ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX236483 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◣ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Gtf3c6
Eapp
Drg2
Ube2j2
H2bc4
H2ac6
Dcp1a
Sfi1
H3c6
Ap1g1
Mrpl39
Tti2
H4c14
Txnip
H4c4
H1f3
Rbm17
H2bc12
H2ac12
H4c18
Dnttip2
H4c8
Cacng2
Agk
Alyref2
Rdm1
Atp6v1h
H2bc18
H3c13
Mrpl44
H2ax
Tmem270
Fyco1
Smg8
Mymx
Hdhd3
Sema4b
Ccdc83
H1f2
Ndufs7
H2ac19
H2ac18
Trp53rkb
Scnn1g
Mrpl1
Raf1
Ep400
Dmap1
Ndufc2
Rbpj
Tex14
Cilk1
H2bc8
H2ac8
Ints12
Gstcd
Npas4
H3c14
H3c15
Utp3
Rps19bp1
Pafah2
Cryzl2
H4c9
Eif4e2
Ndufaf5
Esf1
Klhl20
Hsd17b11
Ints10
Tph2
Sf3a3
Nme1
Ap3s2
Pipox
Megf8
Psmd2
Spp1
Nuf2
Lrrc59
Sntb2
Med23
Rnf125
H4c3
Ndufs3
Kbtbd4
Ppil3
Nif3l1
Spats1
Cpsf1
Irak2
Fam149b
Ecd
Mtf2
Palb2
Dctn5
Tnrc6b
Ints1
Ccdc107
Cltc
H4c6
Scrib
Gins3
Opa1
Trmt44
Nsa2
Gfm2
Ppp1r10
Tpm1
H4c11
Zfp609
Rab33b
Rbm34
Bcl2l1
Vps28
Ncam1
Dhx16
1190007I07Rik
Dhx8
Poldip3
Cep85
Slc33a1
Vps51
Mlf2
Rint1
Adnp
Mrpl21
Ighmbp2
Dhx30
Mrps21
Sox2
Etl4
Chgb
Ndufaf1
Zyg11a
Rilp
Rubcn
Fyttd1
Sde2
Aaas
H3c3
Tmem101
Snrpe
Grcc10
Ppp1r11
H2bc3
Lyzl6
Cdkn2aipnl
Snrpc
H2bc14
Chrnb2
Zbtb37
Hmgxb4
Cacnb3
Atp5k
Mettl25
Ccdc59
Edc4
Atad2b
H2bc15
H2ac15
Cdk5rap1
Stx18
Ttc25
Zfp638
Polr2j
Tafa5
Rptor
Mterf1b
Psmg3
Gpatch8
Slc39a3
Pigc
4930558K02Rik
Mrps18c
Helq
Svop
H4c12
Trp53rka
Trmu
Gjc1
Eps15l1
Det1
Msh4
Mtg1
Ttc14
Ddx55
Tubg1
Retreg3
Zfp13
Top1mt
Atg16l1
Ddx56
Nol10
Wdr36
Adprhl2
Mrps15
Cdiptos
Cdipt
Tex19.1
Ddb1
Cdc16
Fam169a
H2bc6
Arf4
Lrp6
Cipc
Atp6v0d1
Golga7b
H3c7
H2bc9
Zcwpw2
Azi2
Mrps28
Ppp1ccb
Ppp1cc
Surf6
Chd8
Yipf2
Timm29
Ints5
Snx18
Sec22b
Ybey
Mcm3ap
Zmym1
Pigm
Abca14
Znfx1
Ttc4
H2bc11
H2ac11
Cast
Disp3
Rac3
Ndufb8
Ndufa9
Srp68
Fbxl22
Tsfm
Triml2
Morf4l1
Tbcd
Rpl27
Usp30
Npy1r
H2bc13
H2ac13
Rad54l2
Tchp
Zfp532
Necap1
Ciao3
H4c17
Dffb
Cep104
Sphk2
Rpl18
Rrm1
Spry1
Anapc5
Nup54
Dus1l
Xrcc5
Rabggta
Josd2
Cenpp
Fitm2
Chordc1
Sod2
Taco1
Comtd1
Pou2f2
Nceh1
Ephb1
Paxip1
Nutf2
B4galt7
Kbtbd6
Faf1
Arhgef12
Ccdc88a
Rpl5
Ints4
Zfp113
Ropn1l
Ift46
Rbm28
Wdr18
Trir
Gne
Tars2
Naa35
Psmd3
Pex3
Adat2
Slc36a1
Tob2
Dus2
Ddx28
Htt
Dusp12
Mc5r
Epn1
Rapgef1
Abca3
Abca17
Gpx1
Phactr4
Def6
Gpr19
Mrps33
Mnat1
Zfp710
Nanog
H4bc24
H2bc23
H2ac24
H2ac23
Gabpb2
Med27
Sdad1
Mrpl35
Zc3hc1
Man2b2
Med4
Sec13
Mtmr6
Lsg1
H4f16
Slc9a1
Tmed9
Hint3
Acp6
A930018P22Rik
Tmem95
L1td1
Errfi1
Rab1a
Ing1
Dnajc11
Ccdc174
Pvr
Gm5544
Banp
Ssbp1
Bms1
Acp2
Snrpd1
Fbxl15
Tomm7
Uqcrc1
Gm3448
Gm3417
9030025P20Rik
Kctd5
Dpy19l4
Jtb
Alkbh7
Galk2
Cops2
Trip4
Vps18
Gstm1
Pomt1
Tdgf1
Alkbh2
Sar1b
Eif3g
Afmid
Tk1
Liph
Pigu
Timm50
Hemk1
Mterf4
Dtd1
Esyt2
Htra2
Aup1
Get1
Snw1
Top3b
Gatad2b
Cnot10
Ift22
Kdm5b
Parl
Rhot1
Stx16
Riok1
Cage1
Eif5a
Ndufv1
Gemin2
1700008O03Rik
Ccdc110
Rpl3
Dync1i2
Piezo1
Krr1
Tmem242
Fntb
Wdr74
Mrpl58
Eif2b3
Dstyk
H4c1
Fndc3b
2700062C07Rik
Pxk
Tmem208
Lrrc29
Zfp981
Mtmr10
Eps15
Exosc6
Cox7a2
Bloc1s4
B4galt3
Wdr24
Ppp6c
Arl8b
Poglut3
Fra10ac1
Dennd6b
Cwc25
Kbtbd7
Smim8
Rtca
Rnf216
Thumpd3
Vdac1
Klhdc4
Zranb1
Cdk20
Ints3
Cr1l
Atad3a
Plekhm3
Naxe
Kdm1a
Pdss1
Cacng3
Psmd7
Mterf1a
Clk4
BC049762
Ccar1
Chd9
Flnb
Aacs
Zscan25
Mphosph10
Mcee
Mta2
Napg
Zc3h10
H2bc1
H2ac1
Zbtb40
Srrt
Zscan22
Atp5g3
Pfdn5
Ddx20
Sppl2a
Nacc1
Rpl38
Caprin2
Ppip5k2
Gin1
Wdr90
Psmf1
Ubiad1
H1f1
Pdss2
Arl14ep
Cct8
Dhx33
Mrps2
Ino80b
Gemin6
Utp6
Epb41l4a
Kmt2d
Aftph
Polr1b
Ptpru
R3hcc1
Bloc1s5
Pycard
Dctpp1
Dact3
Wtap
Isy1
Hus1
Med11
Stil
Zscan12
Usp37
Cnot9
Cnmd
Atp5g2
Mif
H2bc22
H2ac22
Rnf187
Scfd1
Msra
Sf3b2
2210016L21Rik
Psmd6
Vps33a
Zfp660
Zcchc4
Plekhb1
Elf3
Mrpl30
Mitd1
Plpp5
H3c2
Nfat5
Uspl1
Serpina3i
Dhrs7b
Pcbp2
Mkrn2
Asah1
Plekhf2
Ruvbl1
Zfp207
Aasdh
Snrpd3
Gucd1
Dcaf10
Anapc10
Abce1
Fmnl3
Pex12
Them6
Cirbp
Luc7l
Rbl2
Snrnp27
Ikzf5
Acadsb
Nvl
Ndufc1
Polq
Slc39a6
Elp2
9530077C05Rik
Anln
Ilf2
Map2k7
Tnpo3
Mrps31
Psmc2
Otud7b
Rbsn
Specc1
Pstk
Ppp1r8
Hif3a
Ogt
Inhbe
Ifitm1
Csnk1a1
Amdhd2
Ankrd40
Dido1
Champ1
Gid8
Rrp1
Rrp15
Tefm
Hif1an
Impdh2
Clcn3
Pgghg
Zfp738
Bag6
Zfp141
Slc43a1
Phf12
Ubxn1
Gtf3c3
Tmem115
Btbd8
Ptpa
Crat
Orc5
Nsmce4a
Mib2
H1f5
Ptcd1
Cpsf4
Arpc3
Pld2
Etfbkmt
Mcm5
Ralgapb
Nufip2
5730455P16Rik
Timm44
Cpped1
Commd2
Parp2
Mob3c
Gaa
Tmprss9
Hvcn1
Gspt1
Srp19
Taf5
Haspin
Psmg1
Cradd
Nob1
Irf9
Thoc6
Hcfc1r1
Ctc1
Ints6
Stat3
Pnp
Ndufs4
Cenps
Tmed5
Ccdc18
Tma16
Espl1
Tfdp2
Myg1
Ipo8
Wdr31
Tmed4
Stmn3
Neurod4
Kcnh1
Fstl5
Fgf4
Dusp13
Dstn
Fem1b
Mrpl12
Rbm4b
Phc1
Nufip1
Gpalpp1
Zmynd19
Dgka
Calm2
Tab1
Kat6a
Pxn
Mob1b
Rfesd
Nudt15
Stk11
Sidt2
Vamp1
Flywch1
Mrpl34
Rps3a1
Hspa4
Ist1
Rnf123
Dynlt1b
Tnpo1
Pnisr
Rps2
Nip7
Cog8
H3c8
Micu2
Wdr61
Lrwd1
Alkbh4
Ypel5
Mcoln1
E2f3
Ddost
Fbxo46
Sumf1
Vps13d
Appl2
Fcf1
Arel1
Ldlr
Atf6b
Cluh
Zfp668
Zfp646
Timm22
Adipor2
Cox17
Faap20
Cds2
Gtf2h2
Saal1
Ppm1f
Commd4
Chek1
Rabl6
Mff
Pold3
Ccny
Golga1
Ppih
Ccdc71
Ssrp1
Thoc5
Ints7
Dtl
Atp6v0a1
Aar2
Dnajc2
Ddx24
Hook2
Cntnap2
Adra2b
Ranbp2
Med17
Thoc1
Yars
S100pbp
Slc35b2
Zfp770
Ndufa3
Camk1d
Elovl6
H2bc21
H2ac21
H2ac20
Pemt
Hinfp
Vps11
Mfsd10
Lsm11
Sh2b1
Sumf2
Xylb
Tspyl4
Rph3a
Pls1
Zfand5
Nabp1
Map2k2
Brca2
Rnf115
Polr3c
Anxa7
BC003965
Impa2
Commd10
Tfb2m
Cnst
Zfp106
Selenom
Snx17
Eif2b4
Gm3435
Chchd2
Pigq
Btrc
Dcps
Vamp4
Mrpl52
Ndufa5
Asb15
Asxl2
Zfp658
Tmem132a
Nomo1
Adprhl1
Tcte3
Ermard
Dgat1
Mmadhc
Adrm1
Dguok
Smn1
Rad50
Tcf7l1
LTO1
Atic
Tnfrsf21
Prss48
Epb41l4b
Tmem11
Nup153
Ppp4r3a
Lsm6
Pds5b
Cfap298
Dbnl
Hspa14
Cdnf
Lrig2
Ski
Haus6
Rpp14
Htd2
Slc35b1
Cnpy1
Mcl1
BC005537
Nop14
Grk4
Cops8
Map2k1
Sh3glb1
C1qbp
Zfp280d
Prrg2
Nosip
Fbxl13
Armc10
Utp25
Mrps14
Rps23rg1
Gtf2b
Cct4
Kif2c
Smarca5
Tbrg1
4833420G17Rik
Brf1
Tfrc
Spg7
Ccp110
Rangap1
Zfp560
Rrp9
Parp3
Lrp1
Trpm5
Pcdhga12
Pcca
Micalcl
Amigo3
2410004P03Rik
H1f4
Gm13285
Gm13287
Zdhhc1
Gm13275
Rtcb
Slc35b4
Wdr76
Mfap1a
Dhx32
Acy1
Marchf4
Calcoco1
Actr3
Pcnp
Rpl9
Lias
Hnrnpa3
Snrpa1
Lamp1
Wbp2
Prkab1
Agfg1
Rab29
Pold1
Tnfrsf22
Slx1b
Mrpl38
Bola2
Ier2
Pprc1
Sf3b1
Dnajc16
Nelfa
Hax1
Ccdc57
Thumpd2
Mettl3
Zfp512
Fam3c
Kptn
Exosc4
Map3k3
Zfp94
Prrg4
Tvp23a
Ltbp2
Klhl34
Htr5a
Clec12a
Casz1
Atg16l2
Rbm33
Ints2
Polk
Cert1
Api5
Cnot11
Rnf141
Pex14
Tcf4
Tube1
Fam229b
Rfc2
Slc12a9
Npff
Mtnr1a
Mllt6
Kmt5b
Adpgk
St3gal2
Tmem214
Wrap53
Trp53
Tmem30a
Ddx47
Mbd3
Eef1akmt4-ece2
Eef1akmt4
Alg3
Sys1
Ccar2
H2bc7
H2ac7
Dtx2
Adck5
Eif3f
Ssna1
Anapc2
Hdgf
U2surp
Pigo
Plaat3
Lmnb1
Serping1
Prpf18
Ppfibp2
Pigz
Ltbp4
Slc35e3
Prdx1
H3c10
Birc2
Arf1
Ifrd2
Ppil4
Topbp1
Tars
Ccdc77
Pdk1
Tox4
Rab2b
Pnpla6
Fktn
Abhd18
Tomm5
Dyrk3
Trappc3
Pkn3
Nrn1l
Izumo2
Bmyc
Spg11
Blmh
Ints13
Fgfr1op2
Pabpc4
Idh1
Kansl3
Tent2
Nop16
Higd2a
Arl2
Uevld
Fan1
Dph1
Ttc37
Arsk
Islr2
Xkr7
Tmem145
Hsd3b7
Disp2
Polr2a
Tuba1b
Tmem39a
Amd2
Amd1
Sgms1
Rpl7l1
Dcaf12
Xpo1
Tex2
Ppif
Dpm2