ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Ccn1
Errfi1
Ifrd1
Egr1
Serpine1
Flnc
Ier2
Actg1
Thbs1
Actb
Nr4a1
Dusp1
Dusp5
Ptgs2
Ubc
Vim
Junb
Mt2
Tpm1
Fos
Dnajb1
Sgk1
Ddit3
Ccn2
Hspa5
Homer1
Btg2
Gadd45g
Mt1
Zyx
Pknox1
Id3
Atf4
Hspa8
Ugdh
Ttc4
Csf1
Jun
Gm13285
Gm13290
Gm13289
Gm13288
Insig1
Gm13279
Gm13278
Btg1
Vcl
Ier3
Vmn2r4
Fn1
Arc
Timp2
Mat2a
Egr3
Prickle1
Tle1
Hmox1
Gtf2i
Zfand5
Gm13276
BC005537
Calm1
Pdlim5
Rubcn
Fyttd1
Ier5
Plk2
Dnaja1
Sf3a3
Mcl1
Ccl7
Palld
Myh9
Med23
Tmsb4x
Slc2a1
Rdm1
Lgals1
Itga5
Tab1
Tob1
Map7d1
Gm3448
Gm3417
Gm3435
Utp14b
Acsl3
Prdx1
Ap1g1
Aaas
Noct
Cav1
Gm13287
Gm13275
Tob2
Smad1
Fyco1
Mtf2
Ddx5
Cep95
Sdc4
Tcte3
Ermard
Oasl1
Hmgcr
Nme1
Mia2
Sqle
H3f3b
F3
Trib1
Cdkn2aipnl
Srxn1
Prkce
Cltc
9030025P20Rik
Arl8b
H3c2
Phlda1
Bod1l
Rps29
Myl12a
Gtf3c3
Mrpl20
Mrps2
Kdm2a
Zfp36
Yap1
1810013L24Rik
Lmna
Blmh
Smo
Fth1
Hexim2
Ifnz
Nipbl
Ctnnb1
Atp2a2
S100a3
Rpl10a
Ankrd40
Ftl1
Id1
Zswim6
Oxct1
Rel
Traf6
Cdc42ep3
Cobll1
Tiparp
Fem1b
Rgl2
Gm13277
Lrp12
Nfat5
Arl14ep
Fosb
Notch2
Ppia
Lrp6
Nrf1
Utp3
Lbh
Fbxo7
Sox9
Rcn2
Ppp1r15a
Plekha4
Ifi211
H3c11
Actr3
H3c6
Foxj3
Frg2f1
Them4
Rtn4
Tpt1
Zfp36l2
Dnajb4
Fubp1
Rpl22l1
Ctnnd1
Drg1
Acap2
Eml4
Dnajc24
Tox4
Rab2b
Csrp2
Eef1a1
Pbld2
Hnrnph3
Azin1
Uspl1
Tcea1
Ccl2
Cul1
Lsm11
Idi1
Tnfrsf12a
Lox
Htra2
Aup1
Snx18
Camk2d
Cldn12
Sesn1
Kansl3
H3c14
H2ac19
H2ac18
Mideas
Chac1
Mrps33
Nipsnap2
Surf6
Cpd
Raf1
Ncbp2
0610012G03Rik
S100a6
Ptbp1
Qser1
H3c4
Sfi1
Baiap2
Actn4
Vamp4
Polr2a
Opa1
Rnft1
Ccnl1
Pds5b
Ppp2cb
Cdkn1a
Ankrd1
Nabp1
Mterf1a
Ccdc88a
Rpl27
Hbegf
4931408C20Rik
H4c3
Fasn
Cipc
Tbp
Ulk2
Dgat1
Pten
Ier5l
Gpatch8
Uvssa
Cacybp
Rap2b
Gm13283
Tnfaip6
Tab2
Atp6v1h
Txnrd1
Rab34
Rps20
Aacs
Mrps31
Rnf11
Atad2b
Naa16
Srsf1
Hnrnph1
Gm13272
Timp1
Ndufs7
H2bc21
H2ac21
H2ac20
Pdia3
Catsper2
Med7
Sec22b
Sh3glb1
H3c15
Eif4a2
Ube2z
Mapkbp1
Agk
Stx18
Slc25a3
Cebpb
H3c7
Galk2
Cops2
Plag1
Chchd7
Fam133b
Hnrnpu
Slc39a13
Lrig2
Medag
Ttc39b
Cbwd1
Rpl3
Ddit4
Mterf1b
Wdr70
Faf1
Wdr25
Wars
Cyp51
Sgcd
Rhob
Pcbp2
Fus
Creb1
Tef
Ythdf2
Ddhd2
Cfl1
Sptan1
Rps15
Ubb
Eci1
Slc25a32
Dcaf13
Rhoq
Uhrf1bp1l
Pex2
Ubtf
Pabpc4
Esyt2
H4f16
H4c18
H4c14
Cxcl1
Eif1
Cwc22
H1f2
H4c4
Klf7
Hnrnpa2b1
Cbx3
H1f4
Eapp
H2bc18
H3c13
Ppp1r10
Arf6
H2bc6
Mrps18b
Nfkbia
Tsc22d1
H4c17
Slc35e3
Poldip3
Fam53c
Raly
Mdm2
Gtf3c6
Cited2
Sp1
Srsf2
Mfsd11
Adamts1
H4c9
H4c8
Tmem267
Zfp36l1
Slc38a2
Rplp0
Cebpd
Sqstm1
Herpud1
Nfkbiz
Cirbp
Pnrc1
H1f3
Unk
Ppp1r12a
Txnip
Flot1
Clcn4
Znfx1
Scrib
H3c10
Tuba1c
Clec2d
Calcoco1
Yeats4
Srsf5
Odc1
Ptp4a1
Efcab2
Pcif1
Tuba1a
Sik1
Rbm39
H2ax
Srsf6
Srsf3
Litaf
H2bc4
H2ac6
Pcbp1
Hsp90aa1
Ddx3x
Slc25a4
Tuba1b
Slc3a2
H4c11
Hsp90ab1
Ints6
Tti2
B2m
Epc1
Rgs2
Cdc42
Nup62
Il4i1b
Atf5
Ywhaz
Serinc3
Tmem123
Banp
Ddx23
Gpx1
Klf6
Zfp869
Rptor
Eif5
Tra2a
Snx17
Eif2b4
Calm2
Gtf2b
Taf4
Hnrnpab
9430015G10Rik
Itgb1
Cnot1
H4c1
Dync1i2
Mrpl44
Cdk12
Kmt2e
Eif4a1
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Kntc1
Emd
Phlda3
Zfp963
Pole4
Zc3h6
Napepld
Sde2
Rsrp1
H2-L
H2-D1
Hmgb2
Amn1
Smim10l1
Tmed2
Zfp1
Tex14
Gapdh
Nfe2l2
H2bc13
H2ac13
Setd5
Hif1a
Chmp4b
Resf1
Crem
Urgcp
Col1a1
H2bc12
H2ac12
Phf12
Ep400
Retsat
Elmod3
Mknk2
Zfp143
Coq10b
Zfp655
Wsb1
Irf1
Pkd1
Prcc
Zfp868
Cxcl5
Gem
H1f0
Rps12
H4c2
H4bc24
H2bc23
H2ac24
H2ac23
Kmt5b
Gls
Ppp1r2
Eif3a
Fam227b
Dtwd1
Eif3c
Zbtb37
Pdss2
Tra2b
Pdlim7
Glul
Slc9a1
Slbp
Adnp
Rheb
Son
Gart
Trib3
Tmsb10
Ctsl
Pprc1
Nufip2
Wnk1
Arrdc2
Rabgef1
Rnf19b
Snx5
Mgme1
Eif4g2
Klf2
Egr2
Mettl25
Ccdc59
Ldha
Usp48
Map2k2
Ywhag
Tmem168
Csrnp2
Fstl1
Bach1
Ptpn2
H2bc15
H2ac15
Chchd2
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
Grcc10
Ptms
Morf4l1
Sp3
Ndel1
G3bp1
Cpeb2
Chrac1
Map1lc3b
Cpsf1
Calr
Zfp866
Piezo1
Sod1
Trp53rkb
Ddx39b
Rock2
Kctd5
Arntl
Pcna
Gsto1
Txnl1
Mbnl1
9530077C05Rik
Dynll1
Zfp207
Ets2
Pim3
Sub1
H3c3
H4c12
Adprh
Arih1
Taf13
H2-K1
Ahnak
Slc39a10
Hipk3
Ubxn1
Nedd8
Gmpr2
Aff4
Hmgn2
Nfyc
Top1
Selenot
Sf3b1
Txn1
Wbp4
Elf1
Eif2b5
Acta2
Gtf2a1
Sepsecs
Pcnp
Sppl2a
Vegfa
Sned1
Adnp2
Hdlbp
Col4a2
Eif4e2
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Gak
Rab5if
Lrrc8a
Vdr
Nsrp1
H2bc9
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Dusp2
Gadd45b
Gadd45a
S100a10
Rab11b
Sf1
Ddx59
Npm1
Mmadhc
Letm2
Sik2
Rnf10
Ep300
Ubald1
Rmi1
Rab1a
Hnrnpk
Phb
Gpx4
Atp6v0c
Ppm1a
Rps3a1
Rfx3
Ptma
Kansl2
Rrn3
Eef2
Cct8
Chmp6
Ranbp2
Rpl17
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Btaf1
Rabl6
Ccng1
Tut7
Polr2m
Ppp6c
Pnp
Sharpin
Maf1
Dpy19l4
Cct2
Spindoc
Scaf1
Oat
Frmd6
Rpl41
Fosl2
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Paxip1
Tcf25
Gmfb
Brwd1
Arf4
Ufl1
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fbxl3
Tbcd
Rab7
Rfc4
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Uhmk1
Ddb1
Zcwpw2
Azi2
Ndufs4
Ankrd11
Pigl
Ncor1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Rps8
Jpt1
Rdh14
Dusp11
Adpgk
Ube2j2
Arl15
Irs2
Trmt44
Tubb4b
Gstp1
Pigq
Rpl5
Srrm2
Luc7l
Ctdp1
Chka
Socs3
Smg5
Hspa9
Secisbp2l
H3f3a
Sec62
Phf20l1
Knl1
Tmem87b
Rab33b
Mmaa
Ncln
Crebl2
Cct4
Stau1
Prnp
Prn
Ppp1ccb
Ppp1cc
Cotl1
Amdhd2
Rps6
Nubp1
N4bp2l2
Mrpl39
Hmgn1
Trir
Tsnaxip1
Rnf34
Ranbp10
Cnbp
Serbp1
Rprd2
Rplp1
Jund
Ccnt1
Fam43a
Saraf
Aven
Ttc41
Hsp90b1
Lrrc59
Ube2d3
Crtc2
Relb
Anapc5
Ing1
Trmo
Rraga
Ndufa9
H2bc8
H2ac8
Sun2
Ndufaf5
Esf1
Ero1a
Fitm2
Usp53
Tbc1d13
Rpl38
Prkar1a
Kat6a
Twf1
Klhl24
Atf6
Ilf2
Cald1
Atp5g2
Rabggtb
Pitpna
Pkm
Atg10
Rbl2
Alyref2
Zdhhc1
Gas1
Tubb6
Fbxl18
Gmeb2
Sugct
Mplkip
Plec
Atp5g3
Zfp706
Tpm4
Rras
Bcl7b
Aff1
Copb1
Dnajb12
Zfp644
Rad54l2
Nsfl1c
Flcn
Map2k4
Trdmt1
Pdcd7
Tada3
Rpl23
Arpc4
Washc4
Rbm3
G3bp2
Eprs
Adrm1
Arl4d
Ube2h
Hnrnpdl
Kif2c
Med6
Birc6
Atp5o
Cd164
Mthfd2
Caprin1
Arf1
Serinc1
Ndufb8
Rpl13
Mylip
Slc16a1
Rbbp6
Arl2bp
Malsu1
Tm9sf3
Peli1
Tmem248
Cpsf6
Rgl1
Arpc5
Ube3b
Rbm33
Kctd10
Mapk1ip1l
Gspt1
Ankrd17
Smg8
Zc3h11a
Zbed6
St3gal2
Dennd6a
Ndufs3
Kbtbd4
Srp19
Gatb
Dip2b
Usp16
Pafah1b2
Zmat1
Pomp
Bclaf1
Drg2
Krr1
Hnrnpc
Degs1
Rab21
Polg2
Ccdc107
Nagk
Ube2l3
Pskh1
Slc12a4
Trim39
Tmf1
Nsun6
Arl5b
AW549877
Slc7a1
Csgalnact2
Terf2
Zfp119b
Tpp2
Kpnb1
Get4
Vamp2
Susd6
Rbm17
Oaz1
Lima1
E4f1
Mapk1
Csrnp1
Lnpep
Vdac2
Ifrd2
Pdk4
Ddx17
Wtap
Etf1
Aasdh
Snrpd3
Niban2
Gucd1
Cd248
Snrpc
Enc1
Frs2
Mff
Dhx33
Taf1d
Nptn
4931406C07Rik
Lrrc58
Btrc
Usp38
Tmem39a
Ell2
Tardbp
Birc3
Txndc11
Gnas
Bud13
Matr3
Fscn1
Ppp2r3a
Cstf3
Ahctf1
Marf1
Srcap
Lcn2
Bcl2l13
Slc7a5
Trp53inp1
Rab43
Pigu
Srek1
Ube2v2
Hnrnpm
N6amt1
Mmp2
Rpl18a
Ppp2ca
Lemd2
Seh1l
Tax1bp1
Pold3
Cenps
Ssbp1
Mif
Caprin2
Tmed5
Nars
Dynll2
Ccdc18
Aars
Dnttip2
Dhx16
2610001J05Rik
Tmed10
Tm2d1
Rpl10
Smarca4