ChIP-Atlas: Target genes

Potential target genes for SOX9

Query protein: SOX9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX11220467 | HT-29
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SOX9's Target genes

◢ SOX9: Average

◢ SRX718108: hESC derived pancreatic cells

◢ SRX4065343: hESC derived retinal cells

◢ SRX4065344: hESC derived retinal cells

◢ SRX4065345: hESC derived retinal cells

◢ SRX4065346: hESC derived retinal cells

◢ SRX4065347: hESC derived retinal cells

◢ SRX4065348: hESC derived retinal cells

◣ SRX11220467: HT-29

◢ SRX11220468: HT-29

◢ SRX768290: HT-29

◢ SRX11416753: KARPAS-422

◢ SRX11856133: LNCAP

◢ SRX11856134: LNCAP

◢ SRX11856137: LNCAP

◢ SRX11856138: LNCAP

◢ SRX11856139: LNCAP

◢ SRX11856140: LNCAP

◢ SRX11856141: LNCAP

◢ SRX11856142: LNCAP

◢ SRX359919: LoVo

◢ SRX13867212: MCF-7

◢ SRX13867213: MCF-7

◢ SRX13867216: MCF-7

◢ SRX13867217: MCF-7

◢ SRX10175282: PANC-1

◢ SRX10175283: PANC-1

◢ SRX1510444: VCaP

◢ SOX9: STRING

BCL9L
TINAGL1
C2CD4D
NOXO1
GFER
CDYL
SH3KBP1
LRRC75B
GGT1
GPSM3
KLK6
PCDH1
NOTCH1
SLC35A5
ATG3
PPDPF
TMEM63A
DNAJB1
LAMB3
SLC5A1
WWP2
RBM7
C11orf71
COX19
CYP2W1
ETNK1
MTF2
PLEKHB1
TP53BP2
KCNH8
SNAP29
PI4KA
FRMD5
PLEKHG4
UNKL
IL17RB
CHDH
TNS2
CFDP1
PDE8A
XRRA1
SPCS2
TMPRSS3
IRF2BP2
FRG2C
SLA2
CYP2R1
ADAP1
MTBP
MRPL13
SPTBN1
PSMD14
ACSS1
THOC1
HMX3
HECTD2
MAMDC2
XPA
ECPAS
SHF
SPTBN4
CABP7
SEPTIN9
CNFN
TNRC18
RB1
PLPP2
RABGEF1
RASEF
EFR3A
TSKU
NWD1
RAB33B
PELI1
ZNF609
STXBP3
SLBP
H3C6
LEPROT
LEPR
FOXA2
ITGA6
ETV4
TTYH3
PELATON
ZNHIT1
PLOD3
FMN1
DENR
MACC1
STK32C
LRRC27
NPL
KIAA0895
ANLN
ABHD11
NRARP
NCMAP
ZFP36L2
PAQR4
ECHDC2
LSR
SPATA20
OBP2B
CCDC200
FGFR4
IGSF10
ATAD2
POLG
ARHGEF38
OGA
CCDC9B
ZNF862
GGNBP2
ARHGEF1
MUC3A
CLIP2
NQO1
DNAJA4
TLE3
EFNA4
BICD2
TTC30B
SDHAF1
SH3TC2
TES
RTKN
NFE2
ZNF572
XKR8
USP3
ACAP2
STARD3
PPP1R1B
NBEAL2
CCDC12
TMCC3
LMF1
TRIM47
WDR74
SUPT20H
LEFTY1
NPNT
LDHA
TRIM29
MAN1A2
CPSF4L
SDHC
MPZ
PDP1
POR
SHOC2
BBIP1
RAB4B
MIA
RBM39
SMC4
IFT80
SETX
CLDN3
MYH14
GNG8
PTK2
LYPD3
TP53INP2
TBC1D14
ETV6
FRG2
SLC26A8
MAPK14
PAQR6
ZFAND4
PLOD2
SMYD3
CAVIN1
MAMDC4
RUNX1
RNF169
TMEM168
AAR2
CCN2
TACSTD2
RCC2
BTG1
SLC16A3
DTNB
COA1
ZNF473
VRK3
FOXO1
MET
DNAJC14
ZSCAN2
FZD6
ZBTB38
COBLL1
ITGA2
NF2
MVB12A
COL23A1
LRATD2
UTP23
TYMP
SCO2
ODF3B
SPATA5L1
GATM
OTUB2
FARSA
CALR
TTC23L
NCOA5
IQCH
AAGAB
TMEM209
SSMEM1
ABTB2
LIMCH1
C17orf58
SLC35E2B
RRBP1
FAM227B
DTWD1
PPP6R1
PPIC
GLIPR1L1
CAPS2
FAM91A1
PCP2
STXBP2
RTN4RL2
KRT15
LIPG
CRY1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PLA2G2E
FNDC3A
DOCK9
LHPP
ABCD3
UGGT2
SMARCD2
TATDN1
NDUFB9
CDC42BPG
NDUFB2
PIGBOS1
PIGB
WDR93
PEX11A
NECTIN1
PFDN4
LMO7
TUBGCP5
FBLIM1
SLC35B4
FOXC1
GBA
USP15
CCSAP
PAIP2B
MCIDAS
CALM2
SBF2
DBP
FSIP1
BCL2L11
ZCCHC4
PIP4K2B
WDR61
TMEM39A
APBB2
OGT
ALOX5
SPATA9
RHOBTB3
KANSL3
FER1L5
PBX3
LZTS3
SHKBP1
RNF135
SLC44A1
CACNA1S
ASCL5
ARHGEF17
HSPA6
MEMO1
CCDC93
KMT5B
E2F6
SRP14
SLC35E2A
BBS9
ERCC6L2
PTEN
KLLN
MRPS31
ATL3
PPP1R9B
RGS3
IKBIP
APAF1
NME4
DECR2
CCNI
PSMD5
FKBP5
HILPDA
THBS1
ARNTL
CHSY1
KCTD12
RPS29
NOL7
LRR1
ZNF264
FOSL1
FST
EFNA1
COMMD6
FAM228B
PFN4
AMMECR1L
EIF1AD
BANF1
MRPL30
MITD1
NUP85
FZD1
PTMA
BCL11B
IFT81
HGS
ARL16
VRK2
SLC4A8
GALNT6
PRDX1
C17orf75
GLCCI1
ZNF180
TBC1D30
MIA3
RPL26L1
BTBD10
PRKAR2A
PGBD2
TMEM65
UROS
BCCIP
RPS19
HSCB
CHEK2
DARS1
EEF1AKMT2
PRR25
RPS11
RALGAPB
SMIM11B
SMIM11A
TESK2
KLF4
OTULINL
RHBDD3
EWSR1
RBM48
PEX1
ERCC5
HMGB1
MSANTD4
CDK12
RABGAP1
SCOC
CCNF
ARID2
FCHSD2
PPP1CB
STUB1
JMJD8
TTC30A
RHBDL1
UFD1
CDC45
ARHGEF5
JAG1
CLDN4
CROT
CCND1
PRR7
LFNG
FAM200B
CD2BP2
TRMT2A
RANBP1
RRAS2
USPL1
FNDC3B
SF3A2
PLEKHJ1
ABRAXAS1
CDKN2C
IFIT5
TAF15
CDC42EP3
POGLUT2
BIVM
ELL2
USP47
COPG1
SSBP1
RBM34
NMI
USP48
MINDY2
CDADC1
PPP5D1
CALM3
WASHC5
NSMCE2
NOTCH2
FGFBP3
EPOP
PRCP
DDIAS
AQP5
MYL12A
C21orf91
AHCYL2
DNAJC27
S100A2
PLA2G7
PTDSS1
MTERF3
INTS12
GSTCD
RUBCNL
PLS1
RCL1
C8orf76
TARS1
RPL27A
SLC25A36
CEP152
MRPL40
HIRA
USP1
PHF5A
ACO2
LDHB
DYNC2I1
CCNL1
TTC32
GPR180
ARHGEF7
AMACR
HNRNPA2B1
CBX3
MYH9
UBR7
GON7
RBCK1
HNMT
LIN54
SKA3
MRPL57
TXNDC9
EIF5B
SLC39A10
DUX4
COL9A2
WDPCP
MDH1
SCYL3
TTC14
SLC2A13
PHLPP1
VMP1
PTRH2
HYLS1
MTHFD2L
SFMBT1
FBXO47
RNF103-CHMP3
RMND5A
TBC1D31
PTPN13
PTPN4
C9orf139
ABCA2
CCS
CCDC87
ITGB3BP
EFCAB7
NREP
DDR1
ARID1A
PGM2L1
WDFY2
TMEM71
PHF20L1
IQCC
DCDC2B
CCDC28B
IL1RN
PPM1D
BORCS6
PARK7
NUP107
SORT1
NOL11
ZNF143
SECISBP2
TIPIN
POLR2G
PPL
TRIM62
IFRD1
ROPN1
DNAAF3
UBE2I
CBWD5
CBWD3
PCNX3
MAP3K11
SEPSECS
ZNF614
ZC3H8
INO80C
ZNF195
QTRT2
CCDC191
WDR27
C6orf120
RNF130
EHHADH
PRR19
PAFAH1B3
UCHL3
FKBP9
MAFG
SERTAD3
FGFR2
RIPK4
GDF5
CEP250
PLEKHA8
FKBP14
STARD4
LCN2
NHLRC2
DCLRE1A
DNAJC3
PPIB
GNB2
EED
PDE4DIP
ZFAND3
UCHL5
RO60
RINT1
KMT2B
PCNP
ASPH
BCAR3
GORASP2
FAHD2A
LSM8
PYROXD1
KLHL7
ZDHHC24
ACTN3
TMSB4X
SNX17
EIF2B4
GRAMD2B
MATN1
YTHDF3
PRKCI
GGCT
DSCC1
NANP
MRPS30
LY75-CD302
LY75
ADGRG1
SPHK2
RPL18
FAM83E
MRPL3
ZNF76
MED4
IGFL4
LOC107984974
EMSY
GSK3B
ASXL1
FAM83D
DIAPH3
ZBTB40
DPY19L3
SYT7
CHD2
SELENOT
NFKB2
PDRG1
VANGL2
PAPSS2
STX18
KRT8
STARD7
SPACA9
AK8
RANBP9
DPY19L4
CCDC130
H4C12
CRYBG1
G2E3
MAL2
PGLS
GALNT3
MAT2A
KANSL2
ZHX1-C8orf76
ZHX1
RAD21
NDFIP2
RTN3
TOE1
MUTYH
GPR137
BAD
CUEDC1
MED30
TPD52
CD46
TMEM18
MOCS2
NUF2
ARL14EP
ZNF497
KMT2D
PTPDC1
UBE2F
SECISBP2L
NFATC2
PIK3R3
HEXIM2
SETDB2-PHF11
SETDB2
CAB39L
PPP4R3B
ZBTB11
RC3H2
COQ9
CIAPIN1
PROB1
MZB1
ACTR6
CCNJL
WDR11
RUVBL1
THADA
PMS1
ORMDL1
CARNMT1
TMEM9B
RASGRF2
PRKD3
CTNNB1
ZNF777
CPEB3
LIG4
ABHD13
MARCHF5
ZC3HAV1L
TTC39A
PPP1R13L
POLR1G
RBM28
PNKP
TTC26
TRMT61B
SAP18
TENT5A
ITGB1
ELMOD2
COL9A3
EXOSC10
CEP126
ANGPTL5
DMBX1
ZNF780A
GIT2
ANKRD13A
PRKDC
MCM4
ARHGAP27
GADD45A
SQSTM1
CBLB
MGAT4B
ARHGEF35
PDF
PTBP3
RPN2
MROH8
MRPL45
GALK2
COPS2
RNF19A
VPS50
HEPACAM2
ACOT2
TP53I3
OTULIN
ZCCHC9
TCF12
B3GALNT2
GTF3C2
SNRPG
LSG1
COMMD2
SCAF11
ZNF576
IRGQ
FRG1
YPEL5
TNNI3
ZNF518A
REEP6
PCSK4
WRNIP1
MYLK4
NOP56
MRPS24
CALU
RNF139
CCNC
EDEM3
MRPS35
TUBG1
RETREG3
UBE2T
PPP1R8
PLXDC2
FOXD4
ZNF280D
SNRPB2
CLCF1
FAM98A
RPS27A
CLHC1
MTREX
DHX29
SMARCA5
GTF2H2
NAGK
TRNAU1AP
RPS27L
TIMMDC1
POLE3
C9orf43
C6orf89
CDC42EP1
DISP1
WDR53
FBXO45
THAP5
DNAJB9
NUFIP2
GSDMD
CPEB2
C1orf115
EIF3A
TNFRSF11B
COLEC10
INTS6L
CDON
EIF2AK3
ZC3H6
ERCC1
KDM3A
C19orf48
HSPE1-MOB4
HSPE1
HSPD1
C9orf85
ABHD17B
TSPAN12
ZNF711
SATL1
SHROOM1
TBC1D17
AKT1S1
PTCD2
MRPS27
GPR37
DCBLD1
RRM1
CORO2A
ARL2BP
BET1
PTOV1
VIRMA
RMDN2
HES6
ZNF226
UBC
GTF3C3
NBN
MRPL42
HAGH
FAHD1
MAP3K13
LRRC58
TRMO
UBR2
ITGB5
FBF1
ICE2
SHC3
STXBP4
COX11
GPSM2
OTUD7B
METTL9
POC5
TMED2
ZNF451
KIF16B
TRAPPC2
OFD1
HELZ
ITGB8
CFAP20
WDR36
GLCE
MVK
TUT1
MEF2A
ZNF770
WDR33
COG7
BICDL2
RTL10
GNB1L
ARSJ
CEP63
ANAPC13
ESRP1
RPS3A
EIF4A2
ZFC3H1
THAP2
VPS36
CKAP2
CSTF3
DDX6
ZMYM5
LOC100129484
SUPT5H
RPS6
KBTBD7
TIMM10
EID1
SMIM10L1
PRH1-TAS2R14
PRH1
ZZZ3
BBS7
SPAG5
IQCB1
EAF2
SMCHD1
PDXDC1
ADPGK
HACD3
FAM98B
NUDCD3
MRPS33
NUP133
GCLC
PARPBP
NUP37
UACA
TMEM249
SLC52A2
FBXL6
NMD3
TPH1
SOX6
ZNF165
JOSD2
ASPDH
NAT10
ZFAT
NUP153
B2M
PLEKHA1
C11orf58
VWA2
ROPN1B
DLST
PGBD4
EMC7
BZW2
ANKMY2
IREB2
FAM3C
KRIT1
DNAJC25-GNG10
DNAJC25
ANKIB1
SPAST
GSAP
FCHO2
DDX52
ARPC1B
NDUFV2
PLAC8
UQCRQ
GDF9
DMTF1
NFIB
RAB30
TIAL1
KDM5B
CDK8
FOXJ3
COG6
PTPN2
NSD2
ZPR1
APOA5
TAS2R14
SHPRH
TRPT1
NUDT22
DNAJC4
SRI
NCSTN
COPA
HEXA
RRP15
LNPEP
INKA2
MTIF3
XPO1
TFB2M
CNST
GPAM
AJUBA
ZKSCAN2
MYCBP2
NDUFB4
C18orf25
ZW10
CDK17
ADAMTS7
GOT1
ADNP
LYRM7
MRPS14
SPRED1
LIN7C
C1orf74
TTC37
ARSK
RHPN2
DPF2
SLC24A1
PRKAB2
CHD1L
SRSF7
THEM4
ACOT4
DDX20
ANKRD36C
FUT4
ZNRF2
MRPL11
CCNY
SMC5
FANCI
TRIP4
CENPE
HMGCR
ORC5
CCNG1
SKAP2
MMADHC
RUFY3
INTS13
FGFR1OP2
PACSIN3
TMEM87B