ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX118692 | mESC derived neural cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◣ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Greb1
Cldn34d
Adgra2
Cdv3
Hivep3
Tmem181a
Rsc1a1
Ube2s
Adgre5
Notch4
Dennd2c
Fubp3
Xylb
Tomm5
Olfr806
Pdgfrb
Cdx1
Socs3
Srp14
Mafa
Ccdc92b
Fitm2
Cmip
Oxnad1
Dph3
Plbd2
Mreg
Abhd6
Tet2
Tcp11
Ints3
Mkrn1
Slc6a16
Cd37
Btbd16
Oaz2
Zfhx2
Thtpa
Ect2
Gpx4
Zdhhc18
Aqp3
Mcl1
Hoxb13
Fndc3b
Ncmap
Lag3
Bbs1
Wwox
Xbp1
Adcy5
Slc43a1
Cidea
Camk2n1
Cnn3
Itga3
1700037H04Rik
Itga5
Brwd1
Tmem231
Gabarapl2
Kcnk5
Nphs1
Kirrel2
Mobp
Aadacl2fm1
Tal2
Kazn
Tm7sf3
Med21
Hrob
Gstp2
Gstp1
Nkx2-6
Bcat2
Hsd17b14
Wdtc1
Cdk15
Fbxo44
Fbxo2
Fbxo6
Thrsp
Pmepa1
Xpo1
Uri1
Bmerb1
Ifitm7
Ksr1
Nkg7
Cldnd2
Lim2
Gm38999
Rplp2
Slc25a22
Pidd1
Zfp740
Csad
Fbxw4
Slc7a15
Baz1b
Tbl1xr1
Srrm3
Capns1
Mettl16
Tm2d2
Adam9
Rusc1
Prdm14
E030030I06Rik
Plekha7
Spc25
G6pc2
Mtnr1a
Ndufb8
Sec31b
Tmem63c
Mtg2
Vmn2r102
Ube2o
Setd4
Cbr1
Hoxa1
Hexb
Ttpal
Agpat5
Kpna1
Enpp4
Dhrs3
Dcaf4
Icam1
Cic
Gtpbp4
Car6
Bcar1
Lasp1
Dppa2
Caln1
Gpcpd1
Grtp1
Rarg
Rad23a
Calr
Tnfsfm13
Tnfsf12
Mmp9
Mmgt2
Lrrc75a
Slc15a1
Efnb3
Tmem191c
Abcf3
Atp6v0d1
Agrp
Tmed10
Atp2a2
Zfp532
Insyn1
Rbks
Babam2
Cfap74
Cyp26a1
Pigz
Abl1
Slc10a5
Impa1
Mis18bp1
Nodal
Il17c
Snai1
Poc1b
Galnt4
Prc1
Abr
Megf8
Tmem145
Mtf2
Thap4
Psmb7
Ankrd44
Dsg2
Ttll3
Ppp3ca
Acot7
Zfyve28
Cfap99
Psma6
Plekhb1
Slc4a1
S1pr2
Blmh
Hspbp1
Brsk1
Mok
Tmem127
Ciao1
Mib2
Spred2
Tecpr1
Smyd2
Prss27
Msi1
Eif4a2
Galnt2
H2-Bl
Ccdc80
Kat7
Sepsecs
Dusp9
Msgn1
Mdga1
Resf1
Tmco2
Gm973
Rxfp4
Rreb1
Dock1
Trim7
Cnot8
Nme1
Megf11
Csf2ra
Hbegf
Slc4a9
Spty2d1
Ino80c
Trmt1
Nacc1
Plxdc1
Irf1
Smagp
Letmd1
Rhox11
Zfp827
Prmt8
Dedd
Pbld2
Hnrnph3
Serpinf2
Rcc1
Pdlim1
Hspb8
Znrf1
Wdr59
Krt79
Ryr1
Rasgrp4
Atg14
Acp6
Vps37d
Dnajc30
Bud23
Camk1
Col9a2
Txndc11
Gm525
Dgke
Cox7a2l
Tatdn2
Slc14a2
Gzmk
Prdx6
H2ap
H2al3
Tmem165
Smim38
Pik3ip1
Vars
D17H6S56E-5
Bmt2
Kank3
Il3ra
Stk33
Ube3c
Cnnm2
Ccdc33
Gadd45b
Znfx1
Ppdpf
Cspg5
Elavl3
Dnase2b
Pspn
Clpp
Alkbh7
Evi5
Shld1
Fam131c
Srsf1
Sympk
Capn3
Foxa3
Crtap
Usp28
Egr4
Prdm10
Gm7244
Pld2
Pibf1
Dis3
Nek2
Septin11
Capza2
Nudt4
Myrf
Lefty1
Slc22a21
Ucp2
Sec22c
Ss18l2
Trim17
H3f4
Klhl20
Ankrd45
Amacr
Rusc2
Ppp1r15b
C1qc
C1qa
Angptl8
Dock6
Ago2
Tyrobp
Tent5c
Itpk1
Gm36210
Nudt1
Phc1
Msh6
Ubr4
Rnf19b
Drd4
Sct
Olfr352
Mmp11
Gm867
Chchd10
Fxn
Gprc5c
Med14
Fam160b1
4921507P07Rik
Ankrd28
Gipc1
Ptger1
Jund
Iqcn
Ccdc102a
Adgrg5
Zcchc10
Zbtb34
Dse
2410137M14Rik
Znrd1as
Tex14
Aebp2
Dop1b
Bcl2a1d
Cpt1a
Cyp11a1
Ccdc120
Cfl2
Twf2
Tnnt1
Tnni3
Map7
Ilrun
Phf5a
Aco2
Ruvbl2
Gys1
Epp13
Psmg4
Eif4h
Kdm6b
Olfm1
Pif1
Dpp4
Acp5
Tmem211
Ifngr1
Rnf13
Golga7
Nsd1
Ghdc
Hcrt
Ticrr
Gga1
Scyl1
Cox8c
Efcc1
1810020O05Rik
St6galnac2
Angel2
Zfp316
Rps6kc1
Tmem116
Erp29
Lipe
Slc39a7
Rxrb
H2-Ke6
Col11a2
Ppfia1
Rhobtb3
Spen
Rnf216
Nupr1l
4921517D22Rik
Sertad2
Rfc5
Marcks
Zfp438
Jup
Zyg11a
Plcd1
Sgk1
Kdm3b
Best3
Oasl1
Men1
Map4k2
Fam20c
Ptprf
Pcsk1n
Eras
Psmd7
Stk35
Gabbr1
Lrrc2
1810010H24Rik
Vwa8
Nnmt
Pcdh20
Sp8
Nectin2
Kcnk4
Gpr137
Bad
Catsperz
Slc29a1
Mymx
Ctsb
Ide
Rnf213
Pold2
Tmem64
Gm3558
Otof
Fam166c
Trpm3
Zfp143
Pyroxd1
Llgl2
1700067K01Rik
Misp3
Zfp839
Agpat2
Nol11
Katnal2
Cdsn
Boc
Slc25a36
Crlf2
Tmem184b
Trim56
Ank1
Coa7
Osbpl1a
Vps35l
Rfx2
Trex1
Shisa5
Hspb7
Clcnkb
Gipc2
Bcl2a1a
Rnf169
Clgn
Zbtb7a
Prss50
Prss46
Tnrc18
Srgn
Mllt6
Cox7a1
Lman1
Muc1
Agpat3
Il31ra
Zfp523
Gpr20
Map1b
Fads1
Septin4
Ubxn2a
Atad2b
Ltbp3
Syne1
Kcnh3
Sema4g
Fam171b
Ahi1
Ptgir
Ttc24
Iqgap3
Itch
Dag1
Usp45
Tstd3
Wnt2b
St6galnac6
Erich3
Ctsd
S100g
Dcp2
Rasl10b
Colca2
Stat4
Crybb1
Cryba4
Vmn2r22
Arhgap19
Ggt6
Cmc1
Nfyb
Jarid2
Zfp979
Plekhf2
Irf5
Bcl11b
Rasa4
Spint4
Ptprs
Smarca5
Rab5c
Cfap161
Rarb
Slc17a7
Rnf125
Pth2
Gfy
Hoxc4
Uqcrc1
Sycp3
Arih2
Slc25a20
Kng2
Hmgxb4
Tom1
Ninj2
Wsb2
Rgl2
Wdr46
Pfdn6
Rtp2
Foxp1
Arf4
Cacng6
Smyd4
Rpa1
Zfp600
Chrna5
Fbxo46
Bhmg1
Trpv3
Adora2a
Arhgap35
Arfgef2
Gcgr
Spata33
Chmp1a
Twsg1
Pltp
Setmar
Dlgap3
Rpl27
Wdr6
Ncor1
H2-Q8
H2-Q6
Slc12a7
Gca
Sytl1
Slc25a13
Ccdc34
Cltb
Bcl2a1b
Zp3
Ssc4d
Trmt61a
Ckb
Rab37
Uck1
Pcmtd1
Sbno2
Slx1b
Bola2
Eif2b3
Ncapd2
Mrpl51
Coro1a
Gm3696
Tspan17
Arl6ip5
Uba3
Sin3a
Gabpa
Atp5j
Hddc2
Taf13
Psmd12
Pitpnc1
Pbx2
Gpsm3
Ager
Myl9
Tsc22d4
Nyap1
Ttc7b
Prss52
Prss51
Scn5a
H2-Q9
H2-Q7
Phc2
Cdc42ep3
Ankrd39
Doc2b
Ankrd23
Stk11
Zfp148
Tdgf1
Gnb5
Lrmp
Tet1
Gm45915
Zbtb25
Zbtb1
Plekha8
Fkbp14
Fbxo17
Trim67
Zfp707
Ccdc166
Ptpmt1
Ammecr1l
Ceacam16
Tmem51
Stra8
Icosl
Wdr91
Spire2
Spata25
Neurl2
Ctsa
Zswim1
Txnip
Lrrc10b
Dhx32
Zfp988
Myo1b
Rnaseh1
Heyl
Slamf8
Lyg2
Nr6a1
Olfml2a
Dcaf12
Pin1
Mrs2
Cd209a
B3gnt7
Kat6b
Abcc5
Fbxo15
Pdcl3
Sirt3
Psmd13
Ap3s2
Gatad2a
Trim26
Gpa33
Dusp27
Grasp
Slc2a9
Zdbf2
Fem1c
Gpr1
Abcg4
P2rx1
Oas1h
Oas1f
Meiob
Cdc42ep1
Lgals2
Gm3411
Gm16381
Mroh6
Rab10
Pml
Mtch2
Gcnt2
Cystm1
Tafa4
Ccin
Ggact
Mrpl37
Cyb5rl
Smyd1
Krcc1
Zfp990
Foxa1
Sub1
Rsph3b
Bhlha15
Zfp280b
Jmy
Zfp787
Nat8f2
Adamts15
Tefm
Etnk2
Zfp710
Hck
Tcirg1
Ndufs8
Tcf7l2
Proc
2510009E07Rik
Septin1
Ppp2r5e
Zfp553
Pmaip1
Extl1
Olfr222
Adnp
Hus1b
Calr4
Jam2
Zfp980
Myo1g
Tspan9
Pdss1
Smim20
Slc28a1
Cln8
Pcnt
2610028H24Rik
2310009B15Rik
Rita1
Ddx54
Tmem60
Phtf2
Erf
Rara
Zfp985
Zscan4f
Fem1al
Ube2l6
Cacnb3
Gpr157
Gtf3a
Mbd6
Ddit3
Arhgef10
Akap7
Fam71e1
Emc10
Srgap3
Tfrc
Stra6
U2surp
Ptcd3
Polr1a
Ifna13
Aldh9a1
Pramel32
Rpgrip1
Hps5
Gtf2h1
Serpinh1
Dhcr24
Zscan4c
Islr2
Ripply2
Cyb5r4
Dennd10
Sall2
Col27a1
Slit3
Oprk1
Tmem205
Rab3d
Ccdc159
Dppa5a
Dysf
Ooep
Grip2
Taf4
Agtrap
B230307C23Rik
Ado
Tmem135
Slc25a51
Gm5796
Phrf1
Nup205
Fzd5
Phf11d
Prelid3b
Atp5e
Abhd17c
Ppm1b
Trem2
Treml1
Satb1
Tmeff1
Bik
Gm12169
Sspn
Chd9
Tuba1b
Cnot4
Man1b1
Oas1g
Grin1
Rpl17
BC031181
Phldb3
Uqcr11
Mbd3
Zswim3
Acot8
Ttc25
Cdc42bpb
Srrm1
Tomm40
Zfp992
Dnah7b
Abcc4
Cdk1
Polr1b
Tmco6
Ndufa2
Ik
Cfap20dc
Spef1
Fam205a1
Vsir
Upp1
Bcan
Olfr859
Asap3
Hoxb4
Hoxb5
Rwdd2b
Ltn1
Ptges
Zc3h12a
Eif4ebp2
Slc39a2
Pgbd5
Abhd11
Rhoc
Hsp90aa1
Fhad1
Prrt3
Cxxc5
Slc35g2
Gdf1
Cers1
Guf1
Actn4
Tmem235
Crybg2
Ccdc88b
Zfp112
Pick1
Nfatc2ip
Ldc1
Ccdc171
Ier2
Otop2
Ush1g
Otop3
Rock2
Tnfrsf19
Arvcf
Tmem79
Smg5
Alpl
Rbpj
Siah3
Sema5b
Ubac2
Glis2
Lcor
Pnpla5
Fam25c
Ptpdc1
Ppp2r2d
Fam81a
Smarcd1
Mapk1ip1
Wfdc3
Dnttip1
Apobec2
Sstr3
Suclg2
Tbcel
Ffar3
Ino80d
Hspa8
Fam32a
Cib3
Copz1
Smim8
Igfbp2
Mllt1
Sugt1
D830030K20Rik
Ebna1bp2
Cfap57
Hmgcl
Lama3
Pld3
2310022A10Rik
Chpt1
Exosc8
Alg5
Aldoart2
Slc38a4
Tacc1
Ptch2
Plet1
Nr1h5
Lrrk2
I830077J02Rik
Edn1
Calhm6
Adgrd1
Itpr1
Dnmt3a
Myl4
Cdc27
Ptar1
Mcrs1
Hpse
Rai1
Caskin1
Nags
Acvr1b
Spag9
Yap1
Mlst8
Bricd5
Gm19428
Cldn14
Sncg
Mmrn2
Ubap1
Kifc3
Bphl
Timm8b
Sdhd
Zfp987
Foxn4
Hmg20b
Zfp819
Gipc3
Pigr
Anxa11
BC028528
Ciart
Aph1a
Tctex1d4
Plk3
Btbd19
Mdm4
Spaca6
Tfr2
Lyrm1
Dcun1d3
Timp3
Prr5
Eloc
Fgr
Homer3
Rbp7
Sema4d
Mdfi
Fanci
Pacsin2
Isg15
Agrn
Rhbdl1
Fam170b
Wdr24
Pcyox1l
Stub1