ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735282 | Unclassified
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◣ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Fyco1
Chac1
Calcoco1
Ddx23
9430015G10Rik
Scrib
Phf12
Sspn
Cotl1
Prcc
Nr4a1
Crtc2
Fbxl18
Nop14
Grk4
Pprc1
Kif2c
Ncln
Dusp2
Ap2m1
Usp48
Hsph1
Hspa5
Sharpin
Maf1
Vmn2r4
Htra2
Aup1
Banp
Ccl1
Tnf
Mrpl19
Dync1i2
Usp5
Cdca3
Snx17
Eif2b4
Dhx33
Clpb
Phlda1
Mtg1
Proser1
Nhlrc3
Phb
Fastkd1
Chmp4b
Unk
Tmed2
Psat1
Arl14ep
Il2
Krr1
Ifrd2
Rptor
Mrpl44
Cpsf1
Naa38
Cyb5d1
Nedd8
Gmpr2
Tmem101
B4galt7
Nabp1
Trp53rkb
Rcc1l
Wdr70
Dffb
Cep104
St3gal2
Clptm1l
Cnot1
Mrpl39
Sphk2
Rpl18
Chchd6
Rpl3
Sepsecs
Mrpl12
Timm13
Phf20l1
Atp5o
Rpia
Prmt6
C87436
Ap1g1
Gtf3c6
Nprl2
Cyb561d2
Bicd2
Sympk
Foxa3
Hspa8
5730455P16Rik
Cwc22
Poldip3
N4bp2l2
Stk25
Btrc
Slc35b4
Actr10
Opa1
Alkbh8
Max
Eapp
Plaa
Herpud1
Med6
Pigq
Mmachc
Ccdc163
Chmp6
Rdh14
H4c14
Gatb
Vrk1
Atf6
R3hcc1l
Ndufc2
Ankle2
Jak2
Odc1
Pigu
Rel
Phf13
Nup153
Foxj3
Frg2f1
Mrpl20
Zfyve19
Dnajc17
Ncbp2
0610012G03Rik
Trip4
Usp31
Mrpl1
Ssrp1
Ormdl3
Zfp369
Scaf1
Tbcd
Ube3c
Zfp189
Mrpl50
Katnal1
Trib3
Tmem115
Smarca4
Tex14
Dcp1a
Crebl2
Guf1
Gsk3a
Secisbp2
Commd9
Ap5s1
Ctu1
Fam227b
Dtwd1
Rbl2
Tyw3
Cryz
Sec61a1
Mapkapk5
Pemt
Eef1a1
Nme1
Mrpl21
Ighmbp2
Mff
Acp2
Invs
Erp44
Pfdn5
Clec16a
Abcb8
Zfp637
Slc7a11
Kmt2d
Tmem214
Dcps
Ube2j2
Atg101
Wdr36
Marchf5
Cpeb3
Ptp4a2
Rps20
Tmed9
Zfp36l1
Capn15
Psmd7
Snx27
Cstf1
Aurka
Ccp110
Tcof1
Lrrc59
Tspan4
Polr2l
Tmem267
Map1lc3b
Gid4
Rsad1
Rabac1
Stau1
Med27
Rexo2
Rad23b
Dus1l
Wdr25
Wars
Ppp2r5b
Srp19
Uqcrh
Lrrc41
Pabpc1
Gtf3c3
Arid1a
H3c14
H3c15
H2ac19
H2ac18
Psmb2
Cnot2
Psmb5
Zbtb37
Pcbp1
Snw1
Dhx16
Mrps33
Ncbp3
Get1
Slc25a32
Dcaf13
Eefsec
Ndufb2
Top3b
Mrm3
Glod4
Antkmt
Rhot1
Asns
Rpp30
Gtpbp2
Zmat5
Uqcr10
Tmem11
Dhrs7
Ddx47
Ccpg1os
Ccpg1
Cipc
Zfp729a
Naa15
Ctdp1
Brd3
H2ax
Mcl1
Zc3hc1
Trmt44
Cep128
Ccdc77
Bub3
Srp68
Pcif1
Pten
Smg8
Rnf123
Kbtbd7
Nelfb
Calm1
Peli1
Bud13
Rps21
Vps50
Mrps15
Wnk1
Grcc10
Tbrg1
2210016L21Rik
Stx18
Ubox5
Fastkd5
Map2k5
Pomp
Tmed10
Brca2
Nfkb1
Dnajc11
Shmt2
Ubxn1
Stx16
Poglut3
Agk
Taf5
Snrpd1
Cenps
Mrps25
Mars1
Tsnaxip1
Ranbp10
Fra10ac1
Aaas
H4c12
Rab1a
Rabggtb
Klhdc4
Rbm17
Cdk9
Ythdf2
Tmem127
Ciao1
Gne
Wasf1
Cdc40
Ankrd46
Mfn2
Ccdc126
Terf2
Eif4ebp1
Pigg
Lcorl
Mettl15
Cnih4
Rab5c
H1f2
Gm3448
Gm3417
9030025P20Rik
Scfd1
Tchp
Ptcd3
Polr1a
Fam53c
Ufl1
Cdkn2aipnl
Lars
Slc27a4
2700062C07Rik
Fbxo15
Timm21
Ttc13
Arv1
Eif4a2
Sp1
Rabl6
Slc39a13
M6pr
Hnrnpa2b1
Cbx3
Ndufs4
Rad50
Gem
Lemd2
Clpp
Nbr1
Brca1
Nutf2
Ppih
Commd2
Pdcd1
Nfat5
Get4
Snrnp27
Cul2
Ep400
Trmo
Ube4a
Znrd1as
Znrd1
Iars
Inpp5b
Bcat1
Borcs7
Eps15
Rpl31
Rab30
Drg2
Bod1l
Cops8
Coq5
Exoc2
H1f4
Eif2b5
Kat7
Dnajc16
Med4
Dpagt1
Kmt2e
Mettl25
Ccdc59
Yars
S100pbp
Srprb
Btg1
Tmem168
Mrps35
Bod1
9130401M01Rik
Naa60
Ifrd1
Dguok
Tmem43
Chchd4
Aurkaip1
Gtf2a1
Gfus
H4c18
Zc3h6
Csnk1a1
Gmfb
Lancl2
Isy1
Rnf6
Ints4
Eif3g
1190007I07Rik
Rps6kb2
Sfi1
Spty2d1
Cops7a
Leng8
Prkacb
Tbck
Aimp1
Cdk5rap2
Prmt3
Sirt2
Nfkbib
Skp2
Lmbrd2
Pdia6
Srsf2
Mfsd11
Ulk2
Napepld
Nol10
Zfp691
Chpf2
Gm3435
Yars2
Btbd8
Dhx30
Dnajb9
Inpp5k
Abcf2
Rprd2
Tsfm
Gtf2h3
Eif2b1
Slc35a1
Eif2b3
H4c3
Ccnl1
Atp5g2
Dnttip2
Dmap1
Cluh
Vta1
Taco1
Mphosph10
Mcee
Ints14
Pxk
Rbsn
Snapc3
2610001J05Rik
Psmd12
Vamp1
Trmt12
Ccn4
Man1b1
Aarsd1
Fam219b
H2bc21
H2ac21
H2ac20
Polr2m
Dnajb12
Trdmt1
Ppp1r15b
Ncdn
AU040320
Cep120
Rps8
Nelfa
Trmt10a
Mttp
Smn1
Rps19bp1
Ttll11
Rnf220
Vcpkmt
Ogfr
Wdr61
Ciao3
Atf4
Epc1
Retsat
Elmod3
Fam193a
Wdr4
Wbp2
Exo5
Zfp661
Cd274
Ahcyl1
Map3k4
Taf11
Ldah
Cnot10
Cwc27
Thap4
Atg4b
Adam17
Nbas
Pdcd7
Rps27l
Ndufa3
Vwa8
G3bp1
Togaram1
Klhl28
Trmt5
Slc38a6
Nop16
Higd2a
Zbtb17
Lrif1
Ptrhd1
Cenpo
Sec22b
Fbxw8
Mrps7
Gga3
Nup54
Rad1
Brix1
Mrpl58
Nudt15
Ptcd2
Mrps27
Pcbd2
Nmt1
Kif13b
H3c11
Rfc4
Srrd
Hps4
Cdk5
Zfp317
Zzef1
Cyb5d2
Zfp748
H4c4
Gspt1
Pex3
Adat2
Tut1
Zfp706
Kpnb1
Snrpc
Thrap3
Tmem94
Ints9
Hmbox1
Coa8
Bag5
Atp6v0b
Dmac1
Tob1
Arf6
Dgat1
Med7
Trpc4ap
Cd44
Rpl29
Zfp335
Dlst
Ndufv1
Zbtb45
Jrk
Actb
Cited2
Gabpb2
Ppp6c
Taf1d
4931406C07Rik
Mtmr2
Slc33a1
Alg1
Bms1
Zfyve1
Tmem242
Ints3
Brf1
Zdhhc3
Exosc7
Mkrn3
Pa2g4
Mterf4
Ddost
Adck1
Nsrp1
Ndufb8
Zc3h4
Ubqln4
Lamtor2
Sfxn5
Uchl5
Ro60
Brpf1
Zbtb21
Gtf2f2
Abcc5
Zfp46
Mat2a
Znfx1
Ddb1
Ndufaf5
Esf1
Dcaf10
Scnm1
Lysmd1
Trak2
Prpf4
Cdc26
Cpox
H2bc13
H2ac13
Tarbp2
Prmt5
Ndufa10
Zfp738
Ndc1
H4c9
Hnrnpab
Srsf1
P4hb
Wdr45b
Mpzl3
B4gat1
Tiparp
Ndfip1
Rbm33
Coq9
Ciapin1
Rpl27a
Haspin
Mtrex
Dhx29
Elp6
Nufip2
Cnot4
Tmem245
Tomm22
Gtf2b
Ndufs7
Rps27rt
Rps27
Rab13
Knl1
Slc16a1
Bcl2l13
Zbtb11
Hilpda
Bola3
Man2c1
Wdr59
Gas2
Rps12
Hnrnpa3
Atp6v1h
Rad18
Cdiptos
Cdipt
Tpgs1
Foxk2
Zfp207
Gpn3
Fam216a
Pnisr
Hacd2
Rdx
Ppp1r12c
Coq2
Vps4a
Ints5
Polr3a
Idh3b
Fan1
Larp4
Adprh
Myc
Hus1
Mlst8
Ap2s1
Wdr34
Nudcd3
Ddx39b
Tab1
Rps7
Mnat1
Atxn2l
Napg
Itpr1
Taf8
Acadvl
Lef1
Eif5
Ndufa9
Med17
Timm44
Cacybp
Parp2
Chd1l
Chka
Ube2d3
Kmt2a
Nsa2
Gfm2
Tbp
Dusp12
Rsl24d1
H4c11
H3c3
Eif4e2
Secisbp2l
Mthfd2
Rpl13
Usp16
Gbe1
Cox7a2
Clp1
Zcwpw2
Azi2
Atxn1l
Nip7
Cog8
Atad5
Srfbp1
Acsf3
1110038F14Rik
Spink5
Gars
Cct4
Snx18
Ndufs3
Kbtbd4
Vdac2
Ankrd40
Chordc1
Dido1
Gid8
Klhdc2
Ddx56
Zfp740
Atxn7l2
Smim11
Pex11b
Snrnp200
1810024B03Rik
Tex2
Rabggta
Nek9
Coil
Rrp1b
Tubd1
Rps6kb1
Mycbp2
Iqsec3
H4c17
Galk2
Cops2
Pdia3
Catsper2
Zdhhc1
Snrpa1
Lman2
Nmnat1
Lzic
Prkcsh
Ccdc151
Rint1
Syt3
H2bc12
H2ac12
Pigl
Ncor1
Snrpd3
Gucd1
Nfil3
Sar1b
Tfeb
Edem2
Xpnpep3
St13
Sugt1
Ndufab1
Rbbp5
Mrps10
Mrpl42
Ipo11
H4bc24
H2bc23
H2ac24
H2ac23
Kmt5b
9530077C05Rik
Psmg3
Gosr1
Vps51
Sf3b2
Jtb
C1qbp
Trub1
Tpr
Odr4
Slc39a9
Erh
H2bc18
H3c13
Sppl2a
Kansl2
Arid4b
Cwc25
Pafah2
Tsc22d2
Vcpip1
Heatr6
Cnot8
Rars2
Orc3
Txnrd2
Comt
Hinfp
Rbm48
Pex1
Tmem250-ps
Tonsl
Snrpf
Rbm39
Sde2
Egr2
Usp30
Dctn2
Usp35
Kctd21
Tmem260
Pex14
Pou2af1
Mpi
Zfp143
Notch2
Rab33b
Sgms1
Taf2
Zhx1
Cdk8
Trmu
Stoml2
Gapdh
Mtf2
Pbld2
Hnrnph3
Tatdn3
Nsl1
Mrpl4
Cpped1
Zfp513
Rpl34-ps1
Rpl34
Ndufaf1
Apobec3
Psma1
Exd2
Camk4
Zfp383
Aasdh
Zfp959
Pcbp2
Tmem147
H3f3b
Dnaja1
Dpy19l4
Rpl41
Pkm
Mob1b
Mrpl40
Hira
Exoc6b
Smarcal1
Rpl36al
Mgat2
Mtg2
Gnb2
Gabpa
Atp5j
Zmynd12
Ppcs
Mdh1b
Fastkd2
Adnp
Mterf1b
Tmem248
Nup155
Rps19
Zpbp
Exoc7
Prr14l
Zbtb49
Lyar
Tnfsf11
H3c2
Ccz1
Wdr89
Mydgf
Cfdp1
C030006K11Rik
Slain1
Actg1
Ctnnb1
Srrm2
Champ1
Rpl35a
Iqcg
Tor1aip2
Tor1aip1
Pole3
4933430I17Rik
Ap4e1
Zscan12
Fut8
Rfx2
Ubb
H1f3
Rplp1
Adrm1
Rbm25
Mettl9
Dhodh
Eef1akmt4-ece2
Eef1akmt4
Alg3
Rpl28
Polr1b
Ipo13
Polr3f
Dzank1
Stc2
Srsf5
P4ha1
Mterf1a
Mocs1
Ubqln1
Cep135
Snapc2
Lgals8
Ndufa6
Ppan
Ranbp6
Trappc8
Fahd2a
Ubc
Rad54l2
Hlcs
Epn1
Adprhl2
Herc2
Cxxc1
Wdr53
Fbxo45
Shq1
Chchd1
Rnf113a2
Rpl23a
Hnrnpa1
Cbx5
Tut7
Adpgk
Sugct
Mplkip
Sass6
Nploc4
Ipo7
Naxe
Dimt1
Minpp1
Rps29
Rpl5
Mapkbp1
Gtf2a2
1110004F10Rik
Dennd6b
Eif3d
Nudt9
Tbl1xr1
Ciao2a
Tnfaip1
Ift20