ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3301665 | Forelimb
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◣ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Cldn34d
Tmem125
Plekhb1
Tex14
Rbks
Babam2
Taf12
Rdm1
Tmem107
Gsto2
Eapp
BC107364
Pidd1
Slc25a22
Pspn
Alkbh7
Atxn2
Usp37
Cnot9
Gtf3c6
Alyref2
Cox17
Maats1
Rarb
Guf1
Rusc1
Taar7a
Taar6
Tmem82
Sbno1
Gm13283
Gm13286
Gm13271
Kctd1
Tmem115
Gm4981
Pdcl3
Gm51573
Eva1b
Knop1
Iqck
Bmt2
Sirt4
Fam32a
Pitpnc1
Speer4e
Gm4307
Gm4305
Gm4303
Tti2
Iffo1
Sbno2
St3gal3
Mrpl16
Foxp1
Hspa5
Poldip3
Homer3
Pla2g15
Tmem259
Cnn2
Irf2bpl
Zfp442
Caap1
Tradd
Hsf4
Fbxl8
Pigt
Tma7
Ccdc51
Slc35d1
Gm13290
Gm13289
Gm13285
Klhdc8b
Ccdc71
Gm13272
Ifnz
Gm13276
Zfp319
Usb1
Hes3
Tbc1d17
Akt1s1
Gpcpd1
Ciao2b
Arih2
Borcs6
Stk11
Cyp46a1
Pyroxd1
Hoxa6
Hoxa5
Hdhd3
Nr6a1
Tfrc
Nek2
Mbd3
Fbxo8
Cep44
Cdkn2a
Zfp770
Gpi1
Npc1
Oxnad1
Dph3
Dedd
Pbx2
Gpsm3
Ager
Cacnb3
Cdkn2aip
Ndufs1
Eef1b2
C330018D20Rik
Kdelr1
Pitx3
Gbf1
Ptpn6
Grcc10
Nanos3
Olfr806
Abhd6
Wwox
Kpna1
Tent5c
Csf2ra
Slc15a1
Il31ra
H4c8
Vmn2r102
H2ac10
Calr
Sspn
Gabarapl2
Adgra2
Fbxw7
Akirin2
Tmem181a
Gcgr
Tomm5
Hivep3
Efnb3
Gpx4
Ints3
Kcnk5
Bcl2a1a
Aqp3
Esr1
Fubp3
Hoxb13
H4c3
H1f6
Mtf2
Tmem33
Cdx1
Mkrn1
Xylb
Fam227b
Dtwd1
Nemf
H3c7
Cdk15
Rps29
Socs3
Bcl2a1b
Znfx1
Notch4
Cyp26a1
H4c2
Trim29
Hmox2
Ilf2
Tmem191c
Prdx6
Enpp4
Clcn4
H3c6
H4c4
H2bc6
Taf13
Olfr180
H3c2
H3f3b
Brwd1
Abl1
Rasip1
Bcl2a1d
Slc35g3
Polr2a
Cidea
Capns1
Mafa
Izumo1
Tcp11
Slc6a16
Cd37
H2bc9
Ksr1
Kat7
H4c1
Ifna13
H3c11
H2bc22
H2ac22
Cic
Mycn
Klf2
Slc43a1
H3c3
H2bc3
Ier5
H4bc24
H2bc23
H2ac24
H2ac23
H3c8
Baz1b
H4c18
Ect2
Rhobtb1
H1f5
A930033H14Rik
Pmepa1
Adam5
Abr
Ttpal
Mreg
P4ha3
Taf4
H4c11
Dppa2
H3c15
H3c14
H2ac19
H2ac18
H4f16
H2aj
Ncmap
Dchs2
Cyth4
Ier2
Vgll2
Sub1
Gnb5
Oasl1
Ing1
Ap3s2
Jund
Iqcn
Rnf19b
Trib3
Dusp9
Aadacl2fm1
H2ac4
Phf5a
Aco2
Mettl14
Malt1
Prkdc
Itga5
Adgre5
Fam24b
Ifitm7
Bmerb1
Gtpbp4
Zfp827
Sgf29
Nabp1
Nodal
Rnf13
H4c9
H2bc11
H2ac11
Gm20594
Cd44
Nfyb
Srsf3
H2bc21
H2ac21
H2ac20
H1f2
Tmigd1
H3c13
H2bc18
Tm7sf3
H2bc4
H2ac6
H3c1
H1f1
Sfi1
Dlg4
Fbxo6
H2ax
Gja4
Ttk
Fam53c
H4c17
Zdhhc18
Galnt2
H4c6
H4c12
H2bc15
H2ac15
H2bc12
H2ac12
Evi5
Foxo3
Icam1
Ppdpf
Gtf2a1
Nudt4
Gstp2
Ccin
C1qbp
Arrdc2
H1f4
Gm3448
Gm3417
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Hspb8
Rgs18
Klf4
Hnrnpab
Plk3
Rsrp1
H3c10
H2bc14
H2bc13
H2ac13
Rarg
Slc29a1
Mymx
Btg2
Smc3
Ubb
Sumo1
Mphosph9
2810006K23Rik
Dcaf4
Lrch4
Fbxo24
Asph
Hspa8
Mok
Fbxo31
Rrn3
Scn8a
Zbtb37
Rai1
Gm3435
Jarid2
Acp6
Mtg2
Creb3l3
Ube2o
Atp2a2
Tob1
9030025P20Rik
Ints6
Arf4
Cited2
Hoxa1
Arhgap19
Cbr3
Sdha
Rnd3
Ccdc127
Smarca5
Nanog
Junb
Jam2
Bcar1
Agrp
Tbc1d10b
Mylpf
Zswim8
Hrob
Ranbp3l
Spata33
Chmp1a
Sacm1l
Pcx
Ggact
Porcn
Acsl4
Yars2
Kng2
Calm2
Hexim1
Zfp532
S1pr2
Thrsp
Slc9a1
Rpl3
Stk3
Tpm2
Ttf1
Agbl5
Rfc5
Rab7
Ubxn2a
Ankrd39
Trim41
Nphs1
Olfr646
Letmd1
Stap2
Phc1
Mpnd
Arl15
Gm867
Chchd10
Sde2
Atg14
Nufip2
Rnf169
Trim7
Dcpp1
Hps5
Gtf2h1
Fus
Pnp
Mybpc3
Itpk1
Resf1
Utp14b
Acsl3
Hsp90aa1
Mis18bp1
Hrh2
Spg20
Rnaset2b
Srsf5
Eif2s3y
Sntb2
Mbd6
Ddit3
Insig1
Dpp4
Zfp143
Stra8
Nudt1
Haus1
Atp5a1
Rnaset2a
Tsc22d1
Kank3
Csrnp2
Cbx4
Ppp1r10
Mrps18b
Rps12
Mib2
Tmem135
Dnajb9
Uck1
Ccn4
Fut8
Sumf1
Npbwr1
4921539E11Rik
Capn3
Pbld2
Hnrnph3
Ddit4
Klf6
Zfp36l1
Psmb7
Plxdc1
Aven
Kazn
Sbk2
Calm1
Rbm14
Gm21992
Msh6
Gpx1
Hagh
Fahd1
Spred2
Sgk1
Rnf103
H4c14
Cltc
Gtf2a1l
Gtf2b
Ctsl
Nsd1
D230025D16Rik
Tro
Crlf2
Nop58
Hsp90ab1
H2-DMa
Brd2
Trim40
Raf1
Ndufs7
Aplp2
Atp1a1
Ndufa6
Gm648
Ankrd28
Jpt1
Ankrd44
Mpp7
Gadd45a
Dpysl3
Vars
Rpgrip1
D17H6S56E-5
H1f3
Coro1b
Prdx1
Actb
Mobp
Gapdh
Eif4g2
Misp3
Dgat2
AU018091
Clu
Tmem116
Mat2a
Erp29
Tubb4b
Tcte3
Ermard
BC005537
Ubr4
Id3
Gja1
Cyfip2
Dhx32
Copz1
Rab8a
Lman1
Il3ra
Kmt5b
Chd9
Trmt1
Serpinf2
Errfi1
Srsf2
Mfsd11
Gipc1
Men1
Sf3b1
Ghdc
Eif4a1
Mknk2
Pcna
Dusp1
Cog6
Nme1
Arl4d
P4ha1
Ctnna3
Gucy1a2
Mcl1
Zfp979
Dhx9
Wsb1
Sema4b
H2-Bl
Arrdc3
Cdh12
Tnfrsf19
Ehd4
Dag1
Dgat1
Proca1
Lipe
Trpm1
Slc12a7
Ubc
Dhx8
Lgals9
Tefm
Spc25
Ppp1r15b
Mllt6
G6pc2
Amd2
Amd1
Actn4
Ndufs8
Cenpm
Btg1
Hnrnpa2b1
Cbx3
Snx6
Gtf2f1
Adck5
Arl6ip1
Muc1
Faim
Znhit1
Wsb2
Vstm4
Plod3
Ltn1
Selenbp1
Brsk1
Amacr
Zfp119a
Mrpl37
Eef2
Cyb5rl
Ago2
Clec11a
Zfp980
Hbegf
Extl1
Trp53inp1
Ftl1
Luzp1
Agpat2
Ttc25
Tas2r134
Sema4f
Exosc5
Bckdha
Phf11d
H2bc1
H2ac1
Sertad1
Kctd5
Xrcc1
Slc38a2
Pinlyp
Vegfa
Stpg4
Sephs2
Ifrd1
Sec22c
Nfe2
Tuba4a
A630095N17Rik
Slbp
Cacng6
Spg11
Ppp2r5e
Zfp598
Gcm2
Ddx5
Cep95
Marchf3
Afg3l1
Gtf2a2
Dmxl1
Mill1
Hjurp
A730008H23Rik
Ifna6
Cela1
Chn2
Kcnn2
Atg4d
Omp
Nsrp1
Zfand5
Taok3
Rita1
Ddx54
Uspl1
Slc38a5
Styxl1
Mdh2
Fgl2
Prmt8
Fn1
Tnrc6c
Cfap126
Ptpmt1
Lgi4
Fxyd7
Fxyd1
Fah
Tob2
Rps6
Rpl11
Prdm14
Btrc
Rhob
Pabpc1
Sqstm1
Fmc1
Abcb7
Fos
Rpl26
Ppp1r3c
Skp1
Zfp710
Acly
Txlng
Itpr1
Sod1
Zfp438
Klf7
Cnga1
Pbk
Eif1
Ppp3ca
Zfp600
Tpst1
Cpt1a
Elf1
Bcl11b
Vcl
U2surp
Rwdd2b
Peli1
Tlcd1
Gfod1
Rcbtb1
Dennd6a
Vamp1
Slc25a3
Etv3l
Gc
Mdm4
Sepsecs
Megf8
Katna1
Cep43
Ankrd11
Tmem205
Ccdc159
Cat
Nudcd2
Hmmr
Eprs
Map4k4
BC031181
Cln8
Slc25a39
Tspan9
Ep400
Mnat1
Dhcr24
Trp53inp2
Fyco1
4921517D22Rik
Tmem64
Msmo1
Dnaja1
Slfn4
Dpysl2
Spata16
Eef1a1
Chchd1
Klk8
Pitrm1
Wdr77
Hnrnph1
Dcaf5
Atp5pb
Inmt
Rreb1
Grap
Atp6v0c
Adamts19
Fam131c
Mad2l1bp
Shoc2
Bbip1
Ccnyl1
Mafb
Dok4
Ttc39c
Slc9a3r1
Maml1
Mfsd14a
Havcr2
Cfl2
Rpl36al
Mgat2
Epha2
P4hb
Eif4ebp2
Arhgap27
Ddx20
Sgpl1
Rps3
Tmem60
Phtf2
Ass1
Glul
Vgll4
Rps20
Ino80c
Jun
Trmt2a
Ranbp1
Ckb
Knl1
Sap18b
Sap18
Plk2
Mterf1b
Ncl
H2-M5
Rpl23
Clic4
Snrpe
Mbtps1
Traf7
Slx1b
Bola2
Snx18
Denr
Mrpl39
Herc2
Gm36210
Pdia3
Catsper2
Cebpa
Smndc1
Gm10710
Fam174c
Cirbp
Nfam1
Gfpt2
Tor1b
Ppp1r2
H2ap
H2al3
Ctnnb1
Sap30
Sirt3
Psmd13
Ttll3
Trim58
Slc22a23
Txn1
Mterf1a
Znrf1
Sirt1
Defb48
Rpl8
Commd5
Ttc41
Hsp90b1
Ankle2
Vmn2r55
Ush1g
Otop2
Myo10
Avpr1a
Kat6b
Ubap1
Impdh2
Tra2b
Idi1
Frat1
Cdkn1a
Pnpla8
Rab13
Ipmk
Cisd1
Sec22b
Phactr3
Nup50
Il12rb2
Mpc1
Gria3
Dcaf10
Baiap2
Trpm3
Fam25c
Rps9
Rnf125
Odc1
Muc5ac
Frmd6
Zfp1
Ubr3
Fasn
Cpsf1
Dnajb6
Il1b
Tcta
Rhoa
Tvp23b
Mrpl44
Limch1
Ppp1r15a
Plekha4
Ccdc113
Prr5
Hes7
Ncor1
Foxp2
Cxcl5
Spry2
Mertk
Tmem235
Susd6
Gnai3
Cpm
Hhex
Epb41
Arg1
Urgcp
Hs3st3b1
Eif4e
Pcmtd1
Lilr4b
Orai1
Gls
Trim17
H3f4
Arvcf
Tmem79
Tmbim6
Smg5
Olfr1128
Atp5e
Tsc22d2
Max
Gabrb3
Otub2
Ccdc102a
Adgrg5
Ndel1
Atp1a4
Cdh20
Ammecr1l
Map1lc3b
Slc25a30
Exd1
Chp1
Napepld
Insyn1
Acp5
Nkg7
Lim2
Gnl2
Hnrnpu
Gca
Sesn2
Rpl17
Mrpl21
Ighmbp2
Gpr141
Paxip1
Fam207a
Dpp9
Slc5a3
Slc44a3
Mrps6
Hmga1b
Hmga1
Uqcrc1
Olfr1396
Klf10
Zmiz1
Por
Myo1d
Erf
Slc25a51
Rilpl2
Pdhx
Nxf1
Apip
Klhl21
Gas1
Txnip
Mllt10
Kifc3
Fdx1
Cep85
Rxrb
Npy5r
Mrpl1
Pnma2
Mylip
Id2
H2-Q8
H2-Q6
Dock6
Sh3yl1
Acp1
Lsm14a
Kcnk4
Rara
4932438A13Rik
Zfp219
Ncapd2
Mrpl51
Chordc1
Mrps28
Ints11
Cptp