ChIP-Atlas: Target genes

Potential target genes for SOX9

Query protein: SOX9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX11856139 | LNCAP
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
SOX9's Target genes

◢ SOX9: Average

◢ SRX718108: hESC derived pancreatic cells

◢ SRX4065343: hESC derived retinal cells

◢ SRX4065344: hESC derived retinal cells

◢ SRX4065345: hESC derived retinal cells

◢ SRX4065346: hESC derived retinal cells

◢ SRX4065347: hESC derived retinal cells

◢ SRX4065348: hESC derived retinal cells

◢ SRX11220467: HT-29

◢ SRX11220468: HT-29

◢ SRX768290: HT-29

◢ SRX11416753: KARPAS-422

◢ SRX11856133: LNCAP

◢ SRX11856134: LNCAP

◢ SRX11856137: LNCAP

◢ SRX11856138: LNCAP

◣ SRX11856139: LNCAP

◢ SRX11856140: LNCAP

◢ SRX11856141: LNCAP

◢ SRX11856142: LNCAP

◢ SRX359919: LoVo

◢ SRX13867212: MCF-7

◢ SRX13867213: MCF-7

◢ SRX13867216: MCF-7

◢ SRX13867217: MCF-7

◢ SRX10175282: PANC-1

◢ SRX10175283: PANC-1

◢ SRX1510444: VCaP

◢ SOX9: STRING

SLC35E2B
DUX4
LOC102724770
DGCR6
SLC35E2A
PGBD4
EMC7
MAMDC2
CNOT6
FAM53C
CDC25C
FRAT2
MTRNR2L8
FRG2
FLCN
MYO9B
HAUS8
PPIB
TSPAN4
POLR2L
CD151
PTDSS1
MTERF3
ATG16L2
DGAT2
FRG2C
PHRF1
GIT2
ANKRD13A
NDST2
ZNF219
TMEM253
PRKCI
WRAP53
TP53
PIK3R3
BCL6
PDXDC1
CSTB
ETV2
COX6B1
IQCE
BRAT1
ART1
PARK7
TAF15
PROX2
RHBDD3
EWSR1
POLG
SETD5
CENPP
NOL8
CMC2
CENPN
OGA
POR
RNASEH2A
PRDX2
NOCT
ZNF300
HYAL1
TUSC2
HYAL2
FUS
PAXIP1
YY1AP1
DAP3
FRAT1
FOS
TIGD5
EEF1D
PSIP1
MYL12A
MYL12B
ESRRG
EIF3B
AKIRIN1
SS18
SNAP29
PI4KA
TMEM129
TACC3
SLBP
RPN2
MROH8
TTLL7
CDIPT
PMVK
C6orf62
PRDM10
RNASEK
C17orf49
IQCH
AAGAB
UQCRC2
PFDN4
LSR
OXR1
EED
ASAH1
ZFAND3
STK35
RPL22
RNF207
RPL19
CACNB1
GNB2
LIN54
HDAC2
DUT
CDCA7L
LANCL2
MTRNR2L1
UBE2B
CDKL3
SRXN1
OLFML2A
NR6A1
KCNAB2
C6orf226
SMC3
BTNL9
TCP11L2
FZR1
DOHH
WDR38
RPL35
ARPC5L
TARDBP
FBXO33
CD164
ASH1L
HAP1
MAT2A
LYRM1
DCUN1D3
ATG101
SMIM41
CDON
FAM240C
COMMD6
UFSP2
C4orf47
DNMT1
UROS
BCCIP
FRMD6
FAM110A
TTF1
CFAP77
TMEM260
UTP18
MBTD1
DISP3
TAF6
MBLAC1
CNPY4
MRPS11
MRPL46
COL23A1
C21orf91
NDUFB1
CPSF2
C11orf94
UIMC1
TRAPPC6B
PNN
DPP9
SRI
MIA2
TADA3
ARPC4-TTLL3
ARPC4
SELENOW
PRKDC
MCM4
CUL2
PGP
MLST8
BRICD5
CASKIN1
DBP
CA11
GET3
TRIP10
GPR108
USP15
FAM227A
CBY1
MTMR14
ATP6V0C
AMDHD2
MGRN1
UBALD1
UCHL3
RAB28
ATP8A1
MTCH1
CFAP221
MYT1
WASF2
WASF1
CDC40
GTPBP6
TNFRSF6B
CFDP1
RMND5B
RPEL1
PTOV1
SYVN1
PRR19
PAFAH1B3
MUC20
PAX8
BCL9L
TINAGL1
MTRNR2L2
MSH3
DHFR
PKDCC
RORC
C2CD4D
KIF5C
PPDPF
PBX2
GPSM3
NOXO1
RGPD1
ARRDC4
SMARCD2
CDYL
RGPD2
SYNGR3
GFER
PLEKHB1
TBL3
MTF2
MYH14
LZTS2
DAB2IP
SH3KBP1
PTPRN2
SNX16
DOLPP1
KIF12
MYO5C
LRRC75B
GGT1
SOWAHA
ZNF775
KLK6
ZBTB32
SDF4
B3GALT6
WDR97
MAF1
CYC1
CLDN9
PCDH1
RNF13
FAM227B
DTWD1
STX16
C1QTNF12
KHSRP
SEMA3B
LRATD2
RAB4B
MIA
ARHGEF1
SLC35A5
ATG3
TRNP1
PLEKHG4
CYP2W1
COX19
SPATC1L
TECR
DNAJB1
FAM102A
HMGCS1
SOX8
LMF1
UNKL
MRPS24
C16orf91
TNNI3
DNAAF3
CNFN
PPP2R2C
STIP1
PDE8A
LY6L
FAM72C
FGFR2
CIC
ETNK1
SPTBN1
NOTCH1
ZNF217
SRGAP2B
FAM72D
ARNTL
KMT5B
KAT7
WWOX
PAQR4
KREMEN2
UBE2C
RASSF7
LMNTD2
HBP1
PITPNM1
TMEM160
ADAMTS9
PPP6R1
NUCB2
BZW2
ANKMY2
ZNHIT1
PLOD3
AMOTL2
KCNH8
LAMB3
TMEM63A
LEFTY1
VPS37B
ABTB2
TESC
RNF103-CHMP3
RMND5A
PPP5D1
PNPO
CALM3
RPS29
WWP2
WASL
SHKBP1
TSKU
GATAD2B
TRIP4
PCLAF
TNRC18
RTKN
LOC100129484
XRRA1
SPCS2
E4F1
EIF2D
NCOA3
HMGB1
SRGAP2C
FAM72B
ACSS1
HNRNPL
USPL1
KANSL3
FER1L5
TEPSIN
NDUFAF8
DGLUCY
MTBP
MRPL13
E2F6
ZNF609
SAP30BP
RECQL5
H3C6
H2BC8
H2AC8
CCDC59
SLC25A42
ANKRD39
MUC3A
ZNF8
TMEM242
PROSER3
LIN37
HSPB6
FAM83D
CNOT3
PDE6A
ZCCHC4
ZBTB3
IL17RB
CHDH
ITGA6
FOSL1
MTRNR2L9
NWD1
MRPL20
CCNL2
MRPS31
MAPK6
EPN1
USP3
SSBP1
TEDC1
RRBP1
PRRC2B
FANCI
SLA2
PIP4K2B
ANP32A
IRF2BP2
DPY19L4
EAPP
GTF2IRD2B
HMX2
TTC9B
CCNP
DRAP1
C11orf68
ULK4
H3C15
H3C14
FBXO5
ARAF
H2AC19
H2AC18
FGFR4
PSMD14
H4C15
H4C14
ARHGAP19
ZFAND4
RBM7
C11orf71
GOLGA6L10
KRT19
KRT15
SRGAP2
LUC7L2
FAM72A
PLP2
MAGIX
CABP7
FYN
TRAPPC9
OGDH
SRPK2
SERTAD1
DNAJA4
LAD1
FBN3
HHIPL1
CCDC85C
KPNA2
RRM2
TP53BP2
CNOT1
FDFT1
TMEM45A
LYSMD2
HMX3
FRMD5
ZNF335
CNP
TSKS
AP2A1
TOP2A
TANGO2
ARVCF
HBD
HBB
CYP2R1
LEPROT
LEPR
TUBB4B
STK32C
SMIM35
LRRC27
FAM166A
THOC1
SULT1A4
SULT1A3
SLX1B
SLX1A
BOLA2B
BOLA2
TMOD2
PRCP
DDIAS
SOD2
NCDN
KIAA0319L
STX18
SLC5A1
KANK1
ANKRD12
TES
RUBCNL
USP17L20
USP17L22
PRKACA
ANP32B
LRR1
PRDX1
UBA1
RELA
ZMYM5
CBX5
TNS2
PRR3
GNL1
ATAD2
ANKRD10
TLE3
KCTD2
ATP5PD
STXBP3
DNAJC14
RABGEF1
ARHGEF19
TMPRSS3
MRPL21
IGHMBP2
MICAL2
SLC38A2
TRAF2
RAB33B
CLDN12
OSBPL2
TBC1D17
PNKP
AKT1S1
SHROOM1
SP2
PLA2G7
UBE2A
CXorf56
ATP5MC1
ALDH3B1
ACAP2
C20orf204
PSPN
ALKBH7
GLIPR1L1
CAPS2
RUVBL1
ITGB8
ZNF3
COPS6
WASHC5
NSMCE2
ZNF180
TSPAN8
PDK2
BCL2L1
SORT1
PELI1
HSP90AB1
MSANTD4
PPP1R13L
POLR1G
PLPP2
KMT5C
C2orf42
OTUD7B
FAM228B
AP3S2
FMN1
BAZ1B
UCKL1
CCDC85B
UQCRQ
LEAP2
KMT2E
GDF9
PTPRH
MBNL1
SELENOH
INTS12
GSTCD
GBA
AURKAIP1
PIF1
BOLA2-SMG1P6
NUP107
SKA2
PRR11
ADAP1
HECTD2
ZNRF3
GPR137
PLAG1
KCNK4
CHCHD7
BAD
ZMYM2
SLC11A2
CALU
CALR
ZNF572
PSMD6
TSC22D1
LRCH4
H2BC15
H2AC15
FBXO24
CCDC9B
ATF7-NPFF
ATF7
SYNGR4
HDAC1
TBC1D14
TMEM167B
FMC1-LUC7L2
FMC1
PRR15L
STPG3
PMF1-BGLAP
PMF1
OTUB2
ETV4
AKR1E2
HNRNPA1
PCYT1A
POLR2J3
NUF2
BCAS3
UGT2B7
TMBIM4
SSNA1
ANAPC2
ABHD2
SIRT2
NFKBIB
CANX
ITGB3BP
EFCAB7
PTPRA
PTP4A2
NBEAL2
CCDC12
TOM1
TBRG4
RASEF
EFNA4
SPRYD3
EIF2AK3
PACSIN2
PANK2
RAC3
TFPT
PRPF31
CNNM2
HPS5
GTF2H1
CENPE
PLCE1
ARHGEF38
TRPV4
OTOGL
VTCN1
EIF1AD
CST6
COQ8A
BANF1
NFE2
KIF1B
MRPS23
DUSP6
GOLGA6L3
GALK2
GOT1
TMEM168
PRR7
NLK
RPS3
H2AZ2
SART1
HOMEZ
GTF2H2
SEPTIN9
ISOC2
ZNF687
TMEM94
SLC33A1
LSG1
MRPL40
HIRA
ANKHD1-EIF4EBP3
ANKHD1
FARSA
SP1
PPM1D
SLC24A1
INTS14
TRIM37
INAVA
SLC34A3
SMC4
IFT80
ATG9B
ABCB8
MADD
RAD23A
CLTC
HR
COPS7B
ATP5F1E
NFYC
SLC35B2
RNF43
NFKBIE
UXS1
LMCD1
TP53I3
SF3B6
SF3A3
NARF
CYBC1
MED23
FAM20B
ENPP3
ADPGK
PELATON
MYBL2
RNF6
SRCIN1
DSTYK
GOLGA6L4
DCLRE1B
AP4B1
SLC44A1
TESK2
MMACHC
CCDC163
BMP5
RBBP5
YWHAQ
PDIA4
MRPL44
EMSY
IVD
DYNLL1
GTF2H2C_2
TMEM262
ZNF484
RDH12
RDH11
USP17L21
USP17L12
RBM42
PKNOX1
GATAD2A
PEX3
ADAT2
VBP1
SUN3
C7orf57
CEP63
ANAPC13
TM4SF1
PRR14
MAST4
FBRS
SASH1
HACD3
CCDC116
ARHGEF12
TUBD1
RPS6KB1
MYO19
GGNBP2
ACVR1B
MCM7
AP4M1
PDE8B
TRIM2
TMCC3
FAM86B1
UFD1
CDC45
TMEM258
SSR3
FEN1
DYNC2I1
SLC25A10
MRPL45
MRPL12
HNRNPUL1
GIPC1
PDE6D
WDR62
THAP8
ZNF574
WDR11
MACC1
KIAA0895
UNG
ALKBH2
MTSS2
CSNK2A1
ZKSCAN1
UGP2
RCN2
NUDT2
KIF24
FAM222B
PRKAB2
MRPS10
CHD1L
ARHGAP39
COMMD2
TOMM40
EFNB2
SHF
SCP2
HDGFL2
FZD1
BACE1
UBC
SFXN5
SREK1IP1
CWC27
TSPAN31
CDK4
COA1
ARHGEF7
TAF13
DHX36
TMTC4
TMED9
SORBS3
B4GALT7
FBXO32
RAB5B
PMEL
CDK2
TTBK2
RPS7
GTF2IRD2
PI4K2A
DIAPH1
CRYAA2
CRYAA
INTS5
SNX17
MYADM
GPR84
EIF2B4
CDKN3
PRKAG2
PTCD3
POLR1A
MAMSTR
H4C9
H2BC12
H2AC12
LEMD2
MIA3
SPTLC2
VMP1
PTRH2
TMEM60
SPATA20
PXMP2
POLE
PHTF2
EEFSEC
CNPY3
ZSWIM4
SPAAR
HRCT1
GTF2H2C
DAZAP2
VGLL4
RPL26L1
RUVBL2
HMGCR
GYS1
TREH
RAB11B
G3BP1
PTMA
PAK4
PSPH
CCT6A
NME1-NME2
NME1
MEIS1
KCTD7
IFT46
ARCN1
PRORP
PPP2R3C
OSBP
NREP
ATN1
CUEDC1
ZNF48
DICER1
AQP5
LRRC37A3
WDR74
STX5
CSPP1
COPS5
RWDD1
VIRMA
PCYOX1L
MGLL
CTDP1
BAZ2A
ATP5F1B
YJU2
SYT8
MAP11
ZNF862
PARD6B
SRSF7
NFIB
DERL1
CDK12
ZNF24
ODC1
ARID2
TBC1D30
RBM28
PAIP2B
NOL11
MAPK9
PSMG2
RFX1
NDUFS7
STEAP2
SCAND1
TMEM229B
RPS11
RPL13A
FMO5
NHLH1
HLF
ETV6
ECHDC2
POLR2G
LMOD3
HNRNPC
ACTN1
GSN
DENR
FANCF
ZBTB45
ARHGAP27
COL9A2
OPA1
B3GALT2
KMT2A
TTYH3
OPA3
HEXIM2
THUMPD1
RBM48
PEX1
ASPM
SLC46A3
TRIM29
SYCP2
PPP1R3D
FAM217B
IFT52
RHBDL1
UTP23
ARHGEF5
AK2
VASP
RBM27
EFR3A
IFI35
CDK16
TSR3
GNPTG
CCT5
ATPSCKMT
S100A13
S100A1
CHTOP
PPP6R3
ZSCAN22
SZT2
RNF169
MED8
EIF3E
ZNF513
TATDN1
NDUFB9
EXOSC10
CHCHD6
ARL6IP1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24