ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441331 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX10448664: HeLa

◢ SRX10448665: HeLa

◢ SRX10448666: HeLa

◢ SRX10448667: HeLa

◢ SRX5441330: HeLa

◣ SRX5441331: HeLa

◢ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ SRX9237243: K-562

◢ SRX9237244: K-562

◢ SRX9237245: K-562

◢ SRX9237246: K-562

◢ SRX8945051: U2OS

◢ SRX8945057: U2OS

◢ CPSF3: STRING

RABL2B
ZNF335
RABL2A
TSN
SRD5A1
MAPKAPK5
DYNC1LI2
NVL
CACTIN
NUP85
ICE1
PSMD12
MRPS7
GGA3
POLR3F
DZANK1
NCLN
VDAC2
GOSR2
REXO1
OAZ3
MRPL9
C19orf48
HSPA9
BLCAP
NME6
IPO13
POLR2E
SUCLG1
UBE2I
SUDS3
CAPRIN1
EXOSC5
BCKDHA
SLC35B1
EFTUD2
CCDC103
RWDD1
ZNF576
IRGQ
MRPS5
ACTR10
RBBP5
COX7A2L
DCTN1
VTI1B
PSMD1
CDC73
PES1
SEC61B
ALG2
COMMD1
CCT4
SART3
ISCU
UPF2
HADHB
HADHA
LYRM4
FARS2
RABGGTB
TSNAX
PSMG2
CEP76
FARSB
NDUFA4
PDAP1
BUD31
STAM
PI4KB
MTRNR2L8
SUPV3L1
NUP205
STAM2
SKP1
PNO1
RPL21
USP1
ZRANB2
FLOT1
PAK1IP1
C6orf52
ATP5MG
GOLGA5
DVL2
SELENOF
HS2ST1
VARS1
GADD45GIP1
B3GALT4
PTGES2
KRBA2
TAF9
RAD17
AK6
ANAPC7
SNAPC5
RPS27A
CLHC1
PDHX
APIP
AXDND1
DDX39B
EIF2S3
SMC2
EIF4ENIF1
MRTO4
EMC1
TTC8
PIN4
ZC3H10
TM9SF1
TMED1
RPL35A
IQCG
C6orf226
RPS23
ATP6AP1L
ATP5F1E
VPS28
ADK
AP3M1
H4C15
H4C14
PCBP1
DPH6
SF3B3
COG4
H2BC4
H2AC6
NDUFA10
SCRIB
RXYLT1
AMDHD2
BICRA
SUMF2
RBKS
BABAM2
SYCE2
NRAS
MRPL38
H4C12
RPS12
H4C11
GLRX2
UFM1
DENR
XPNPEP3
ST13
DGKZ
C18orf32
FAM104A
C17orf80
BAG6
ARFGAP2
CDK12
PYGO2
LOC101928120
EDC4
CD68
RNF225
MRPL24
PAF1
GORAB
MTRNR2L2
RPN1
PROSER1
NHLRC3
SYNRG
PCBD2
ANKLE2
ALKBH5
H3C15
H3C14
H4C3
HSPA1B
H1-2
CHMP2A
GTF3C4
DDX31
DNAJC9
GET4
H2BC21
H2AC20
H2AC21
C17orf49
PRKAG1
EXOSC6
ABTB1
RGL2
H1-4
H2BC5
DDAH2
LAMP1
SIRT7
RPS29
LRR1
INPP5E
SRSF11
LRRC40
ZNF34
CUL7
TBCK
AIMP1
CMTR1
RPL7
RDH10
VPS9D1
NDST2
POLG2
PHF1
STK36
RNF25
FAM131A
MEPCE
ZCWPW1
EPN1
PRRT2
CISD3
BNIP3
CNPY2
RIT1
RHOT2
LMAN2
VARS2
FAM83E
RPS10-NUDT3
RPS10
C19orf53
PRKRIP1
SURF6
ZBTB45
TRAP1
MYG1
ZNF580
NAPRT
TTC33
ZNF383
RAD23A
BTBD10
GPAA1
ATAT1
MSH4
RRP36
TIMM13
CCDC34
SMG5
POLDIP3
SEC11C
DNAJB14
SGSM3
WDR90
AGAP11
SLC39A13
HMCES
RICTOR
HOXA5
MOV10
H2AC19
H2AC18
GCN1
ARHGAP11A-SCG5
ARHGAP11A
OSGEP
APEX1
MMP24OS
MMP24-AS1-EDEM2
C19orf71
DHRS11
TMPPE
GLB1
RCOR3
CD320
CLUAP1
SECISBP2
SPCS1
GLT8D1
ECI1
POLD1
ROGDI
SF3A3
FUT11
DPH7
POLR2J3
VWA7
ARF3
LRRC37A3
CENPBD1
ATXN2
H4-16
LLGL2
GABARAP
STYXL1
SLC25A10
H4C8
MRPL34
HDAC10
GGA2
JMJD8
MRPL53
C8orf82
JMJD7-PLA2G4B
JMJD7
SLC25A11
RNF167
CELF1
ZMIZ2
TRIP4
STRIP1
COMT
PSMD5
NAT10
EIF4A1
SCAMP3
FAM174C
CCAR2
DHPS
GTF2IRD2B
POMZP3
GPS2
CYBA
TBC1D13
SLC26A11
SGSH
MAZ
DALRD3
NDUFS3
KBTBD4
SRRT
BAZ2A
WDR6
NUF2
H1-5
H2AC16
NDUFS7
ARHGEF1
PUF60
COMMD2
PNMA1
MAP2K2
RPL37
MRPL40
HIRA
H3C13
H2BC18
CDK11A
ADPRHL1
HSD17B8
CRELD1
H3C2
H4C1
H3C1
NOP14
GRK4
TSPAN10
NPLOC4
H2BC11
H2AC11
NECAB3
LRP6
DRAP1
C11orf68
NOTCH2NLA
XRN1
ABCB6
CS
PDCD6
DPY19L4
TCHP
MAD1L1
NPAS4
LIFR
WDR70
MAPK8IP3
TMEM43
CHCHD4
PAIP1
SELENOH
POLR2J
ARHGAP12
ZNF446
BSCL2
ISG20
H4C2
ZNF653
GRAMD2A
SCAP
C5orf24
AURKAIP1
ERGIC2
GPN2
RCE1
LBR
ZNF341
TATDN3
NSL1
FLOT2
H4C9
RNF166
CTU2
C12orf57
SDE2
C7orf26
ZNF770
TAOK2
PMF1-BGLAP
PMF1
AKAP8
THOC5
TRIP13
BRD9
PIGO
NXF1
CSNK1G1
DNAJB12
NCBP3
SDHA
CCDC127
ABCF1
KIF2C
TMEM267
NFAT5
FBXW9
VPS50
HEPACAM2
H2BC12
H2AC12
NME3
SCAMP5
DIDO1
ERCC6L2
SSBP1
CUL9
ECHS1
WDR47
H4C5
MATR3
SMN2
SMN1
SHTN1
TMEM39B
C16orf46
POLR2C
CHD8
EHMT1
BCAP29
PACS1
PCBP2
CCDC138
CRTC2
RAB5B
GRB2
COX20
ASXL1
RUVBL1
EEFSEC
ZDHHC23
NELFA
ORAI3
PURA
MARCHF6
ANKFY1
NEURL2
CTSA
SMDT1
CCDC43
GSTA4
CTNNB1
MTF2
TOMM20
LPCAT1
MYO18A
CCDC86
DSTYK
ZNF511
TUBGCP2
ARMH3
IREB2
TRMT2A
RANBP1
MEMO1
TXN2
GBA
GAA
MTIF2
SPATC1L
TYSND1
ROPN1L
OTUD7B
B4GALT7
PTCD1
CPSF4
RAB3IL1
NOTCH2
MDM4
DCXR
SLC15A4
CDC5L
TCF3
AHRR
RMI1
HNRNPK
TOM1
ANTKMT
NOP2
THEM4
DRG2
EIF3F
PDCL3
ILF2
PRICKLE4
FRS3
NOLC1
DECR2
TUBGCP6
ATXN7L2
RAD9A
EXOC3
MRPS23
TLCD1
C6orf47
EIF2D
NAA80
HYAL3
NDUFB2
CHD1L
PRKAB2
SKA3
MRPL57
CYRIB
PCBP4
TRAF4
NT5C
TAF2
ICMT
KLHL12
RPP40
TAS1R1
NOL9
BRIX1
TRIM37
BHLHE40
NSFL1C
SLC29A1
OSMR
THOC6
HCFC1R1
CLCN7
LRRC59
ZNF286A
TGOLN2
GSTO2
TSFM
MCOLN1
CALM1
JOSD2
CASP2
RNPS1
VEZF1
SNAP47
ZNF76
JMJD4
AFF4
CLPTM1L
CPSF1
TOMM6
ZNF583
CYB561
HASPIN
CSRNP2
DCP1A
CD63
GPX1
SSX2IP
ANKRD13C
LTBR
TDP2
ACOT13
SFXN4
SYT7
GABPB2
WDR74
AKAP1
RSAD1
RBL1
MED1
MAN2C1
SLC50A1
UPF3A
RIPK1
SLC45A4
PABPN1
CCDC130
CEMP1
MADD
AGL
WDR11
SNTB2
AGO3
RABIF
AMZ2
B3GAT3
FAM162A
CCDC58
SUGCT
MPLKIP
FKBP5
TMEM170A
NOC3L
TMEM179B
CIAO3
BAX
FIS1
GADD45A
ATP6V1H
CXorf38
USP21
ATAD2
NOTCH2NLC
WASHC2A
NR4A1
H2BC8
H2AC8
EIF4H
NAA60
MBTPS2
ENDOV
LARP1
FAM156B
H3C8
ENOSF1
DNAJC25-GNG10
DNAJC25
FAM156A
HNRNPA1L2
IRF9
YAP1
GNE
HMGB1
GEMIN7
USPL1
SLC52A2
FBXL6
DAGLA
PLEKHG2
CHAF1A
BRWD1
TIPIN
ERBB3
INPP5K
RASA4B
KAT6A
CEP350
YARS1
S100PBP
PGAM5
SIRT4
MRPS18C
HELQ
NOC4L
DDX51
KMT2A
SH3BGRL3
ABCF3
TONSL
HNRNPH3
GPRC5A
HIBADH
PBLD
CAPNS1
WDR62
THAP8
GTF2H2C_2
GTF2H2C
AMACR
RRP1
SCAND1
PPP6C
CCDC24
SRA1
FOXJ3
TAB3
MRPL28
VPS4A
MVB12A
PRDX1
DDX56
QRICH1
RRP8
ILK
TMEM68
TGS1
POLG
SGPP1
MLXIP
NOTCH2NLB
STX18
TMEM222
ATXN1L
UCKL1
PPFIA4
TMEM101
DPY19L3
NUP133
NEK2
YOD1
GANAB
MLX
MTA2
RBM4
POP5
PUS7
NADK
SUPT16H
JUND
SMPD1
MRPL12
NTMT1
CLCC1
FOXRED2
TSKU
HELLS
JRK
PPP6R1
ZBTB7A
TBL3
H3C7
TAF10
SEC31A
PIP4K2B
HAX1
FDX2
TRMU
ZNHIT2
JPT2
MROH6
PMM1
DCAF10
KIF21A
CNOT6
SNAP29
PI4KA
TTC17
MET
BANP
C10orf143
PDF
CLK3
NELFB
IPO9
MED23
CBX2
ZYG11A
UHRF2
TAF13
NANOS1
ADAT1
ZNF131
SNX29
TMEM132A
ZFP36L1
ZFX
ZNF581
MTARC1
COX5A
GGA1
ARFGAP3
NAPA
TCTEX1D2
LRRC8D
UBE2J2
SPIRE2
PSMG4
BPTF
AKIRIN1
KCNK1
SRSF4
FAM207A
VCP
COG2
RPP21
TBL1X
HDHD2
TJP1
TJP3
ADGRL1
GTF2A2
RFX1
LUC7L2
SLC24A1
INTS14
PARVA
L3HYPDH
JKAMP
MRM1
ADAMTS10
MKRN2
MRPL58
MLST8
TM7SF3
BICD1
NFYC
PGAP6
CDK5RAP1
ARHGEF5
ZBED5
TRA2B
MRPL3
GALE
GXYLT1
ABCA3
OTULIN
MRPL45
DUS3L
MDP1
CELSR3
TOR1AIP1
ZNF346
DYRK3
NADSYN1
ZNF865
DENND4B
BUD13
CCNT1
PTPN4
B9D1
ZFP1
ATR
MAPK7
AXL
SSH1
FAM228B
SF3B6
TOB2
ADARB1
MED16
ZNF623
MIS18A
PSMA1
IDI1
KPNB1
TULP3
WDR37
ARL6IP1
CSKMT
C11orf98
WDR24
ATAD3A
CIRBP
IMPA1
SLC39A3
ZBED3
ST6GALNAC2
ZCCHC14
ATF7-NPFF
ATF7
TBCB
POLR2I
NTAQ1
EFHC1
LMNB1
TRIM65
DIAPH1
COX19
CNP
MTG1
PNPLA6
ZNF594
USP36
PPM1H
TTI2
GTF2H3
EIF2B1
SRP19
KHSRP
C16orf70
DONSON
GATD3B
GATD3A
SIPA1
BOLA3
ZZZ3
RC3H2
MIEN1
ZFYVE9
DGAT1
CYBC1
TEFM
NUP155
ACAD9
SRCAP
LOC730183
HNRNPUL1
NAA35
MARCHF7
SPSB2
NUTF2
CENPT
SLC44A1
RCCD1
DUS1L
MAK16
ZNF497
SNX24
PKN2
DHX8
KIF27
FBXO4
AGBL2
CZIB
FAM53B
CDC16
SMIM10L1
PRH1-TAS2R14
DNTTIP2
GMPPB
FADS2
ZFP64
POLE4
ACSF3
HSD3B7
NDUFS6
DIP2B
STMN1
ADAMTSL4
VKORC1
TIMELESS
PPP2R1A
PLD6
IBA57
MRI1
TNKS1BP1
NSMCE4A
RGP1
GBA2
SNRPE
CCDC134
SNRPC
H2BC17
H2AC17
BAG2
RABGAP1
SLC25A42
APTX
ZNF584
ACADM
ANKRD40
MRTFB
BNIP1
AKAP10
ZSCAN12
PWWP2A
NIPBL
ZFAND1
TRMT61B
ZNF546
TBK1
IMPDH2
SELENOO
KLC2
GOLGA1
IPO4
PSEN2
DR1
RBM17
NR2C2AP
TUBGCP3
MICALL1
PIMREG
TUSC2
TEDC2
FNBP1
H2BU1
C7orf25
H2AW
FAM118A
SLC35C2
TSR3
GNPTG
CPPED1
FBXO32
ZNF205
RBM12
CPNE1
POLR2J2
ITFG2
IFRD1
ZCCHC4
TMC4
DCAKD
TUT1
ATPAF1
FAM20B
MCUR1
SMIM13
FRA10AC1
CANX
ERLIN2
MBD1
CAMTA2