
Gca
H2-Q8
H2-Q6
Dock6
Slc25a13
Bcl2a1b
Ssc4d
Ckb
Uck1
Pcmtd1
Slc14a2
Sbno2
Slx1b
Bola2
Ncapd2
Mrpl51
Gm3696
Uba3
Arl6ip5
Sin3a
Gabpa
Atp5j
Taf13
Pitpnc1
Pbx2
Gpsm3
Tsc22d4
Ager
H2-Q9
H2-Q7
Prss52
Ankrd39
Tdgf1
Lrrc2
Gm45915
Lrmp
Fkbp14
Fbxo17
Ptpmt1
Ammecr1l
Ceacam16
Stra8
Zswim1
Spata25
Spire2
Dhx32
Osbpl1a
Rnaseh1
Heyl
Myo1b
Slamf8
Lyg2
Nr6a1
Mrs2
Abcc5
Fbxo15
Pdcl3
Sirt3
Psmd13
Ap3s2
Trim26
Gpa33
Dusp27
Zdbf2
Abcg4
P2rx1
Shld1
Gm3411
Lgals2
Gcnt2
Cystm1
Tafa4
Ggact
Mrpl37
Cyb5rl
Krcc1
Foxa1
Sub1
Zfp280b
Jmy
Nat8f2
Adamts15
Tefm
Zfp710
Etnk2
Hck
Ndufs8
Ppp2r5e
Extl1
Adnp
Zfp980
Tspan9
Smim20
Slc28a1
Cln8
Pcnt
2310009B15Rik
Rita1
Ddx54
Tmem60
Phtf2
Erf
Rara
Zfp985
Mbd6
Ddit3
Tfrc
U2surp
Ptcd3
Polr1a
Ifna13
Hps5
Gtf2h1
Rpgrip1
Dhcr24
Cyb5r4
Dennd10
Sall2
Tmem205
Ccdc159
Dppa5a
Taf4
Agtrap
B230307C23Rik
Ado
Tmem135
Slc25a51
Map7
Phrf1
Nup205
Fzd5
Phf11d
Atp5e
Abhd17c
Ppm1b
Trem2
Tmeff1
Bik
Gm12169
Sspn
Chd9
Grin1
BC031181
Rpl17
Phldb3
Mbd3
Ttc25
Jam2
Srrm1
Tomm40
Cfap20dc
Ndufa2
Ik
Fam205a1
Upp1
Bcan
Ltn1
Eif4ebp2
Pgbd5
Prrt3
Gdf1
Cers1
Guf1
Actn4
Tmem235
Crybg2
Ccdc88b
Meiob
Nfatc2ip
Ldc1
Ier2
Ush1g
Otop2
Tnfrsf19
Tmem79
Smg5
Rbpj
Alpl
Siah3
Sema5b
Glis2
Fam25c
Fam81a
Apobec2
Sstr3
Smarcd1
Tbcel
Fam32a
Copz1
Sugt1
D830030K20Rik
Hmgcl
Lama3
Pld3
2310022A10Rik
Chpt1
Aldoart2
Slc38a4
Ptch2
Plet1
Nr1h5
Lrrk2
I830077J02Rik
Itpr1
Dnmt3a
Myl4
Cdc27
Mcrs1
Hpse
Rai1
Spag9
Yap1
Mlst8
Cldn14
Dnase2b
Ubap1
Kifc3
Timm8b
Sdhd
Foxn4
Zfp819
Gipc3
Pigr
BC028528
Aph1a
Plk3
Tfr2
Lyrm1
Dcun1d3
Spaca6
Timp3
Prr5
Homer3
Sema4d
Mdfi
Rbp7
Agrn
Pacsin2
Stub1
Rhbdl1
Jmjd8
Kat6b
Sik3
Pafah1b2
Ppp2r2d
Mapk1ip1
Elf1
Zfp605
Gtpbp6
Ttk
Porcn
Stard6
4930503L19Rik
Acmsd
Ppp5c
Golga7b
Hsh2d
Cox17
Maats1
Tecr
Spp1
Pde6a
Tln1
Creb3
Zswim8
Haus1
Atp5a1
Chchd1
Dab2ip
Rnf130
Kcnip3
Bmp1
Eva1a
Skil
Cdc42bpg
Folr1
St6galnac2
Gja1
Ggnbp1
Bak1
Ppp1ccb
Bcl2l2
Ppp1r3e
Lrfn1
Mgat3
Smim40
As3mt
Tvp23b
Plcb3
Ppp1r14b
Tlx2
Tsc22d1
Pbk
Smpd4
A930018P22Rik
Smarcc2
Ap5s1
St6gal1
Sall4
Gyg
Rap1gap
Tmem200b
Myh14
Aven
Gna12
Lgals9
Sntb2
Phactr3
Cobl
BC052040
Hpse2
Dchs1
Arl15
Tmem39a
Tead4
Sgf29
Nanog
Ccdc113
Srcap
Ms4a14
Fignl1
Def6
Tlcd1
8030462N17Rik
Nek8
Ogdh
BC048403
Cryzl2
Sec1
Smc3
Sdha
Ccdc127
Brap
Acad10
Aurkc
Adam19
Nfe2
Rmnd5b
Smg7
Hrh2
Cog6
Gch1
Ppfibp2
Wnt8a
Npm3
Scg5
Agap1
Fgf8
Rgs5
Ebf4
Trib3
Ctr9
H3c3
H2bc3
H1f2
Hagh
Fahd1
Bahcc1
Cacnb3
Camk1d
Nudt1
N4bp1
Slc7a7
Zfp526
Dedd2
Sv2c
Stag3
Gpc2
Tmem171
Mansc4
Tlr5
Mybl2
Mdk
Hexb
Cemip2
Arhgap27
Zc3h3
Rhot1
Pou5f1
Dnaaf3
Gde1
Tnfrsf13c
Zfp407
B3glct
Coro1b
Ptprcap
Etfa
Shh
Rprd1a
Car3
Gfod1
Tmprss6
Tuft1
Tbx4
Atg4d
Fam120a
Spry2
Ptk7
Acad12
Fgf4
Slc25a39
Ubr3
Zfp770
Smad6
Mdm4
Nedd4
Rab20
Pdk1
Rap1b
Rab8a
Ddah1
Gemin7
Wdr82
Rcc1l
Arhgef26
Nptx2
Ice2
Eif4ebp1
Lekr1
Smim24
Gm48552
Ptprz1
Tfap2c
H4c8
H2ac10
Eapp
Tex14
Fbxw7
Akirin2
Tmem125
Esr1
H4c3
H1f6
Tmem33
Fam227b
Dtwd1
Nemf
H3c7
Rps29
H4c2
Trim29
Hmox2
Ilf2
BC107364
Clcn4
H3c6
H4c4
H2bc6
Olfr180
H3c2
H3f3b
Rdm1
Rasip1
Slc35g3
Polr2a
Izumo1
H2bc9
H4c1
H3c11
H2bc22
H2ac22
Mycn
Klf2
Ier5
H4bc24
H2bc23
H2ac24
H2ac23
H3c8
Taf12
H4c18
Rhobtb1
H1f5
A930033H14Rik
Adam5
Poldip3
Hspa5
P4ha3
H4c11
H3c15
H3c14
H2ac19
H2ac18
H4f16
H2aj
Dchs2
Cyth4
Vgll2
Gnb5
Ing1
Jund
Iqcn
H2ac4
Mettl14
Malt1
Prkdc
Fam24b
Nabp1
H4c9
H2bc11
H2ac11
Gm20594
Cd44
Srsf3
H2bc21
H2ac21
H2ac20
Tmigd1
H3c13
H2bc18
H2bc4
H2ac6
H3c1
H1f1
Sfi1
Dlg4
H2ax
Gja4
Fam53c
H4c17
H4c6
H4c12
H2bc15
H2ac15
H2bc12
H2ac12
Foxo3
Gtf2a1
Ccin
C1qbp
Arrdc2
H1f4
Gm3448
Gm3417
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Rgs18
Klf4
Hnrnpab
Rsrp1
H3c10
H2bc14
H2bc13
H2ac13
Btg2
Ubb
Sumo1
Mphosph9
2810006K23Rik
Lrch4
Fbxo24
Asph
Hspa8
Fbxo31
Rrn3
Scn8a
Zbtb37
Gm3435
Creb3l3
Tob1
9030025P20Rik
Ints6
Cited2
Cbr3
Rnd3
Junb
Tbc1d10b
Mylpf
Ranbp3l
Sacm1l
Pcx
Acsl4
Yars2
Calm2
Hexim1
Slc9a1
Rpl3
Stk3
Tpm2
Ttf1
Agbl5
Rab7
Trim41
Taar7a
Olfr646
Stap2
Mpnd
Sde2
Nufip2
Dcpp1
Fus
Pnp
Mybpc3
Utp14b
Acsl3
Hsp90aa1
Spg20
Rnaset2b
Srsf5
Eif2s3y
Insig1
Rnaset2a
Csrnp2
Cbx4
Ppp1r10
Mrps18b
Rps12
Dnajb9
Ccn4
Fut8
Sumf1
Npbwr1
Sirt4
4921539E11Rik
Ddit4
Klf6
Zfp36l1
Sbk2
Calm1
Rbm14
Gm21992
Gpx1
Rnf103
H4c14
Cltc
Gtf2a1l
Gtf2b
Ctsl
D230025D16Rik
Tro
Nop58
Hsp90ab1
H2-DMa
Brd2
Trim40
Raf1
Ndufs7
Aplp2
Atp1a1
Ndufa6
Gm648
Jpt1
Mpp7
Gadd45a
Dpysl3
H1f3
Prdx1
Actb
Gapdh
Eif4g2
Dgat2
AU018091
Clu
Mat2a
Tubb4b
Tcte3
Ermard
BC005537
Ubr4
Id3
Cyfip2
Kmt5b
Errfi1
Srsf2
Mfsd11
Sf3b1
Eif4a1
Mknk2
Pcna
Dusp1
Tmem107
Arl4d
P4ha1
Ctnna3
Gucy1a2
Mcl1
Dhx9
Wsb1
Sema4b
Arrdc3